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Domain combinations for Lipase/lipooxygenase domain (PLAT/LH2 domain) superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Lipase/lipooxygenase domain (PLAT/LH2 domain) domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   117 59
Pan_troglodytes_76_2.1.4   (Chimpanzee)   29 19
Gorilla_gorilla_76_3.1   (Western gorilla)   55 29
Pongo_abelii_76_2   (Sumatran orangutan)   30 18
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   39 24
Papio_anubis_76   (Olive baboon)   28 22
Macaca_mulatta_76_1   (Rhesus monkey)   59 32
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   58 38
Otolemur_garnettii_76_3   (Small-eared galago)   41 23
Microcebus_murinus_76_1   (Gray mouse lemur)   28 19
Rattus_norvegicus_76_5.0   (Norway rat)   34 23
Mus_musculus_76_38   (House mouse)   77 35
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   31 20
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   28 21
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   34 17
Cavia_porcellus_76_3   (Domestic guinea pig)   34 21
Oryctolagus_cuniculus_76_2   (Rabbit)   29 22
Ochotona_princeps_76   (American pika)   31 18
Tupaia_belangeri_76   (Northern tree shrew)   28 18
Sus_scrofa_76_10.2   (Pig)   74 27
Bos_taurus_76_3.1   (Cattle)   27 20
Ovis_aries_76_3.1   (Sheep)   38 23
Vicugna_pacos_76_1   (Alpaca)   22 13
Tursiops_truncatus_76_1   (Bottlenose dolphin)   30 17
Mustela_putorius_furo_76_1.0   (Domestic ferret)   31 17
Ailuropoda_melanoleuca_76_1   (Giant panda)   38 21
Canis_familiaris_76_3.1   (Dog)   73 30
Felis_catus_76_6.2   (Domestic cat)   39 22
Equus_caballus_76_2   (Horse)   33 20
Myotis_lucifugus_76_2.0   (Little brown bat)   54 40
Pteropus_vampyrus_76_1   (Large flying fox)   31 19
Sorex_araneus_76_1   (European shrew)   21 14
Erinaceus_europaeus_76   (Western European hedgehog)   25 18
Procavia_capensis_76_1   (Cape rock hyrax)   29 18
Loxodonta_africana_76_3   (African savanna elephant)   39 22
Echinops_telfairi_76   (Small Madagascar hedgehog)   27 18
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   41 18
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   19 12
Macropus_eugenii_76_1.0   (Tammar wallaby)   29 18
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   35 20
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   53 27
Ornithorhynchus_anatinus_76_5   (Platypus)   30 20
Saccoglossus_kowalevskii_v3.0 126 41
Petromyzon_marinus_76_7.0   (Sea lamprey)   48 18
Meleagris_gallopavo_76_2   (Turkey)   21 14
Gallus_gallus_76_4   (Chicken)   22 15
Anas_platyrhynchos_76_1.0   (Mallard)   21 17
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   25 12
Ficedula_albicollis_76_1.0   (Collared flycatcher)   23 17
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   18 16
Anolis_carolinensis_76_2.0   (Green anole)   38 20
Xenopus_laevis_   (African clawed frog)   14 14
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   52 32
Latimeria_chalumnae_76_1   (Coelacanth)   32 16
Lepisosteus_oculatus_76   (Spotted gar)   71 34
Gadus_morhua_76_1   (Atlantic cod)   48 31
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   66 25
Takifugu_rubripes_76_4   (Torafugu)   105 64
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   51 27
Oryzias_latipes_76_1   (Japanese medaka)   55 28
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   47 20
Poecilia_formosa_76   (Amazon molly)   68 23
Oreochromis_niloticus_76_1.0   (Nile tilapia)   100 31
Astyanax_mexicanus_76   (Mexican tetra)   50 20
Danio_rerio_76_9   (Zebrafish)   65 32
Oikopleura_dioica 34 10
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   46 12
