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Domain combinations for L domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a L domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   770 659
Pan_troglodytes_76_2.1.4   (Chimpanzee)   257 212
Gorilla_gorilla_76_3.1   (Western gorilla)   345 281
Pongo_abelii_76_2   (Sumatran orangutan)   251 210
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   249 202
Papio_anubis_76   (Olive baboon)   273 231
Macaca_mulatta_76_1   (Rhesus monkey)   390 314
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   502 417
Otolemur_garnettii_76_3   (Small-eared galago)   274 222
Microcebus_murinus_76_1   (Gray mouse lemur)   211 169
Rattus_norvegicus_76_5.0   (Norway rat)   312 259
Mus_musculus_76_38   (House mouse)   534 445
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   197 163
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   263 218
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   264 213
Cavia_porcellus_76_3   (Domestic guinea pig)   262 220
Oryctolagus_cuniculus_76_2   (Rabbit)   265 217
Ochotona_princeps_76   (American pika)   195 160
Tupaia_belangeri_76   (Northern tree shrew)   177 149
Sus_scrofa_76_10.2   (Pig)   314 255
Bos_taurus_76_3.1   (Cattle)   273 227
Ovis_aries_76_3.1   (Sheep)   272 223
Vicugna_pacos_76_1   (Alpaca)   130 112
Tursiops_truncatus_76_1   (Bottlenose dolphin)   221 183
Mustela_putorius_furo_76_1.0   (Domestic ferret)   264 214
Ailuropoda_melanoleuca_76_1   (Giant panda)   269 219
Canis_familiaris_76_3.1   (Dog)   321 268
Felis_catus_76_6.2   (Domestic cat)   247 206
Equus_caballus_76_2   (Horse)   281 229
Myotis_lucifugus_76_2.0   (Little brown bat)   243 203
Pteropus_vampyrus_76_1   (Large flying fox)   222 178
Sorex_araneus_76_1   (European shrew)   160 126
Erinaceus_europaeus_76   (Western European hedgehog)   185 151
Procavia_capensis_76_1   (Cape rock hyrax)   178 144
Loxodonta_africana_76_3   (African savanna elephant)   315 259
Echinops_telfairi_76   (Small Madagascar hedgehog)   184 152
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   282 231
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   138 111
Macropus_eugenii_76_1.0   (Tammar wallaby)   204 159
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   272 219
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   253 201
Ornithorhynchus_anatinus_76_5   (Platypus)   245 210
Saccoglossus_kowalevskii_v3.0 320 256
Petromyzon_marinus_76_7.0   (Sea lamprey)   407 387
Meleagris_gallopavo_76_2   (Turkey)   257 208
Gallus_gallus_76_4   (Chicken)   240 191
Anas_platyrhynchos_76_1.0   (Mallard)   231 187
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   219 178
Ficedula_albicollis_76_1.0   (Collared flycatcher)   226 183
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   271 226
Anolis_carolinensis_76_2.0   (Green anole)   259 208
Xenopus_laevis_   (African clawed frog)   268 218
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   308 242
Latimeria_chalumnae_76_1   (Coelacanth)   312 261
Lepisosteus_oculatus_76   (Spotted gar)   339 278
Gadus_morhua_76_1   (Atlantic cod)   320 255
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   315 261
Takifugu_rubripes_76_4   (Torafugu)   742 577
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   362 294
Oryzias_latipes_76_1   (Japanese medaka)   339 267
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   331 270
Poecilia_formosa_76   (Amazon molly)   341 271
Oreochromis_niloticus_76_1.0   (Nile tilapia)   386 307
Astyanax_mexicanus_76   (Mexican tetra)   339 281
Danio_rerio_76_9   (Zebrafish)   487 399
Oikopleura_dioica 107 94
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   161 107
Ciona_intestinalis_76   (Vase tunicate)   149 125
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   739 494
Adineta_vaga 185 163
Octopus_bimaculoides_280 204 166
Crassostrea_gigas_22   (Pacific oyster)   201 164
Lottia_gigantea_   (Owl limpet)   170 141
Helobdella_robusta_ 144 120
Capitella_sp._I_ 430 399
Danaus_plexippus_OGS1.0   (Monarch butterfly)   163 114
Heliconius_melpomene_   (Postman butterfly)   156 109
Bombyx_mori_   (Domestic silkworm)   124 107
Nasonia_vitripennis_   (Jewel wasp)   114 70
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   357 242
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   137 99
Linepithema_humile_v1.1   (Argentine ant)   129 90
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   158 120
Solenopsis_invicta_v.2.2.3   (Red fire ant)   128 99
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   136 96
Atta_cephalotes_v1.1 136 100
Camponotus_floridanus_v3.3   (Florida carpenter ant)   137 93
Lucilia_cuprina   (Australian sheep blowfly)   135 87
Drosophila_grimshawi_1.3 149 99
Drosophila_willistoni_1.3 175 123
Drosophila_pseudoobscura_2.13 163 118
Drosophila_persimilis_1.3 161 119
Drosophila_suzukii 174 122
Drosophila_yakuba_1.3 148 106
Drosophila_simulans_1.3 137 98
Drosophila_sechellia_1.3 150 108
Drosophila_melanogaster_76_5   (Fruit fly)   328 219
Drosophila_erecta_1.3 151 107
Drosophila_ananassae_1.3 153 109
Drosophila_virilis_1.2 144 101
Drosophila_mojavensis_1.3 152 104
Megaselia_scalaris_22 88 76
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   230 174
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   218 173
Anopheles_darlingi_22   (American malaria mosquito)   164 128
Anopheles_gambiae_49_3j   (African malaria mosquito)   231 167
Tribolium_castaneum_3.0   (Red flour beetle)   225 168
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   120 81
Acyrthosiphon_pisum_   (Pea aphid)   112 74
Rhodnius_prolixus_22 111 84
Daphnia_pulex_   (Common water flea)   140 116
Strigamia_maritima_22 192 127
Sarcoptes_scabiei 81 59
Tetranychus_urticae_   (Two-spotted spider mite)   93 75
