Domain combinations for TNF-like superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a TNF-like domain in that genome.

Complete genomes

Genome		Number	Proteins
Homo_sapiens_76_38	(Human)	145	143
Pan_troglodytes_76_2.1.4	(Chimpanzee)	54	53
Gorilla_gorilla_76_3.1	(Western gorilla)	68	65
Pongo_abelii_76_2	(Sumatran orangutan)	45	44
Nomascus_leucogenys_76_1.0	(Northern white-cheeked gibbon)	45	43
Papio_anubis_76	(Olive baboon)	53	51
Macaca_mulatta_76_1	(Rhesus monkey)	68	66
Callithrix_jacchus_76_3.2.1	(White-tufted-ear marmoset)	95	92
Otolemur_garnettii_76_3	(Small-eared galago)	53	51
Microcebus_murinus_76_1	(Gray mouse lemur)	38	37
Rattus_norvegicus_76_5.0	(Norway rat)	53	52
Mus_musculus_76_38	(House mouse)	86	82
Dipodomys_ordii_76_1	(Ord's kangaroo rat)	36	35
Ictidomys_tridecemlineatus_76_2	(Thirteen-lined ground squirrel)	52	50
Heterocephalus_glaber_v1.7-2	(Naked mole-rat)	47	46
Cavia_porcellus_76_3	(Domestic guinea pig)	50	47
Oryctolagus_cuniculus_76_2	(Rabbit)	54	53
Ochotona_princeps_76	(American pika)	36	36
Tupaia_belangeri_76	(Northern tree shrew)	39	38
Sus_scrofa_76_10.2	(Pig)	57	56
Bos_taurus_76_3.1	(Cattle)	55	55
Ovis_aries_76_3.1	(Sheep)	53	53
Vicugna_pacos_76_1	(Alpaca)	22	22
Tursiops_truncatus_76_1	(Bottlenose dolphin)	46	44
Mustela_putorius_furo_76_1.0	(Domestic ferret)	50	49
Ailuropoda_melanoleuca_76_1	(Giant panda)	57	56
Canis_familiaris_76_3.1	(Dog)	58	56
Felis_catus_76_6.2	(Domestic cat)	48	48
Equus_caballus_76_2	(Horse)	51	50
Myotis_lucifugus_76_2.0	(Little brown bat)	45	45
Pteropus_vampyrus_76_1	(Large flying fox)	46	45
Sorex_araneus_76_1	(European shrew)	23	22
Erinaceus_europaeus_76	(Western European hedgehog)	31	30
Procavia_capensis_76_1	(Cape rock hyrax)	38	37
Loxodonta_africana_76_3	(African savanna elephant)	60	58
Echinops_telfairi_76	(Small Madagascar hedgehog)	35	35
Dasypus_novemcinctus_76_2	(Nine-banded armadillo)	60	58
Choloepus_hoffmanni_76_1	(Hoffmann's two-fingered sloth)	21	21
Macropus_eugenii_76_1.0	(Tammar wallaby)	36	36
Sarcophilus_harrisii_76_7.0	(Tasmanian devil)	51	50
Monodelphis_domestica_76_5	(Gray short-tailed opossum)	46	46
Ornithorhynchus_anatinus_76_5	(Platypus)	45	43
Saccoglossus_kowalevskii_v3.0		37	37
Petromyzon_marinus_76_7.0	(Sea lamprey)	20	19
Meleagris_gallopavo_76_2	(Turkey)	37	37
Gallus_gallus_76_4	(Chicken)	38	37
Anas_platyrhynchos_76_1.0	(Mallard)	35	34
Taeniopygia_guttata_76_3.2.4	(Zebra finch)	39	38
Ficedula_albicollis_76_1.0	(Collared flycatcher)	43	42
Pelodiscus_sinensis_76_1.0	(Chinese soft-shelled turtle)	42	41
Anolis_carolinensis_76_2.0	(Green anole)	43	42