Ciona_intestinalis_76   (Vase tunicate)   23 19
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   66 35
Adineta_vaga 152 95
Octopus_bimaculoides_280 41 26
Crassostrea_gigas_22   (Pacific oyster)   77 41
Lottia_gigantea_   (Owl limpet)   68 29
Helobdella_robusta_ 40 17
Capitella_sp._I_ 60 22
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Heliconius_melpomene_   (Postman butterfly)   2 2
Bombyx_mori_   (Domestic silkworm)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4 4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 2
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2 2
Lucilia_cuprina   (Australian sheep blowfly)   2 2
Drosophila_grimshawi_1.3 1 1
Drosophila_willistoni_1.3 4 4
Drosophila_pseudoobscura_2.13 5 5
Drosophila_persimilis_1.3 5 5
Drosophila_suzukii 3 3
Drosophila_yakuba_1.3 3 3
Drosophila_simulans_1.3 2 2
Drosophila_sechellia_1.3 3 3
Drosophila_melanogaster_76_5   (Fruit fly)   6 6
Drosophila_erecta_1.3 3 3
Drosophila_ananassae_1.3 3 3
Drosophila_virilis_1.2 2 2
Drosophila_mojavensis_1.3 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   6 6
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 3
Acyrthosiphon_pisum_   (Pea aphid)   2 2
Rhodnius_prolixus_22 6 6
Daphnia_pulex_   (Common water flea)   4 4
Strigamia_maritima_22 13 6
Sarcoptes_scabiei 2 2
Tetranychus_urticae_   (Two-spotted spider mite)   4 4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3 3
Pristionchus_pacificus_ 7 6
Meloidogyne_incognita_   (Southern root-knot nematode)   5 3
Meloidogyne_hapla_ 2 1
Onchocerca_volvulus_22 5 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4 2
Caenorhabditis_japonica_ 4 3
Caenorhabditis_brenneri_ 6 5
Caenorhabditis_remanei_ 6 5
Caenorhabditis_elegans_76_235   (Roundworm)   6 5
Caenorhabditis_briggsae_2 6 5
Trichinella_spiralis_22 4 2
Hymenolepis_microstoma_ 16 3
Echinococcus_multilocularis_ 21 5
Echinococcus_granulosus_ 21 5
Taenia_solium_   (Pork tapeworm)   10 5
Schistosoma_mansoni_ 22 6
Mnemiopsis_leidyi   (Sea walnut)   38 16
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 80 49
Nematostella_vectensis_1.0   (Starlet sea anemone)   71 48
Hydra_vulgaris 50 34
Amphimedon_queenslandica 1 1
Trichoplax_adhaerens_ 38 7
Proterospongia_sp._ATCC_50818_ 19 4
Monosiga_brevicollis_ 22 5
Sphaeroforma_arctica_JP610_ 2 2
Capsaspora_owczarzaki_ATCC_30864_ 3 3
Selaginella_moellendorffii_ 42 42
Pinus_taeda   (Loblolly pine)   33 31
Picea_abies   (Norway spruce)   22 22
Eucalyptus_grandis_v201   (Rose gum)   30 30
Theobroma_cacao_B97-61/B2_v1   (Cacao)   25 24
Gossypium_raimondii_v221 38 38
Citrus_clementina_v165 24 24
Citrus_sinensis_v154   (Sweet orange)   43 43
Thellungiella_halophila_v173 21 21
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   28 28
Capsella_rubella_v183 15 15
Arabidopsis_lyrata_   (Lyrate rockcress)   14 14
Arabidopsis_thaliana_10   (Thale cress)   15 15
Carica_papaya_   (Papaya)   22 22
Medicago_truncatula_   (Barrel medic)   56 56
Phaseolus_vulgaris_v186   (French bean)   40 39
Glycine_max_v109   (Soybean)   66 66
Cucumis_sativus_v122   (Cucumber)   35 35
Fragaria_vesca_   (Wild strawberry)   22 22
Malus_domestica_v196   (Apple)   53 51
Prunus_persica_v139   (Peach)   23 23
Linum_usitatissimum_v200   (Flax)   29 29
Manihot_esculenta_v147   (Cassava)   30 30
Populus_trichocarpa_v156   (Black cottonwood)   41 41
Vitis_vinifera_   (Wine grape)   21 19
Mimulus_guttatus_v140   (Spotted monkey flower)   18 18
Solanum_lycopersicum_v.2.3   (Tomato)   24 24
Solanum_tuberosum_   (Potato)   29 29
Actinidia_chinensis_Hongyang_ 20 19
Aquilegia_coerulea_v195 21 21