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   120 99
Pristionchus_pacificus_ 52 50
Meloidogyne_incognita_   (Southern root-knot nematode)   62 48
Meloidogyne_hapla_ 32 31
Onchocerca_volvulus_22 61 46
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   89 69
Caenorhabditis_japonica_ 103 81
Caenorhabditis_brenneri_ 307 158
Caenorhabditis_remanei_ 236 130
Caenorhabditis_elegans_76_235   (Roundworm)   290 172
Caenorhabditis_briggsae_2 224 126
Trichinella_spiralis_22 47 41
Hymenolepis_microstoma_ 53 42
Echinococcus_multilocularis_ 64 51
Echinococcus_granulosus_ 61 49
Taenia_solium_   (Pork tapeworm)   62 54
Schistosoma_mansoni_ 71 60
Mnemiopsis_leidyi   (Sea walnut)   76 64
Thelohanellus_kitauei 8 7
Acropora_digitifera_v1.0 117 109
Nematostella_vectensis_1.0   (Starlet sea anemone)   117 105
Hydra_vulgaris 60 56
Amphimedon_queenslandica 136 125
Trichoplax_adhaerens_ 134 117
Proterospongia_sp._ATCC_50818_ 359 196
Monosiga_brevicollis_ 197 116
Sphaeroforma_arctica_JP610_ 82 67
Capsaspora_owczarzaki_ATCC_30864_ 211 162
Conidiobolus_coronatus_NRRL28638_v1.0 69 68
Mortierella_verticillata_NRRL_6337_ 48 43
Phycomyces_blakesleeanus_ 39 34
Rhizopus_oryzae_RA_99-880_ 38 28
Mucor_circinelloides_ 34 25
Rhizomucor_miehei_CAU432_ 35 28
Malassezia_globosa_CBS_7966_ 22 18
Sporisorium_reilianum_22 13 11
Ustilago_maydis_ 13 11
Mixia_osmundae_IAM_14324_v1.0 10 9
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 12 12
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 12 10
Melampsora_laricis-populina_ 20 18
Rhodotorula_graminis_WP1_v1.0 22 20
Sporobolomyces_roseus_IAM_13481_ 19 18
Microbotryum_violaceum_22 14 14
Wallemia_sebi_v1.0 10 8
Sphaerobolus_stellatus_v1.0 33 31
Piloderma_croceum_F_1598_v1.0 21 20
Serpula_lacrymans_var._lacrymans_S7.9_ 15 12
Coniophora_puteana 28 27
Hydnomerulius_pinastri_v2.0 18 15
Paxillus_rubicundulus_Ve08.2h10_v1.0 10 9
Pisolithus_microcarpus_441_v1.0 18 16
Pisolithus_tinctorius_Marx_270_v1.0 22 21
Scleroderma_citrinum_Foug_A_v1.0 18 16
Coprinopsis_cinerea_okayama7_130_v3 15 14
Pleurotus_ostreatus_   (Oyster mushroom)   29 28
Amanita_thiersii_Skay4041_v1.0 14 13
Amanita_muscaria_Koide_v1.0   (Fly agaric)   32 30
Galerina_marginata_v1.0 41 38
Hebeloma_cylindrosporum_h7_v2.0 24 23
Laccaria_bicolor_S238N-H82_ 24 24
Agaricus_bisporus_var._bisporus_ 22 21
Schizophyllum_commune_ 29 28
Stereum_hirsutum_FP-91666_SS1__v1.0 21 21
Heterobasidion_annosum_ 16 15
Gloeophyllum_trabeumv1.0 19 17
Punctularia_strigosozonata_v1.0 12 12
Sebacina_vermifera_MAFF_305830_v1.0 91 86
Fomitiporia_mediterranea_v1.0 19 17
Tulasnella_calospora_AL13/4D_v1.0 33 31
Postia_placenta_ 24 23
Wolfiporia_cocos_MD-104_SS10__v1.0 19 18
Fomitopsis_pinicolav1.0 16 16
Fomitopsis_pinicola_FP-58527_SS1_v3.0 19 18
Phanerochaete_chrysosporium_RP-78_2.1 12 11
Dichomitus_squalens 18 15
Trametes_versicolor_v1.0 26 26
Tremella_mesenterica_   (Witches' butter)   13 12
Daldinia_eschscholzii_EC12_v1.0 14 12
Apiospora_montagnei_NRRL_25634_v1.0 17 14
Magnaporthe_poae_ATCC_64411_22 13 10
Magnaporthe_grisea_70-15_ 11 8
Podospora_anserina_ 12 8
Sporotrichum_thermophile_ATCC_42464_ 16 12
Thielavia_terrestris_NRRL_8126_ 14 11
Chaetomium_globosum_CBS_148.51_ 15 12
Neurospora_tetrasperma_ 14 10
Neurospora_discreta_FGSC_8579_ 13 9
Neurospora_crassa_OR74A_ 16 11
Cryphonectria_parasitica_   (Chestnut blight fungus)   13 11
Verticillium_albo-atrum_VaMs.102_ 11 10
Verticillium_dahliae_VdLs.17_ 11 10
Acremonium_alcalophilumv_1.0 16 13
Glomerella_graminicola_22 12 9
Fusarium_graminearum_ 13 11
Nectria_haematococca_mpVI_ 14 12
Fusarium_oxysporum_f._sp._lycopersici_4286_ 10 9
Fusarium_verticillioides_7600_ 15 11
Trichoderma_asperellum_CBS_433.97_v1.0 15 11
Trichoderma_atroviride_ 14 11
Trichoderma_citrinoviride_v1.0 11 10
Trichoderma_reesei_1.2 12 11
Trichoderma_virens_Gv29-8_ 15 12
Trichoderma_longibrachiatum_ATCC_18648_v1.0 13 10
Trichoderma_harzianum_CBS_226.95_v1.0 13 11
Amorphotheca_resinae_v1.0   (Creosote fungus)   13 10
Botrytis_cinerea_B05.10_ 13 9
Sclerotinia_sclerotiorum_ 14 11
Blumeria_graminis_22 13 10
Didymella_exigua_CBS_183.55_v1.0 15 11
Leptosphaeria_maculans_22 10 8
Setosphaeria_turcica_v1.0 16 12
Cochliobolus_miyabeanus_ATCC_44560_v1.0 12 10
Cochliobolus_victoriae_FI3_v1.0 13 10
Cochliobolus_carbonum_26-R-13_v1.0 12 10
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   14 12
Alternaria_brassicicola_ 9 8
Cochliobolus_lunatus_m118_v2.0 13 10
Pyrenophora_teres_f._teres_22 13 10
Pyrenophora_tritici-repentis_ 11 9
Stagonospora_nodorum_ 14 10
Mycosphaerella_graminicola_IPO323_ 13 10
Zasmidium_cellare_ATCC_36951_v1.0 12 9
Dothistroma_septosporum 13 10
Septoria_musiva_v1.0 13 10
Mycosphaerella_fijiensis_CIRAD86_ 13 10
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 13 11
Paracoccidioides_brasiliensis_Pb18_ 13 11
Coccidioides_posadasii_RMSCC_3488_ 15 11
Coccidioides_immitis_RS_ 16 12
Ajellomyces_dermatitidis_SLH14081_ 15 12
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 14 11
Microsporum_canis_CBS_113480_ 17 13
Trichophyton_equinum_CBS_127.97_ 14 11
Trichophyton_verrucosum_HKI_0517_ 13 10
Arthroderma_benhamiae_CBS_112371_ 14 11
Trichophyton_tonsurans_CBS_112818_ 15 12
Trichophyton_rubrum_CBS_118892_ 14 11
Uncinocarpus_reesii_1704_ 13 10
Aspergillus_zonatus_v1.0 17 13
Penicillium_chrysogenum_Wisconsin_54-1255_ 16 13
Penicillium_chrysogenum_v1.0 17 14
Aspergillus_acidus_v1.0 15 12
Aspergillus_fumigatus_Af293 15 11
Aspergillus_brasiliensis_v1.0 15 12
Aspergillus_nidulans_FGSC_A4_ 18 15
Aspergillus_sydowii_v1.0 18 15
Aspergillus_versicolor_v1.0 20 17
Aspergillus_glaucus 14 11
Aspergillus_carbonarius_ITEM_5010_ 16 12
Neosartorya_fischeri_NRRL_181_ 15 11
Aspergillus_terreus_NIH2624_ 12 11
Aspergillus_tubingensis_v1.0 16 12
Aspergillus_wentii_v1.0 15 12
Aspergillus_oryzae_RIB40_ 14 11
Aspergillus_niger_22 14 12
Aspergillus_niger_ATCC_1015_ 13 10