Xenopus_laevis_	(African clawed frog)	38	36
Xenopus_tropicalis_76_4.2	(Tropical clawed frog)	42	41
Latimeria_chalumnae_76_1	(Coelacanth)	58	56
Lepisosteus_oculatus_76	(Spotted gar)	59	57
Gadus_morhua_76_1	(Atlantic cod)	65	63
Tetraodon_nigroviridis_76_8	(Spotted green pufferfish)	65	63
Takifugu_rubripes_76_4	(Torafugu)	94	90
Gasterosteus_aculeatus_76_1	(Three-spined stickleback)	68	66
Oryzias_latipes_76_1	(Japanese medaka)	64	63
Xiphophorus_maculatus_76_4.4.2	(Southern platyfish)	78	75
Poecilia_formosa_76	(Amazon molly)	94	85
Oreochromis_niloticus_76_1.0	(Nile tilapia)	111	109
Astyanax_mexicanus_76	(Mexican tetra)	78	76
Danio_rerio_76_9	(Zebrafish)	113	110
Oikopleura_dioica		8	8
Ciona_savignyi_76_2.0	(Pacific transparent sea squirt)	9	8
Ciona_intestinalis_76	(Vase tunicate)	11	10
Strongylocentrotus_purpuratus_v3.1	(Purple sea urchin)	20	17
Adineta_vaga		13	13
Octopus_bimaculoides_280		10	10
Crassostrea_gigas_22	(Pacific oyster)	393	346
Lottia_gigantea_	(Owl limpet)	16	15
Helobdella_robusta_		16	13
Capitella_sp._I_		62	39
Danaus_plexippus_OGS1.0	(Monarch butterfly)	2	2
Heliconius_melpomene_	(Postman butterfly)	2	2
Bombyx_mori_	(Domestic silkworm)	1	1
Nasonia_vitripennis_	(Jewel wasp)	1	1
Apis_mellifera_38.2d_(Not_maintained)	(Honey bee)	3	3
Harpegnathos_saltator_v3.3	(Jerdon's jumping ant)	2	2
Linepithema_humile_v1.1	(Argentine ant)	2	2
Pogonomyrmex_barbatus_v1.2	(Red harvester ant)	3	3
Solenopsis_invicta_v.2.2.3	(Red fire ant)	3	3
Acromyrmex_echinatior_v3.8	(Panamanian leafcutter ant)	2	2
Atta_cephalotes_v1.1		2	2
Camponotus_floridanus_v3.3	(Florida carpenter ant)	3	3
Lucilia_cuprina	(Australian sheep blowfly)	1	1
Drosophila_grimshawi_1.3		1	1
Drosophila_willistoni_1.3		1	1
Drosophila_pseudoobscura_2.13		1	1
Drosophila_persimilis_1.3		1	1
Drosophila_suzukii		1	1
Drosophila_yakuba_1.3		1	1
Drosophila_simulans_1.3		1	1
Drosophila_sechellia_1.3		1	1
Drosophila_melanogaster_76_5	(Fruit fly)	2	2
Drosophila_erecta_1.3		1	1
Drosophila_ananassae_1.3		1	1
Drosophila_virilis_1.2		1	1
Drosophila_mojavensis_1.3		1	1
Aedes_aegypti_55_(Not_maintained)	(Yellow fever mosquito)	1	1
Culex_pipiens_quinquefasciatus_	(Southern house mosquito)	1	1
Anopheles_darlingi_22	(American malaria mosquito)	1	1
Anopheles_gambiae_49_3j	(African malaria mosquito)	1	1
Tribolium_castaneum_3.0	(Red flour beetle)	1	1
Pediculus_humanus_corporis__(Early_assembly)	(Human body louse)	1	1
Acyrthosiphon_pisum_	(Pea aphid)	2	2
Rhodnius_prolixus_22		2	2
Daphnia_pulex_	(Common water flea)	156	154
Strigamia_maritima_22		5	5
Tetranychus_urticae_	(Two-spotted spider mite)	1	1