Triticum_urartu_22 19 19
Triticum_aestivum_22   (Bread wheat)   49 49
Aegilops_tauschii_22 19 19
Brachypodium_distachyon_   (Stiff brome)   15 15
Oryza_barthii_22   (African wild rice)   21 21
Oryza_meridionalis_22 22 22
Oryza_glumaepatula_22 25 25
Oryza_glaberrima   (African rice)   18 18
Oryza_punctata_22 27 21
Oryza_nivara_22 27 27
Oryza_brachyantha_22   (Malo sina)   16 16
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   28 28
Oryza_sativa_v193   (Rice)   28 28
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   20 19
Panicum_virgatum_v202   (Switchgrass)   25 25
Setaria_italica_v164   (Foxtail millet)   21 20
Zea_mays_subsp._mays_   (Maize)   26 26
Zea_mays_v181   (Maize)   25 25
Sorghum_bicolor_   (Sorghum)   15 15
Musa_balbisiana   (Balbis banana)   19 19
Musa_acuminata_22   (Wild Malaysian banana)   21 21
Amborella_trichopoda_22 13 13
Physcomitrella_patens 14 14
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 13 1
Chlorella_variabilis_sp._NC64A_ 8 2
Volvox_carteri_f._nagariensis_ 42 5
Volvox_carteri_v199 41 4
Chlamydomonas_reinhardtii_4.0 41 5
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 1 1
Micromonas_sp._RCC299_ 10 3
Micromonas_pusilla_CCMP1545_v3.0 19 3
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 2 2
Cyanophora_paradoxa_ 4 4
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 2 2
Toxoplasma_gondii_VEG 2 2
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 1 1
Babesia_bovis_T2Bo_ 2 2
Theileria_parva__ 1 1
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 2 2
Guillardia_theta_CCMP2712_v1.0_ 8 5
Trichodesmium_erythraeum_IMS101 1 1
Microlunatus_phosphovorus_NM-1 1 1
Eubacterium_limosum_KIST612 3 1
Clostridium_novyi_NT 1 1
Clostridium_perfringens_ATCC_13124 1 1
Clostridium_acetobutylicum_ATCC_824 1 1
Paenibacillus_terrae_HPL-003 1 1
Paludibacter_propionicigenes_WB4 1 1
Prevotella_intermedia_17 1 1
Sphaerochaeta_pleomorpha_str._Grapes 1 1
Sorangium_cellulosum_'So_ce_56' 1 1
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 1 1
Nitrosospira_multiformis_ATCC_25196 1 1
Nitrosococcus_oceani_ATCC_19707 1 1
Haloarcula_marismortui_ATCC_43049 1 1
Methanococcus_voltae_A3 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   55 39
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   6 6
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   6 6
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6 5
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   22 22
Hordeum_vulgare_22   (Domesticated barley)   32 32
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   26 26
Neospora_caninum_Nc-Liverpool_6.2 2 2
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1
Synechococcus_sp._PCC_7002 1 1
Clostridium_perfringens_SM101 1 1
Clostridium_perfringens_str._13 1 1
Clostridium_botulinum_BKT015925 2 2
Clostridium_acetobutylicum_DSM_1731 1 1
Clostridium_acetobutylicum_EA_2018 1 1
Paenibacillus_polymyxa_CR1 1 1
Paenibacillus_polymyxa_E681 1 1
Myxococcus_stipitatus_DSM_14675 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   40 25
Pan_troglodytes_69_2.1.4   (Chimpanzee)   23 16
Gorilla_gorilla_69_3.1   (Western gorilla)   34 21
Pongo_abelii_69_2   (Sumatran orangutan)   29 17
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   29 21
Macaca_mulatta_69_1   (Rhesus monkey)   32 22
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   34 21
Otolemur_garnettii_69_3   (Small-eared galago)   40 22
Microcebus_murinus_69_1   (Gray mouse lemur)   28 19
Rattus_norvegicus_69_3.4   (Norway rat)   36 22
Mus_musculus_69_38   (House mouse)   35 21
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   31 20