Aspergillus_flavus_NRRL3357_ 15 12
Aspergillus_clavatus_NRRL_1_ 16 13
Penicillium_marneffei_ATCC_18224_ 12 10
Tuber_melanosporum_Mel28_22 12 9
Tuber_melanosporum_Vittad_   (Perigord truffle)   12 9
Hansenula_polymorpha_v2.0 12 8
Dekkera_bruxellensis_CBS_2499_v2.0 13 12
Pichia_membranifaciensv1.0 12 9
Candida_tanzawaensis_NRRL_Y-17324__v1.0 21 18
Candida_dubliniensis_CD36_ 30 22
Candida_tropicalis_MYA-3404_ 63 50
Candida_parapsilosis_ 26 21
Candida_albicans_SC5314 54 48
Lodderomyces_elongisporus_NRRL_YB-4239_ 15 11
Babjeviella_inositovora_NRRL_Y-12698_v1.0 56 41
Pichia_stipitis_CBS_6054_ 37 29
Candida_guilliermondii_ATCC_6260_ 34 31
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 29 22
Debaromyces_hansenii 18 14
Wickerhamomyces_anomalus 20 17
Pichia_pastoris_GS115_ 20 15
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 8 7
Yarrowia_lipolytica_CLIB122 13 10
Candida_lusitaniae_ATCC_42720_ 21 17
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 20 15
Vanderwaltozyma_polyspora_DSM_70294_ 11 8
Candida_glabrata_CBS138 18 12
Kluyveromyces_thermotolerans_CBS_6340 13 10
Lachancea_kluyveri_ 14 11
Kluyveromyces_waltii 10 7
Ashbya_gossypii_ATCC_10895_ 11 8
Zygosaccharomyces_rouxii_ 10 8
Saccharomyces_mikatae_MIT 17 12
Saccharomyces_paradoxus_MIT 17 12
Saccharomyces_cerevisiae_76   (Baker's yeast)   16 11
Saccharomyces_bayanus_MIT 17 13
Kluyveromyces_lactis 13 10
Schizosaccharomyces_cryophilus_OY26_22 14 11
Schizosaccharomyces_octosporus_yFS286_ 13 10
Schizosaccharomyces_japonicus_yFS275_ 13 10
Schizosaccharomyces_pombe   (Fission yeast)   13 11
Catenaria_anguillulae_PL171_v1.0 64 61
Allomyces_macrogynus_ATCC_38327_ 104 94
Spizellomyces_punctatus_DAOM_BR117_ 39 35
Dictyostelium_discoideum 139 131
Dictyostelium_purpureum_ 377 325
Entamoeba_dispar_1.2 449 323
Entamoeba_invadens_1.2 937 683
Entamoeba_histolytica_1 212 155
Selaginella_moellendorffii_ 490 382
Pinus_taeda   (Loblolly pine)   1961 1479
Picea_abies   (Norway spruce)   843 690
Eucalyptus_grandis_v201   (Rose gum)   2830 1992
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1222 881
Gossypium_raimondii_v221 1900 1430
Citrus_clementina_v165 1860 1367
Citrus_sinensis_v154   (Sweet orange)   1888 1492
Thellungiella_halophila_v173 647 539
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   957 742
Capsella_rubella_v183 745 607
Arabidopsis_lyrata_   (Lyrate rockcress)   626 533
Arabidopsis_thaliana_10   (Thale cress)   741 614
Carica_papaya_   (Papaya)   371 292
Medicago_truncatula_   (Barrel medic)   2491 1925
Phaseolus_vulgaris_v186   (French bean)   1153 879
Glycine_max_v109   (Soybean)   1619 1248
Cucumis_sativus_v122   (Cucumber)   490 397
Fragaria_vesca_   (Wild strawberry)   921 699
Malus_domestica_v196   (Apple)   3040 2317
Prunus_persica_v139   (Peach)   1245 910
Linum_usitatissimum_v200   (Flax)   1052 805
Manihot_esculenta_v147   (Cassava)   984 755
Populus_trichocarpa_v156   (Black cottonwood)   1755 1357
Vitis_vinifera_   (Wine grape)   1060 816
Mimulus_guttatus_v140   (Spotted monkey flower)   832 707
Solanum_lycopersicum_v.2.3   (Tomato)   814 638
Solanum_tuberosum_   (Potato)   1469 1169
Actinidia_chinensis_Hongyang_ 684 553
Aquilegia_coerulea_v195 809 655
Triticum_urartu_22 1203 909
Triticum_aestivum_22   (Bread wheat)   2533 2114
Aegilops_tauschii_22 1572 1209
Brachypodium_distachyon_   (Stiff brome)   788 654
Oryza_barthii_22   (African wild rice)   1621 1159
Oryza_meridionalis_22 1455 1043
Oryza_glumaepatula_22 1671 1203
Oryza_glaberrima   (African rice)   809 666
Oryza_punctata_22 1300 924
Oryza_nivara_22 1887 1314
Oryza_brachyantha_22   (Malo sina)   786 625
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1491 1181
Oryza_sativa_v193   (Rice)   1476 1173
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   895 712
Panicum_virgatum_v202   (Switchgrass)   1984 1611
Setaria_italica_v164   (Foxtail millet)   1148 908
Zea_mays_subsp._mays_   (Maize)   634 533
Zea_mays_v181   (Maize)   702 590
Sorghum_bicolor_   (Sorghum)   882 696
Musa_balbisiana   (Balbis banana)   698 556
Musa_acuminata_22   (Wild Malaysian banana)   748 602
Amborella_trichopoda_22 465 372
Physcomitrella_patens 347 276
Coccomyxa_subellipsoidea_sp._C-169_v2 52 46
Asterochloris_sp._Cgr/DA1pho_v1.0 40 39
Chlorella_variabilis_sp._NC64A_ 88 85
Chlorella_vulgaris_ 39 35
Volvox_carteri_f._nagariensis_ 67 59
Volvox_carteri_v199 63 57
Chlamydomonas_reinhardtii_4.0 83 68
Ostreococcus_sp._RCC809_ 19 15
Ostreococcus_lucimarinus_CCE9901_ 19 15
Ostreococcus_tauri_ 22 18
Bathycoccus_prasinos_ 21 19
Micromonas_sp._RCC299_ 90 74
Micromonas_pusilla_CCMP1545_v3.0 46 41
Cyanidioschyzon_merolae_strain_10D_22 7 7
Cyanidioschyzon_merolae 7 7
Porphyridium_purpureum_02_2012 16 16
Thecamonas_trahens_ATCC_50062_ 126 113
Bigelowiella_natans_CCMP2755_22 95 82
Giardia_lamblia_2.3 28 26
Cyanophora_paradoxa_ 97 89
Leishmania_mexicana_2.4 70 63
Leishmania_major_strain_Friedlin_ 98 84
Leishmania_infantum_JPCM5_2.4 81 74
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 80 69
Trypanosoma_vivax_ 118 81
Trypanosoma_cruzi_strain_CL_Brener 36 34
Trypanosoma_congolense_2.4 50 45
Trypanosoma_brucei_gambiense_v4.1 62 50
Trypanosoma_brucei_TREU927_v4.1 91 63
Ectocarpus_siliculosus 208 197
Aureococcus_anophagefferens_ 75 69
Albugo_laibachii_22 32 28
Pythium_iwayamai_DAOM_BR242034_22 164 153
Pythium_arrhenomanes_ATCC_12531_22 95 90
Pythium_ultimum_v1.7-2 123 114
Pythium_aphanidermatum_DAOM_BR444_22 132 126
Pythium_irregulare_DAOM_BR486_22 137 130
Pythium_vexans_DAOM_BR484_22 121 106
Phytophthora_ramorum_1.1   (Sudden oak death agent)   80 73
Phytophthora_sojae_1.1 94 84
Phytophthora_infestans_T30-4_ 104 96
Phytophthora_capsici_ 86 81
Hyaloperonospora_arabidopsidis_22 17 16
Phaeodactylum_tricornutumCCAP_1055/1 41 39
Fragilariopsis_cylindrus 147 137
Thalassiosira_pseudonana_CCMP1335 58 53