Ixodes_scapularis__(Preliminary)	(Black-legged tick)	2	2
Caenorhabditis_brenneri_		1	1
Caenorhabditis_elegans_76_235	(Roundworm)	1	1
Caenorhabditis_briggsae_2		1	1
Hymenolepis_microstoma_		1	1
Echinococcus_multilocularis_		2	2
Echinococcus_granulosus_		2	2
Taenia_solium_	(Pork tapeworm)	2	2
Schistosoma_mansoni_		2	2
Acropora_digitifera_v1.0		19	17
Nematostella_vectensis_1.0	(Starlet sea anemone)	7	6
Hydra_vulgaris		8	8
Trichoplax_adhaerens_		1	1
Monosiga_brevicollis_		5	4
Dictyostelium_discoideum		1	1
Cyanophora_paradoxa_		5	5
Pythium_arrhenomanes_ATCC_12531_22		1	1
Phytophthora_sojae_1.1		2	2
Phytophthora_capsici_		1	1
Symbiodinium_minutum_clade_B1_v1.2		5	2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488		1	1
Meiothermus_silvanus_DSM_9946		1	1
Ethanoligenens_harbinense_YUAN-3		1	1
Oscillibacter_valericigenes_Sjm18-20		1	1
Syntrophobotulus_glycolicus_DSM_8271		1	1
Desulfotomaculum_ruminis_DSM_2154		1	1
Clostridium_perfringens_ATCC_13124		1	1
Caldicellulosiruptor_hydrothermalis_108		1	1
Paenibacillus_sp._JDR-2		2	2
Paenibacillus_terrae_HPL-003		1	1
Paenibacillus_polymyxa_M1		2	2
Lysinibacillus_sphaericus_C3-41		1	1
Bacillus_sp._JS		1	1
Bacillus_atrophaeus_1942		2	2
Bacillus_subtilis_subsp._subtilis_str._168		2	2
Bacillus_licheniformis_DSM_13_=_ATCC_14580		1	1
Bacillus_halodurans_C-125		1	1
Bacillus_weihenstephanensis_KBAB4		4	4
Bacillus_thuringiensis_str._Al_Hakam		4	4
Bacillus_cereus_03BB102		4	4
Bacillus_anthracis_str._A0248		3	3
Bacillus_pumilus_SAFR-032		1	1
Dyadobacter_fermentans_DSM_18053		1	1
Runella_slithyformis_DSM_19594		1	1
Solitalea_canadensis_DSM_3403		2	2
Owenweeksia_hongkongensis_DSM_17368		2	2
Zunongwangia_profunda_SM-A87		1	1
Krokinobacter_sp._4H-3-7-5		1	1
Lacinutrix_sp._5H-3-7-4		1	1
Zobellia_galactanivorans		1	1
Flavobacteriaceae_bacterium_3519-10		1	1
Flavobacterium_indicum_GPTSA100-9		3	3
Desulfovibrio_africanus_str._Walvis_Bay		1	1
Phaeobacter_gallaeciensis_2.10		1	1
Ketogulonicigenium_vulgare_Y25		1	1
Ketogulonigenium_vulgarum_WSH-001		1	1
Roseobacter_litoralis_Och_149		2	2
Roseobacter_denitrificans_OCh_114		1	1
Paracoccus_denitrificans_PD1222		1	1
Azospirillum_lipoferum_4B		1	1
Azospirillum_brasilense_Sp245		1	1
Xanthobacter_autotrophicus_Py2		1	1
Agrobacterium_sp._H13-3		1	1
Oligotropha_carboxidovorans_OM4		1	1
Nitrobacter_hamburgensis_X14		1	1
Shewanella_woodyi_ATCC_51908		1	1
Pseudomonas_sp._TKP		1	1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421		1	1
Pseudomonas_entomophila_L48		1	1
Pseudomonas_protegens_Pf-5		1	1
Pseudomonas_fluorescens_SBW25		1	1