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   27 20
Cavia_porcellus_69_3   (Domestic guinea pig)   30 17
Oryctolagus_cuniculus_69_2   (Rabbit)   25 18
Ochotona_princeps_69   (American pika)   31 18
Tupaia_belangeri_69   (Northern tree shrew)   28 18
Sus_scrofa_69_10.2   (Pig)   41 18
Bos_taurus_69_3.1   (Cattle)   26 19
Vicugna_pacos_69_1   (Alpaca)   22 13
Tursiops_truncatus_69_1   (Bottlenose dolphin)   30 17
Mustela_putorius_furo_69_1.0   (Domestic ferret)   31 17
Ailuropoda_melanoleuca_69_1   (Giant panda)   37 20
Canis_familiaris_69_3.1   (Dog)   34 20
Felis_catus_69   (Domestic cat)   27 16
Equus_caballus_69_2   (Horse)   32 19
Myotis_lucifugus_69_2.0   (Little brown bat)   51 37
Pteropus_vampyrus_69_1   (Large flying fox)   31 19
Sorex_araneus_69_1   (European shrew)   21 14
Erinaceus_europaeus_69   (Western European hedgehog)   25 18
Procavia_capensis_69_1   (Cape rock hyrax)   29 18
Loxodonta_africana_69_3   (African savanna elephant)   28 18
Echinops_telfairi_69   (Small Madagascar hedgehog)   27 18
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   20 11
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   19 12
Macropus_eugenii_69_1.0   (Tammar wallaby)   29 18
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   33 18
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   47 25
Ornithorhynchus_anatinus_69_5   (Platypus)   29 19
Petromyzon_marinus_69_7.0   (Sea lamprey)   33 12
Meleagris_gallopavo_69_2   (Turkey)   19 12
Gallus_gallus_69_2   (Chicken)   20 13
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   25 12
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   16 14
Anolis_carolinensis_69_2.0   (Green anole)   35 17
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   37 24
Latimeria_chalumnae_69_1   (Coelacanth)   30 14
Gadus_morhua_69_1   (Atlantic cod)   37 20
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   36 16
Takifugu_rubripes_69_4   (Torafugu)   40 20
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   35 18
Oryzias_latipes_69_1   (Japanese medaka)   39 19
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   47 20
Oreochromis_niloticus_69_1.0   (Nile tilapia)   50 21
Danio_rerio_69_9   (Zebrafish)   52 22
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   19 8
Ciona_intestinalis_69   (Vase tunicate)   22 18
Drosophila_melanogaster_69_5   (Fruit fly)   4 4
Caenorhabditis_elegans_69_215   (Roundworm)   6 5
Arabidopsis_thaliana_10   (Thale cress)   14 14

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   140 61
Homo_sapiens__(NCBI_version)   (Human)   64 30
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   35 21
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   6 4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   5 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5 3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   3 3
Lotus_japonicus__(Early_assembly) 20 20
Malus_x_domestica_(Duplicate)   (Apple)   53 51
Ricinus_communis__(Early_assembly)   (Castor bean)   19 19
Nicotiana_benthamiana_0.4.4_(Early_draft) 39 37
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   24 24
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   24 24
Phoenix_dactylifera__(Early_draft)   (Date palm)   4 4
NCBI_plasmid_sequences_(Plasmids) 5 5
TargetDB__(Targets) 40 28
Protein_Data_Bank_(all_PDB_sequenc) 111 111
Protozoadb_2010_08_(Protozoadb) 21 21
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 268 268
STRING_v9.0.5_(STRING) 1673 1116
PDB_chains_(SCOP_1.75)_(PDB) 24 24
Uniprot_2018_03_genome 13904 9105
NCBI_2017_08_genome 19326 11085

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