Perkinsus_marinus_ATCC_50983_ 41 39
Paramecium_tetraurelia_ 129 123
Tetrahymena_thermophila_SB210_1_ 60 60
Ichthyophthirius_multifiliis_strain_G5_ 21 21
Cryptosporidium_hominis 4 4
Cryptosporidium_muris 6 6
Cryptosporidium_parvum_Iowa_II 5 5
Neospora_caninum 16 15
Toxoplasma_gondii_VEG 14 12
Toxoplasma_gondii_ME49 14 12
Toxoplasma_gondii_GT1 13 11
Babesia_bovis_T2Bo_ 12 12
Theileria_parva__ 5 5
Theileria_annulata 4 4
Plasmodium_falciparum_3D7_ 13 12
Plasmodium_vivax_SaI-1_7.0 13 12
Plasmodium_knowlesi_strain_H_ 12 11
Plasmodium_yoelii_ssp._yoelii_1_ 16 16
Plasmodium_chabaudi_ 13 11
Plasmodium_berghei_ANKA_ 13 12
Symbiodinium_minutum_clade_B1_v1.2 568 413
Naegleria_gruberi_ 109 105
Trichomonas_vaginalis_ 1659 976
Guillardia_theta_CCMP2712_v1.0_ 191 150
Emiliania_huxleyi_CCMP1516_ 276 239
Leptolyngbya_sp._PCC_7376 8 5
Pseudanabaena_sp._PCC_7367 2 2
Acaryochloris_marina_MBIC11017 9 6
Microcoleus_sp._PCC_7113 7 6
Trichodesmium_erythraeum_IMS101 3 3
Geitlerinema_sp._PCC_7407 2 1
Cyanothece_sp._PCC_8802 2 2
Gloeocapsa_sp._PCC_7428 1 1
Microcystis_aeruginosa_NIES-843 1 1
Rivularia_sp._PCC_7116 13 12
Calothrix_sp._PCC_7507 1 1
Anabaena_variabilis_ATCC_29413 2 1
Nostoc_sp._PCC_7107 2 2
Nostoc_punctiforme_PCC_73102 7 5
Nostoc_sp._PCC_7120 2 1
Anabaena_sp._90 2 1
Mycoplasma_conjunctivae_HRC/581 1 1
Mycoplasma_bovis_HB0801 1 1
Mycoplasma_fermentans_M64 2 2
Mycoplasma_agalactiae_PG2 1 1
Mycoplasma_hyorhinis_GDL-1 1 1
Mycoplasma_hyopneumoniae_168 1 1
Mycoplasma_hominis_ATCC_23114 6 2
Conexibacter_woesei_DSM_14684 1 1
Eggerthella_lenta_DSM_2243 7 4
Slackia_heliotrinireducens_DSM_20476 4 3
Coriobacterium_glomerans_PW2 7 6
Kineococcus_radiotolerans_SRS30216 1 1
Catenulispora_acidiphila_DSM_44928 2 1
Stackebrandtia_nassauensis_DSM_44728 2 2
Thermomonospora_curvata_DSM_43183 1 1
Streptosporangium_roseum_DSM_43021 3 2
Kitasatospora_setae_KM-6054 2 2
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 4 4
Streptomyces_violaceusniger_Tu_4113 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Saccharopolyspora_erythraea_NRRL_2338 1 1
Amycolatopsis_mediterranei_U32 4 4
Kribbella_flavida_DSM_17836 1 1
Propionibacterium_propionicum_F0230a 1 1
Actinoplanes_missouriensis_431 2 2
Sanguibacter_keddieii_DSM_10542 2 2
Intrasporangium_calvum_DSM_43043 2 2
Cellulomonas_fimi_ATCC_484 2 2
Arthrobacter_chlorophenolicus_A6 1 1
Bifidobacterium_animalis_subsp._lactis_Bl-04 1 1
Bifidobacterium_dentium_Bd1 1 1
Arcanobacterium_haemolyticum_DSM_20595 1 1
Herpetosiphon_aurantiacus_DSM_785 9 6
Deinococcus_gobiensis_I-0 1 1
Deinococcus_maricopensis_DSM_21211 1 1
Marinithermus_hydrothermalis_DSM_14884 3 2
Finegoldia_magna_ATCC_29328 6 4
Erysipelothrix_rhusiopathiae_str._Fujisawa 2 2
Natranaerobius_thermophilus_JW/NM-WN-LF 4 3
Clostridiales_genomosp._BVAB3_str._UPII9-5 1 1
Clostridium_clariflavum_DSM_19732 11 7
Eubacterium_siraeum 5 5
Clostridium_cellulolyticum_H10 1 1
Ethanoligenens_harbinense_YUAN-3 5 4
Faecalibacterium_prausnitzii 2 2
Ruminococcus_sp. 12 10
Ruminococcus_bromii 7 7
Ruminococcus_albus_7 41 35
butyrate-producing_bacterium_SM4/1 1 1
Desulfosporosinus_acidiphilus_SJ4 1 1
Desulfosporosinus_orientis_DSM_765 5 3
Syntrophobotulus_glycolicus_DSM_8271 2 1
Desulfitobacterium_hafniense_Y51 4 2
Desulfitobacterium_dehalogenans_ATCC_51507 2 2
Desulfotomaculum_acetoxidans_DSM_771 7 3
Desulfotomaculum_kuznetsovii_DSM_6115 1 1
Acetobacterium_woodii_DSM_1030 9 7
Eubacterium_eligens_ATCC_27750 2 2
Eubacterium_limosum_KIST612 6 5
Filifactor_alocis_ATCC_35896 1 1
Clostridium_phytofermentans_ISDg 8 6
Clostridium_lentocellum_DSM_5427 1 1
[Ruminococcus]_obeum 5 4
Eubacterium_rectale_M104/1 10 9
Eubacterium_rectale_ATCC_33656 2 2
Roseburia_hominis_A2-183 1 1
Roseburia_intestinalis 4 4
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 3 2
Heliobacterium_modesticaldum_Ice1 1 1
Alkaliphilus_metalliredigens_QYMF 2 2
Clostridium_sp._BNL1100 2 2
Clostridium_novyi_NT 2 2
Clostridium_ljungdahlii_DSM_13528 1 1
Clostridium_kluyveri_DSM_555 3 3
Clostridium_beijerinckii_NCIMB_8052 5 5
Clostridium_tetani_E88 7 3
Clostridium_perfringens_ATCC_13124 1 1
Clostridium_cellulovorans_743B 9 4
Clostridium_botulinum_A_str._ATCC_3502 6 4
Clostridium_acetobutylicum_ATCC_824 8 6
Halothermothrix_orenii_H_168 3 2
Halanaerobium_hydrogeniformans 3 3
Halanaerobium_praevalens_DSM_2228 1 1
Enterococcus_sp._7L76 1 1
Enterococcus_hirae_ATCC_9790 2 2
Enterococcus_faecalis_62 1 1
Leuconostoc_sp._C2 1 1
Leuconostoc_kimchii_IMSNU_11154 1 1
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 1 1
Lactobacillus_casei_ATCC_334 1 1
Lactobacillus_sakei_subsp._sakei_23K 1 1
Lactobacillus_plantarum_JDM1 6 6
Lactobacillus_buchneri_NRRL_B-30929 5 5
Lactobacillus_buchneri 5 5
Lactobacillus_brevis_ATCC_367 1 1
Lactobacillus_acidophilus_30SC 1 1
Pediococcus_claussenii_ATCC_BAA-344 2 2
Lactococcus_lactis_subsp._cremoris_MG1363 1 1
Streptococcus_sp._I-P16 1 1
Streptococcus_intermedius_JTH08 1 1
Streptococcus_equi_subsp._equi_4047 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 2 2
Streptococcus_uberis_0140J 1 1
Streptococcus_pyogenes_str._Manfredo 4 3
Streptococcus_agalactiae_A909 2 2
Streptococcus_suis_P1/7 1 1
Streptococcus_gordonii_str._Challis_substr._CH1 1 1
Paenibacillus_terrae_HPL-003 3 1
Paenibacillus_mucilaginosus_3016 3 3
Paenibacillus_polymyxa_M1 2 2
Listeria_welshimeri_serovar_6b_str._SLCC5334 9 9
Listeria_innocua_Clip11262 20 19
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 31 24
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 33 31
Listeria_ivanovii_subsp._ivanovii_PAM_55 31 28
Solibacillus_silvestris_StLB046 1 1
Lysinibacillus_sphaericus_C3-41 3 2
Bacillus_sp._1NLA3E 1 1
Bacillus_weihenstephanensis_KBAB4 4 4
Bacillus_thuringiensis_str._Al_Hakam 3 2
Bacillus_cereus_03BB102 2 1
Bacillus_anthracis_str._A0248 2 1
Bacillus_cellulosilyticus_DSM_2522 1 1