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Strains

Genome		Number	Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)	(Tropical clawed frog)	62	60
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)	(Fruit fly)	2	2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)	(African malaria mosquito)	1	1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)	(Roundworm)	1	1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488		1	1
Clostridium_acidurici_9a		1	1
Desulfosporosinus_meridiei_DSM_13257		1	1
Clostridium_perfringens_SM101		1	1
Clostridium_perfringens_str._13		1	1
Lactococcus_lactis_subsp._cremoris_SK11		1	1
Paenibacillus_larvae_subsp._larvae_DSM_25430		2	2
Paenibacillus_polymyxa_CR1		1	1
Paenibacillus_polymyxa_SC2		2	2
Paenibacillus_polymyxa_E681		1	1
Bacillus_amyloliquefaciens_XH7		1	1
Bacillus_amyloliquefaciens_LL3		1	1
Bacillus_amyloliquefaciens_TA208		1	1
Bacillus_subtilis_PY79		2	2
Bacillus_subtilis_XF-1		2	2
Bacillus_subtilis_QB928		1	1
Bacillus_subtilis_BSn5		3	3
Bacillus_subtilis_subsp._subtilis_str._BAB-1		1	1
Bacillus_subtilis_subsp._subtilis_str._BSP1		1	1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1		1	1
Bacillus_subtilis_subsp._subtilis_6051-HGW		2	2
Bacillus_subtilis_subsp._spizizenii_TU-B-10		4	4
Bacillus_subtilis_subsp._spizizenii_str._W23		1	1
Bacillus_subtilis_subsp._natto_BEST195		1	1
Bacillus_toyonensis_BCT-7112		2	2
Bacillus_thuringiensis_HD-771		3	3
Bacillus_thuringiensis_HD-789		3	3
Bacillus_thuringiensis_MC28		4	4
Bacillus_thuringiensis_serovar_chinensis_CT-43		2	2
Bacillus_thuringiensis_YBT-1518		2	2
Bacillus_thuringiensis_Bt407		2	2
Bacillus_thuringiensis_serovar_konkukian_str._97-27		4	4
Bacillus_thuringiensis_serovar_kurstaki_str._HD73		1	1
Bacillus_thuringiensis_BMB171		7	7
Bacillus_thuringiensis_serovar_finitimus_YBT-020		3	3
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056		3	3
Bacillus_cereus_FRI-35		1	1
Bacillus_cereus_biovar_anthracis_str._CI		4	4
Bacillus_cereus_AH820		3	3
Bacillus_cereus_AH187		2	2
Bacillus_cereus_B4264		3	3
Bacillus_cereus_G9842		3	3
Bacillus_cereus_Q1		2	2
Bacillus_cereus_F837/76		4	4
Bacillus_cereus_NC7401		2	2
Bacillus_cereus_E33L		5	5
Bacillus_cereus_ATCC_14579		5	5
Bacillus_cereus_ATCC_10987		3	3
Bacillus_anthracis_str._H9401		4	4
Bacillus_anthracis_str._CDC_684		4	4
Bacillus_anthracis_str._'Ames_Ancestor'		4	4
Bacillus_anthracis_str._Sterne		4	4
Bacillus_anthracis_str._Ames		4	4
Bacillus_megaterium_WSH-002		2	2
Bacillus_megaterium_QM_B1551		3	3
Nonlabens_dokdonensis_DSW-6		1	1
Leisingera_methylohalidivorans_DSM_14336		1	1
Oligotropha_carboxidovorans_OM5		1	1
Oligotropha_carboxidovorans_OM5		1	1
Mannheimia_haemolytica_USMARC_2286		3	3
Mannheimia_haemolytica_M42548		3	3
Mannheimia_haemolytica_D174		3	3
Mannheimia_haemolytica_D153		3	3
Mannheimia_haemolytica_USDA-ARS-USMARC-183		2	2
Mannheimia_haemolytica_USDA-ARS-USMARC-185		1	1
Pseudomonas_monteilii_SB3101		1	1
Pseudomonas_monteilii_SB3078		1	1
Pseudomonas_putida_S16		1	1
Pseudomonas_protegens_CHA0		1	1
Pseudomonas_poae_RE*1-1-14		1	1
Pseudomonas_fluorescens_F113		1	1
Pseudomonas_fluorescens_A506		1	1
Pseudomonas_fluorescens_Pf0-1		2	2