Candidatus_Cloacamonas_acidaminovorans 4 1
Pelodictyon_phaeoclathratiforme_BU-1 3 3
Chlorobium_luteolum_DSM_273 1 1
Chlorobium_chlorochromatii_CaD3 2 2
Chlorobium_phaeobacteroides_DSM_266 2 2
Chlorobium_phaeovibrioides_DSM_265 1 1
Chlorobium_limicola_DSM_245 2 2
Chlorobaculum_parvum_NCIB_8327 1 1
Chlorobium_tepidum_TLS 2 2
Chloroherpeton_thalassium_ATCC_35110 3 3
Prosthecochloris_aestuarii_DSM_271 1 1
Haliscomenobacter_hydrossis_DSM_1100 18 14
Saprospira_grandis_str._Lewin 28 23
Chitinophaga_pinensis_DSM_2588 6 6
Flexibacter_litoralis_DSM_6794 15 11
Candidatus_Amoebophilus_asiaticus_5a2 3 3
Belliella_baltica_DSM_15883 3 1
Cyclobacterium_marinum_DSM_745 10 7
Marivirga_tractuosa_DSM_4126 9 5
Fibrella_aestuarina 6 4
Leadbetterella_byssophila_DSM_17132 1 1
Dyadobacter_fermentans_DSM_18053 10 5
Cytophaga_hutchinsonii_ATCC_33406 14 14
Spirosoma_linguale_DSM_74 3 3
Runella_slithyformis_DSM_19594 3 3
Parabacteroides_distasonis_ATCC_8503 5 3
Tannerella_forsythia_ATCC_43037 11 8
Paludibacter_propionicigenes_WB4 1 1
Odoribacter_splanchnicus_DSM_20712 14 11
Bacteroides_sp._CF50 3 3
Prevotella_melaninogenica_ATCC_25845 11 8
Prevotella_intermedia_17 23 16
Prevotella_denticola_F0289 5 3
Prevotella_ruminicola_23 8 3
Porphyromonas_asaccharolytica_DSM_20707 66 47
Porphyromonas_gingivalis_ATCC_33277 3 3
Alistipes_finegoldii_DSM_17242 12 10
Bacteroides_salanitronis_DSM_18170 2 2
Bacteroides_helcogenes_P_36-108 6 5
Bacteroides_vulgatus_ATCC_8482 2 2
Bacteroides_thetaiotaomicron_VPI-5482 7 7
Bacteroides_fragilis_YCH46 4 4
Pedobacter_saltans_DSM_12145 1 1
Fluviicola_taffensis_DSM_16823 13 9
Owenweeksia_hongkongensis_DSM_17368 2 2
Zunongwangia_profunda_SM-A87 7 4
Krokinobacter_sp._4H-3-7-5 1 1
Lacinutrix_sp._5H-3-7-4 2 2
Maribacter_sp._HTCC2170 4 4
Robiginitalea_biformata_HTCC2501 2 2
Croceibacter_atlanticus_HTCC2559 6 3
Aequorivita_sublithincola_DSM_14238 25 7
Zobellia_galactanivorans 2 2
Muricauda_ruestringensis_DSM_13258 3 3
Cellulophaga_algicola_DSM_14237 16 10
Cellulophaga_lytica_DSM_7489 8 8
Flavobacteriaceae_bacterium_3519-10 2 2
Polaribacter_sp._MED152 9 3
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1 1
Ornithobacterium_rhinotracheale_DSM_15997 1 1
Capnocytophaga_canimorsus_Cc5 5 5
Capnocytophaga_ochracea_DSM_7271 11 11
Weeksella_virosa_DSM_16922 1 1
Flavobacterium_indicum_GPTSA100-9 2 2
Flavobacterium_psychrophilum_JIP02/86 15 15
Flavobacterium_branchiophilum_FL-15 5 5
Flavobacterium_columnare_ATCC_49512 3 2
Flavobacterium_johnsoniae_UW101 22 12
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Candidatus_Protochlamydia_amoebophila_UWE25 10 10
Parachlamydia_acanthamoebae_UV-7 1 1
Simkania_negevensis_Z 2 2
Isosphaera_pallida_ATCC_43644 1 1
Planctomyces_brasiliensis_DSM_5305 3 3
Planctomyces_limnophilus_DSM_3776 2 2
Rhodopirellula_baltica_SH_1 2 2
Pirellula_staleyi_DSM_6068 4 4
Coraliomargarita_akajimensis_DSM_45221 7 2
Fretibacterium_fastidiosum 1 1
Turneriella_parva_DSM_21527 1 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 9 8
Leptospira_interrogans_serovar_Lai_str._IPAV 30 23
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Brachyspira_murdochii_DSM_12563 7 7
Brachyspira_intermedia_PWS/A 14 14
Brachyspira_pilosicoli_95/1000 10 10
Brachyspira_hyodysenteriae_WA1 8 8
Spirochaeta_smaragdinae_DSM_11293 2 2
Sphaerochaeta_coccoides_DSM_17374 1 1
Spirochaeta_caldaria_DSM_7334 3 3
Treponema_azotonutricium_ZAS-9 13 7
Treponema_primitia_ZAS-2 12 9
Treponema_brennaborense_DSM_12168 2 2
Treponema_paraluiscuniculi_Cuniculi_A 1 1
Treponema_succinifaciens_DSM_2489 3 3
Treponema_pallidum_subsp._pallidum_SS14 2 2
Treponema_denticola_ATCC_35405 18 13
Spirochaeta_africana_DSM_8902 5 5
Desulfurispirillum_indicum_S5 2 2
Denitrovibrio_acetiphilus_DSM_12809 1 1
Granulicella_tundricola_MP5ACTX9 1 1
Granulicella_mallensis_MP5ACTX8 1 1
Sebaldella_termitidis_ATCC_33386 1 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 1 1
candidate_division_SR1_bacterium_RAAC1_SR1_1 2 1
Bacteriovorax_marinus_SJ 1 1
Sulfurospirillum_barnesii_SES-3 1 1
Arcobacter_sp._L 1 1
Arcobacter_nitrofigilis_DSM_7299 2 2
Arcobacter_butzleri_RM4018 1 1
Campylobacter_concisus_13826 1 1
Sulfuricurvum_kujiense_DSM_16994 1 1
Helicobacter_hepaticus_ATCC_51449 2 2
Nitratiruptor_sp._SB155-2 1 1
Syntrophobacter_fumaroxidans_MPOB 2 2
Desulfatibacillum_alkenivorans_AK-01 1 1
Geobacter_metallireducens_GS-15 1 1
Babela_massiliensis 1 1
Haliangium_ochraceum_DSM_14365 11 5
Sorangium_cellulosum_'So_ce_56' 12 7
Corallococcus_coralloides_DSM_2259 6 4
Myxococcus_xanthus_DK_1622 8 3
Myxococcus_fulvus_HW-1 9 5
Dechloromonas_aromatica_RCB 2 2
Leptothrix_cholodnii_SP-6 1 1
Burkholderia_phytofirmans_PsJN 1 1
Burkholderia_phymatum_STM815 2 1
Burkholderia_xenovorans_LB400 1 1
Ralstonia_solanacearum_CFBP2957 5 4
Burkholderia_sp._CCGE1002 1 1
Burkholderia_ambifaria_AMMD 1 1
Burkholderia_cenocepacia_HI2424 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 1 1
Burkholderia_gladioli_BSR3 1 1
Burkholderia_glumae_BGR1 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Variovorax_paradoxus_S110 1 1
Acidovorax_citrulli_AAC00-1 5 5
Acidovorax_avenae_subsp._avenae_ATCC_19860 2 2
Comamonas_testosteroni_CNB-2 2 2
Achromobacter_xylosoxidans_A8 1 1
Gallionella_capsiferriformans_ES-2 1 1
Methylotenera_versatilis_301 1 1
Methylotenera_mobilis_JLW8 1 1
Methylobacillus_flagellatus_KT 1 1
Magnetococcus_marinus_MC-1 1 1
Asticcacaulis_excentricus_CB_48 1 1
Sphingomonas_sp._MM-1 1 1
Pseudovibrio_sp._FO-BEG1 2 2
Ruegeria_pomeroyi_DSS-3 1 1
Rhodobacter_capsulatus_SB_1003 1 1
Rhodospirillum_photometricum_DSM_122 1 1
Magnetospirillum_magneticum_AMB-1 1 1
Rhodospirillum_rubrum_F11 2 1
Azospirillum_lipoferum_4B 1 1
Polymorphum_gilvum_SL003B-26A1 1 1
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 1 1
Methylobacterium_sp._4-46 1 1
Methylobacterium_populi_BJ001 1 1
Methylobacterium_nodulans_ORS_2060 1 1
Methylobacterium_radiotolerans_JCM_2831 1 1
Sinorhizobium_fredii_NGR234 1 1
Rhizobium_etli_CIAT_652 1 1
Agrobacterium_sp._H13-3 1 1
Candidatus_Liberibacter_asiaticus_str._psy62 1 1
Bradyrhizobium_japonicum_USDA_110 2 2
Teredinibacter_turnerae_T7901 3 3
Gallibacterium_anatis_UMN179 1 1
Tolumonas_auensis_DSM_9187 1 1
Aeromonas_veronii_B565 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Aliivibrio_salmonicida_LFI1238 3 3
Vibrio_fischeri_MJ11 1 1
Vibrio_harveyi_ATCC_BAA-1116 3 3
Vibrio_vulnificus_MO6-24/O 2 1
Photobacterium_profundum_SS9 2 2
Psychromonas_ingrahamii_37 1 1
Ferrimonas_balearica_DSM_9799 4 3
Shewanella_piezotolerans_WP3 2 2
Shewanella_loihica_PV-4 1 1
Shewanella_halifaxensis_HAW-EB4 4 4
Shewanella_sediminis_HAW-EB3 1 1
Shewanella_denitrificans_OS217 1 1
Shewanella_pealeana_ATCC_700345 8 7
Shewanella_oneidensis_MR-1 1 1
Shewanella_baltica_OS185 1 1
Shewanella_woodyi_ATCC_51908 4 4
Shewanella_sp._MR-4 1 1
Shewanella_violacea_DSS12 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Shewanella_putrefaciens_CN-32 2 2
Colwellia_psychrerythraea_34H 4 3
Pseudoalteromonas_sp._SM9913 2 2
Pseudoalteromonas_atlantica_T6c 1 1
Pseudoalteromonas_haloplanktis_TAC125 1 1
Glaciecola_sp._4H-3-7+YE-5 1 1
Marinobacter_aquaeolei_VT8 1 1
Hahella_chejuensis_KCTC_2396 6 5
Marinomonas_sp._MWYL1 1 1
Methylomonas_methanica_MC09 5 4
Dichelobacter_nodosus_VCS1703A 2 1
Xanthomonas_axonopodis_pv._citri_str._306 2 2
Xanthomonas_oryzae_pv._oryzae_PXO99A 2 2
Xanthomonas_campestris_pv._campestris_str._B100 2 2
Thioalkalivibrio_sp._K90mix 3 1
Coxiella_burnetii_Dugway_5J108-111 1 1
Legionella_longbeachae_NSW150 1 1
gamma_proteobacterium_HdN1 1 1
Providencia_stuartii_MRSN_2154 1 1
Edwardsiella_ictaluri_93-146 4 3
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Yersinia_pseudotuberculosis_IP_31758 4 4
Yersinia_pestis_Pestoides_F 3 3
Yersinia_enterocolitica_subsp._enterocolitica_8081 1 1
Serratia_sp._AS12 1 1
Serratia_plymuthica_AS9 1 1
Pectobacterium_sp._SCC3193 1 1
Sodalis_glossinidius_str._'morsitans' 2 2
Erwinia_amylovora_ATCC_49946 1 1
Cronobacter_sakazakii_ES15 1 1
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 1 1
Shigella_sonnei_Ss046 11 10
Shigella_flexneri_5_str._8401 10 10
Shigella_dysenteriae_Sd197 11 11
Shigella_boydii_CDC_3083-94 9 9
Salmonella_bongori_NCTC_12419 7 5
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 2 2
Escherichia_fergusonii_ATCC_35469 1 1
Citrobacter_rodentium_ICC168 1 1
Azotobacter_vinelandii_DJ 1 1
Pseudomonas_sp._TKP 7 6
Pseudomonas_sp._UW4 5 5
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 2 2
Pseudomonas_entomophila_L48 8 8
Pseudomonas_syringae_pv._tomato_str._DC3000 2 2
Pseudomonas_stutzeri_A1501 1 1
Pseudomonas_fulva_12-X 1 1
Pseudomonas_putida_F1 6 6
Pseudomonas_protegens_Pf-5 2 2
Pseudomonas_fluorescens_SBW25 6 5
Pseudomonas_aeruginosa_UCBPP-PA14 1 1
Pseudomonas_sp._VLB120 6 6
Psychrobacter_cryohalolentis_K5 5 4
Methanosaeta_concilii_GP6 2 1
Methanosarcina_acetivorans_C2A 9 5
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 9 5
Methanoculleus_bourgensis_MS2 3 2
Thermoplasmatales_archaeon_BRNA1 3 2
Methanococcus_vannielii_SB 2 1
Methanobrevibacter_ruminantium_M1 1 1
Acholeplasma_laidlawii_PG-8A 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   394 327
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   255 178
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   249 180
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   74 60
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   278 159
Cryptococcus_neoformans_var._grubii_H99_ 11 10
Cryptococcus_neoformans_B-3501A_ 13 11
Cryptococcus_neoformans_JEC21_ 12 10
Paracoccidioides_brasiliensis_Pb01_ 14 12
Paracoccidioides_brasiliensis_Pb03_ 13 11
Coccidioides_posadasii_str._Silveira_ 15 11
Coccidioides_immitis_RMSCC_3703_ 12 9
Coccidioides_immitis_RMSCC_2394_ 14 11
Coccidioides_immitis_H538.4_ 14 12
Ajellomyces_dermatitidis_ER-3_ 15 12
Histoplasma_capsulatum_H143 15 14
Histoplasma_capsulatum_H88 16 13
Histoplasma_capsulatum_G186AR 15 13
Aspergillus_fumigatus_A1163_ 13 10
Candida_albicans_WO-1_ 57 47
Saccharomyces_cerevisiae_UC5 13 9
Saccharomyces_cerevisiae_PW5 16 11
Saccharomyces_cerevisiae_FL100 8 5
Saccharomyces_cerevisiae_CLIB382 1 1
Saccharomyces_cerevisiae_CLIB324 11 7
Saccharomyces_cerevisiae_CBS7960 13 10
Saccharomyces_cerevisiae_YJM269 15 9
Saccharomyces_cerevisiae_T7 17 11
Saccharomyces_cerevisiae_FostersB 12 9
Saccharomyces_cerevisiae_FostersO 14 12
Saccharomyces_cerevisiae_VL3 13 11
Saccharomyces_cerevisiae_Vin13 12 11
Saccharomyces_cerevisiae_LalvinQA23 16 11
Saccharomyces_cerevisiae_AWRI796 16 11
Saccharomyces_cerevisiae_Sigma1278b 16 11
Saccharomyces_cerevisiae_W303 16 11
Saccharomyces_cerevisiae_JAY291 15 10
Saccharomyces_cerevisiae_AWRI1631 8 6
Saccharomyces_cerevisiae_YPS163 3 2
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_T73 3 2
Saccharomyces_cerevisiae_CLIB215 12 8
Saccharomyces_cerevisiae_Y10 3 3
Saccharomyces_cerevisiae_YJM789_ 16 11
Saccharomyces_cerevisiae_YJM789 16 11
Saccharomyces_cerevisiae_RM11-1a 17 11
Saccharomyces_cerevisiae_RM11-1a_ 15 10
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   17 11
Schizosaccharomyces_pombe_972h-_ 13 11
Batrachochytrium_dendrobatidis_JEL423_ 30 30
Batrachochytrium_dendrobatidis_JAM81_ 36 35
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1135 814
Hordeum_vulgare_22   (Domesticated barley)   2023 1639
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1488 1143
Trypanosoma_brucei_Lister_427_v4.1 96 64
Neospora_caninum_Nc-Liverpool_6.2 16 15
Plasmodium_falciparum_HB3_ 12 11
Plasmodium_falciparum_Dd2_ 6 6
Chamaesiphon_minutus_PCC_6605 20 17
Synechococcus_sp._JA-2-3B'a(2-13) 1 1
Synechococcus_sp._JA-3-3Ab 1 1
Crinalium_epipsammum_PCC_9333 8 8
Oscillatoria_nigro-viridis_PCC_7112 9 8
Oscillatoria_acuminata_PCC_6304 4 3