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Longest transcript per gene

Genome		Number	Proteins
Homo_sapiens_69_37	(Human)	76	73
Pan_troglodytes_69_2.1.4	(Chimpanzee)	51	50
Gorilla_gorilla_69_3.1	(Western gorilla)	50	48
Pongo_abelii_69_2	(Sumatran orangutan)	44	43
Nomascus_leucogenys_69_1.0	(Northern white-cheeked gibbon)	43	41
Macaca_mulatta_69_1	(Rhesus monkey)	49	47
Callithrix_jacchus_69_3.2.1	(White-tufted-ear marmoset)	51	49
Otolemur_garnettii_69_3	(Small-eared galago)	53	51
Microcebus_murinus_69_1	(Gray mouse lemur)	38	37
Rattus_norvegicus_69_3.4	(Norway rat)	45	43
Mus_musculus_69_38	(House mouse)	52	50
Dipodomys_ordii_69_1	(Ord's kangaroo rat)	36	35
Ictidomys_tridecemlineatus_69_2	(Thirteen-lined ground squirrel)	52	50
Cavia_porcellus_69_3	(Domestic guinea pig)	48	46
Oryctolagus_cuniculus_69_2	(Rabbit)	47	46
Ochotona_princeps_69	(American pika)	36	36
Tupaia_belangeri_69	(Northern tree shrew)	39	38
Sus_scrofa_69_10.2	(Pig)	50	49
Bos_taurus_69_3.1	(Cattle)	52	52
Vicugna_pacos_69_1	(Alpaca)	22	22
Tursiops_truncatus_69_1	(Bottlenose dolphin)	46	44
Mustela_putorius_furo_69_1.0	(Domestic ferret)	49	48
Ailuropoda_melanoleuca_69_1	(Giant panda)	49	48
Canis_familiaris_69_3.1	(Dog)	50	48
Felis_catus_69	(Domestic cat)	34	34
Equus_caballus_69_2	(Horse)	50	49
Myotis_lucifugus_69_2.0	(Little brown bat)	45	45
Pteropus_vampyrus_69_1	(Large flying fox)	46	45
Sorex_araneus_69_1	(European shrew)	23	22
Erinaceus_europaeus_69	(Western European hedgehog)	31	30
Procavia_capensis_69_1	(Cape rock hyrax)	38	37
Loxodonta_africana_69_3	(African savanna elephant)	50	49
Echinops_telfairi_69	(Small Madagascar hedgehog)	35	35
Dasypus_novemcinctus_69_2	(Nine-banded armadillo)	26	26
Choloepus_hoffmanni_69_1	(Hoffmann's two-fingered sloth)	21	21
Macropus_eugenii_69_1.0	(Tammar wallaby)	36	36
Sarcophilus_harrisii_69_7.0	(Tasmanian devil)	44	43
Monodelphis_domestica_69_5	(Gray short-tailed opossum)	45	45
Ornithorhynchus_anatinus_69_5	(Platypus)	41	39
Petromyzon_marinus_69_7.0	(Sea lamprey)	20	19
Meleagris_gallopavo_69_2	(Turkey)	33	33
Gallus_gallus_69_2	(Chicken)	38	37
Taeniopygia_guttata_69_3.2.4	(Zebra finch)	37	36
Pelodiscus_sinensis_69_1.0	(Chinese soft-shelled turtle)	38	37
Anolis_carolinensis_69_2.0	(Green anole)	37	36
Xenopus_tropicalis_69_4.2	(Tropical clawed frog)	38	37
Latimeria_chalumnae_69_1	(Coelacanth)	50	48
Gadus_morhua_69_1	(Atlantic cod)	53	51
Tetraodon_nigroviridis_69_8	(Spotted green pufferfish)	59	57
Takifugu_rubripes_69_4	(Torafugu)	50	47
Gasterosteus_aculeatus_69_1	(Three-spined stickleback)	54	52
Oryzias_latipes_69_1	(Japanese medaka)	54	53
Xiphophorus_maculatus_69_4.4.2	(Southern platyfish)	78	75
Oreochromis_niloticus_69_1.0	(Nile tilapia)	94	92
Danio_rerio_69_9	(Zebrafish)	82	80
Ciona_savignyi_69_2.0	(Pacific transparent sea squirt)	9	8
Ciona_intestinalis_69	(Vase tunicate)	11	10
Drosophila_melanogaster_69_5	(Fruit fly)	1	1
Caenorhabditis_elegans_69_215	(Roundworm)	1	1

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Others

Genome		Number	Proteins
Homo_sapiens_75_37_(old_version_GRC)	(Human)	155	152
Homo_sapiens__(NCBI_version)	(Human)	79	77
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)	(House mouse)	54	51
Heliconius_numata__(Incomplete)		1	1
NCBI_plasmid_sequences_(Plasmids)		9	9
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		1295	1295
STRING_v9.0.5_(STRING)		1483	1430
Uniprot_2018_03_genome		15215	14867
NCBI_2017_08_genome		25085	24555
PDB_chains_(SCOP_1.75)_(PDB)		40	40
TargetDB__(Targets)		16	16
UniProt__viral_sequences_(Viral)		16	16
NCBI_viral_sequences_(Viral)		48	48
Protein_Data_Bank_(all_PDB_sequenc)		545	533

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