Cyanothece_sp._PCC_7822 3 3
Cyanothece_sp._PCC_7425 4 2
Cyanothece_sp._PCC_7424 3 3
Cyanothece_sp._ATCC_51142 1 1
Cyanothece_sp._PCC_8801 2 2
Cyanobacterium_aponinum_PCC_10605 2 2
Stanieria_cyanosphaera_PCC_7437 2 1
Calothrix_parietina_Calothrix_sp._PCC_6303 6 3
Cylindrospermum_stagnale_PCC_7417 6 4
Anabaena_cylindrica_PCC_7122 1 1
Mycoplasma_bovis_Hubei-1 1 1
Mycoplasma_bovis_PG45 1 1
Mycoplasma_fermentans_JER 2 2
Mycoplasma_fermentans_PG18 2 2
Mycoplasma_agalactiae 1 1
Mycoplasma_hyorhinis_SK76 1 1
Mycoplasma_hyorhinis_MCLD 1 1
Mycoplasma_hyorhinis_HUB-1 1 1
Mycoplasma_hyorhinis_DBS_1050 1 1
Mycoplasma_hyopneumoniae_168-L 1 1
Mycoplasma_hyopneumoniae_7422 1 1
Mycoplasma_hyopneumoniae_232 1 1
Mycoplasma_hyopneumoniae_7448 1 1
Mycoplasma_hyopneumoniae_J 1 1
Adlercreutzia_equolifaciens_DSM_19450 2 2
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Streptomyces_rapamycinicus_NRRL_5491 3 3
Streptomyces_davawensis_JCM_4913 2 2
Streptomyces_fulvissimus_DSM_40593 3 3
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Saccharothrix_espanaensis_DSM_44229 2 2
Amycolatopsis_mediterranei_RB 4 4
Amycolatopsis_mediterranei_S699 4 4
Amycolatopsis_mediterranei_S699 4 4
Amycolatopsis_orientalis_HCCB10007 1 1
Propionibacterium_acidipropionici_ATCC_4875 1 1
Bifidobacterium_thermophilum_RBL67 2 2
Bifidobacterium_animalis_subsp._lactis_Bl12 1 1
Bifidobacterium_animalis_subsp._lactis_B420 1 1
Bifidobacterium_animalis_subsp._lactis_BLC1 1 1
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 1 1
Bifidobacterium_animalis_subsp._lactis_Bi-07 1 1
Bifidobacterium_animalis_subsp._lactis_V9 1 1
Bifidobacterium_animalis_subsp._lactis_DSM_10140 1 1
Bifidobacterium_animalis_subsp._lactis_BB-12 1 1
Bifidobacterium_animalis_subsp._lactis_AD011 1 1
Actinomyces_odontolyticus_ATCC_17982 1 1
[Eubacterium]_cylindroides_[Eubacterium]_cylindroides_T2-87 2 1
Erysipelothrix_rhusiopathiae_SY1027 2 2
Eubacterium_siraeum_V10Sc8a 6 5
Clostridium_thermocellum_DSM_1313 1 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1 1
Faecalibacterium_prausnitzii_L2-6 1 1
Ruminococcus_champanellensis_18P13 23 13
Desulfosporosinus_meridiei_DSM_13257 1 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1 1
Desulfitobacterium_hafniense_DCB-2 1 1
Desulfotomaculum_gibsoniae_DSM_7213 4 4
Clostridium_difficile_BI1 1 1
Clostridium_difficile_R20291 1 1
Clostridium_difficile_CD196 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Coprococcus_catus_GD/7 2 2
Roseburia_intestinalis_XB6B4 7 5
Clostridium_sp._SY8519 3 2
Clostridium_saccharobutylicum_DSM_13864 6 5
Clostridium_autoethanogenum_DSM_10061 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 12 8
Clostridium_kluyveri_NBRC_12016 3 3
Clostridium_tetani_genome_12124569 6 3
Clostridium_perfringens_SM101 1 1
Clostridium_perfringens_str._13 1 1
Clostridium_pasteurianum_BC1 1 1
Clostridium_botulinum_H04402_065 8 5
Clostridium_botulinum_BKT015925 5 2
Clostridium_botulinum_F_str._230613 7 4
Clostridium_botulinum_F_str._Langeland 8 5
Clostridium_botulinum_E3_str._Alaska_E43 1 1
Clostridium_botulinum_B1_str._Okra 7 5
Clostridium_botulinum_Ba4_str._657 7 4
Clostridium_botulinum_A2_str._Kyoto 8 5
Clostridium_botulinum_A3_str._Loch_Maree 7 4
Clostridium_botulinum_A_str._Hall 5 3
Clostridium_botulinum_A_str._ATCC_19397 6 4
Clostridium_acetobutylicum_DSM_1731 8 6
Clostridium_acetobutylicum_EA_2018 8 6
Halobacteroides_halobius_DSM_5150 1 1
Carnobacterium_maltaromaticum_LMA28 3 3
Enterococcus_mundtii_QU_25 7 7
Enterococcus_faecalis_str._Symbioflor_1 1 1
Enterococcus_faecalis_D32 4 3
Enterococcus_faecalis_OG1RF 1 1
Enterococcus_faecalis_V583 2 2
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 1 1
Lactobacillus_amylovorus_GRL_1112 1 1
Lactobacillus_plantarum_16 6 6
Lactobacillus_plantarum_ZJ316 6 6
Lactobacillus_plantarum_subsp._plantarum_ST-III 5 4
Lactobacillus_plantarum_subsp._plantarum_P-8 4 4
Lactobacillus_plantarum_WCFS1 6 6
Lactobacillus_brevis_KB290 1 1
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 1 1
Lactococcus_lactis_subsp._lactis_IO-1 2 2
Lactococcus_lactis_subsp._lactis_CV56 1 1
Lactococcus_lactis_subsp._lactis_Il1403 1 1
Lactococcus_lactis_subsp._cremoris_KW2 1 1
Lactococcus_lactis_subsp._cremoris_UC509.9 1 1
Lactococcus_lactis_subsp._cremoris_A76 1 1
Lactococcus_lactis_subsp._cremoris_NZ9000 1 1
Lactococcus_lactis_subsp._cremoris_SK11 1 1
Streptococcus_constellatus_subsp._pharyngis_C1050 1 1
Streptococcus_constellatus_subsp._pharyngis_C818 1 1
Streptococcus_constellatus_subsp._pharyngis_C232 1 1
Streptococcus_intermedius_B196 1 1
Streptococcus_intermedius_C270 1 1
Streptococcus_anginosus_C238 1 1
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 2 2
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 2 2
Streptococcus_equi_subsp._zooepidemicus 2 2
Streptococcus_dysgalactiae_subsp._equisimilis_167 2 2
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 2 2
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 4 3
Streptococcus_iniae_SF1 2 2
Streptococcus_pyogenes_HSC5 4 3
Streptococcus_pyogenes_A20 4 3
Streptococcus_pyogenes_MGAS1882 4 3
Streptococcus_pyogenes_MGAS15252 4 3
Streptococcus_pyogenes_Alab49 4 3
Streptococcus_pyogenes_MGAS10750 4 3
Streptococcus_pyogenes_MGAS10270 4 3
Streptococcus_pyogenes_MGAS2096 4 3
Streptococcus_pyogenes_MGAS9429 4 3
Streptococcus_pyogenes_MGAS6180 4 3
Streptococcus_pyogenes_NZ131 5 4
Streptococcus_pyogenes_MGAS8232 4 3
Streptococcus_pyogenes_MGAS10394 4 3
Streptococcus_pyogenes_MGAS315 4 3
Streptococcus_pyogenes_SSI-1 4 3
Streptococcus_pyogenes_M1_476 4 3
Streptococcus_pyogenes_MGAS5005 4 3
Streptococcus_pyogenes_M1_GAS 4 3
Streptococcus_pneumoniae_A026 1 1
Streptococcus_pneumoniae_ST556 1 1
Streptococcus_pneumoniae_SPNA45 1 1
Streptococcus_pneumoniae_INV104 1 1
Streptococcus_pneumoniae_INV200 1 1
Streptococcus_pneumoniae_ATCC_700669 1 1
Streptococcus_pneumoniae_TCH8431/19A 1 1
Streptococcus_pneumoniae_CGSP14 1 1
Streptococcus_pneumoniae_G54 1 1
Streptococcus_pneumoniae_JJA 1 1
Streptococcus_pneumoniae_70585 1 1
Streptococcus_pneumoniae_Hungary19A-6 1 1
Streptococcus_pneumoniae_Taiwan19F-14 1 1
Streptococcus_pneumoniae_670-6B 1 1
Streptococcus_pneumoniae_TIGR4 1 1
Streptococcus_agalactiae_ILRI112 3 2
Streptococcus_agalactiae_ILRI005 2 2
Streptococcus_agalactiae_09mas018883 3 2
Streptococcus_agalactiae_2-22 1 1
Streptococcus_agalactiae_GD201008-001 2 2
Streptococcus_agalactiae_NEM316 3 2
Streptococcus_agalactiae_2603V/R 3 2
Streptococcus_suis_T15 1 1
Streptococcus_suis_TL13 1 1
Streptococcus_suis_SC070731 1 1
Streptococcus_suis_S735 1 1
Streptococcus_suis_ST3 1 1
Streptococcus_suis_D9 1 1
Streptococcus_suis_SS12 1 1
Streptococcus_suis_D12 1 1
Streptococcus_suis_ST1 1 1
Streptococcus_suis_A7 1 1
Streptococcus_suis_JS14 1 1
Streptococcus_suis_BM407 1 1
Streptococcus_suis_SC84 1 1
Streptococcus_suis_GZ1 1 1
Streptococcus_suis_98HAH33 1 1
Streptococcus_suis_05ZYH33 1 1
Thermobacillus_composti_KWC4 1 1
Paenibacillus_sp._Y412MC10 4 4
Paenibacillus_mucilaginosus_KNP414 3 3
Paenibacillus_mucilaginosus_K02 3 3
Paenibacillus_polymyxa_CR1 1 1
Paenibacillus_polymyxa_SC2 1 1
Listeria_monocytogenes_EGD_sequence 26 24
Listeria_monocytogenes_N53-1 18 17
Listeria_monocytogenes_La111 19 18
Listeria_monocytogenes_serotype_4b_str._LL195 32 30
Listeria_monocytogenes_07PF0776 29 27
Listeria_monocytogenes_M7 24 23
Listeria_monocytogenes_J1-220 32 29
Listeria_monocytogenes_J1816 27 27
Listeria_monocytogenes_SLCC2376 29 27
Listeria_monocytogenes_SLCC5850 26 24
Listeria_monocytogenes_ATCC_19117 33 30
Listeria_monocytogenes_L312 33 31
Listeria_monocytogenes_SLCC2479 27 24
Listeria_monocytogenes_SLCC7179 25 23
Listeria_monocytogenes_SLCC2540 40 36
Listeria_monocytogenes_SLCC2378 31 28
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 36 30
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 26 24
Listeria_monocytogenes_serotype_7_str._SLCC2482 33 27
Listeria_monocytogenes_08-5578 24 22
Listeria_monocytogenes_08-5923 24 22
Listeria_monocytogenes_L99 24 22
Listeria_monocytogenes_HCC23 23 22
Listeria_monocytogenes_10403S 26 24
Listeria_monocytogenes_J0161 27 26
Listeria_monocytogenes_Finland_1998 25 23
Listeria_monocytogenes_FSL_R2-561 26 24
Listeria_monocytogenes_serotype_4b_str._F2365 31 28
Listeria_monocytogenes_EGD-e 26 24
Bacillus_toyonensis_BCT-7112 2 2
Bacillus_thuringiensis_HD-771 4 3
Bacillus_thuringiensis_HD-789 3 2
Bacillus_thuringiensis_MC28 2 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 2 2
Bacillus_thuringiensis_YBT-1518 2 2
Bacillus_thuringiensis_Bt407 2 2
Bacillus_thuringiensis_serovar_konkukian_str._97-27 2 2
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 2 2
Bacillus_thuringiensis_BMB171 2 2
Bacillus_thuringiensis_serovar_finitimus_YBT-020 3 2
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 2 2
Bacillus_cereus_FRI-35 2 2
Bacillus_cereus_biovar_anthracis_str._CI 3 2
Bacillus_cereus_AH820 2 2
Bacillus_cereus_AH187 2 2
Bacillus_cereus_B4264 4 4
Bacillus_cereus_G9842 3 3
Bacillus_cereus_Q1 2 2
Bacillus_cereus_F837/76 3 2
Bacillus_cereus_NC7401 2 2
Bacillus_cereus_E33L 3 2
Bacillus_cereus_ATCC_14579 5 5
Bacillus_cereus_ATCC_10987 3 2
Bacillus_anthracis_str._H9401 3 2
Bacillus_anthracis_str._CDC_684 3 2
Bacillus_anthracis_str._'Ames_Ancestor' 2 1
Bacillus_anthracis_str._Sterne 2 1
Bacillus_anthracis_str._Ames 2 1
Chlorobium_phaeobacteroides_BS1 1 1
Echinicola_vietnamensis_DSM_17526 7 4
Emticicia_oligotrophica_DSM_17448 3 3
Prevotella_sp._oral_taxon_299_str._F0039 8 7
Prevotella_dentalis_DSM_3688 9 7
Porphyromonas_gingivalis_TDC60 4 3
Porphyromonas_gingivalis_W83 4 3
Alistipes_shahii_WAL_8301 9 8
Bacteroides_xylanisolvens_XB1A 8 8
Bacteroides_fragilis_638R 5 5
Bacteroides_fragilis_NCTC_9343 3 3
Nonlabens_dokdonensis_DSW-6 12 8
Psychroflexus_torquis_ATCC_700755 13 5
Riemerella_anatipestifer_RA-CH-2 1 1
Riemerella_anatipestifer_RA-CH-1 2 2
Riemerella_anatipestifer_RA-GD 1 1
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Singulisphaera_acidiphila_DSM_18658 2 2
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 6 6
Leptospira_interrogans_serovar_Lai_str._56601 28 22
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 28 22
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Brachyspira_pilosicoli_WesB 6 6
Brachyspira_pilosicoli_B2904 8 8
Brachyspira_pilosicoli_P43/6/78 8 8
Treponema_pedis_str._T_A4 10 10
Treponema_pallidum_str._Fribourg-Blanc 1 1
Treponema_pallidum_subsp._pertenue_str._Gauthier 1 1
Treponema_pallidum_subsp._pertenue_str._CDC2 1 1
Treponema_pallidum_subsp._pertenue_str._SamoaD 1 1
Treponema_pallidum_subsp._pallidum_str._Mexico_A 1 1
Treponema_pallidum_subsp._pallidum_str._Chicago 1 1
Treponema_pallidum_subsp._pallidum_DAL-1 1 1
Treponema_pallidum_subsp._pallidum_str._Nichols 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Arcobacter_butzleri_7h1h 1 1
Arcobacter_butzleri_ED-1 1 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Sorangium_cellulosum_So0157-2 10 6
Myxococcus_stipitatus_DSM_14675 3 2
Burkholderia_phenoliruptrix_BR3459a 1 1
Pandoraea_pnomenusa_3kgm 1 1
Ralstonia_solanacearum_FQY_4 3 2
Ralstonia_solanacearum_Po82 4 4
Ralstonia_solanacearum_PSI07 4 4
Ralstonia_solanacearum_CMR15 5 4
Ralstonia_solanacearum_GMI1000 4 3
Burkholderia_sp._CCGE1003 1 1
Burkholderia_sp._CCGE1001 1 1
Burkholderia_sp._KJ006 1 1
Burkholderia_lata 1 1
Burkholderia_ambifaria_MC40-6 1 1
Burkholderia_cenocepacia_MC0-3 1 1
Burkholderia_cenocepacia_AU_1054 1 1
Burkholderia_cenocepacia_J2315 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_cepacia_GG4 1 1
Variovorax_paradoxus_B4 1 1
Variovorax_paradoxus_EPS 1 1
Taylorella_asinigenitalis_14/45 1 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Leisingera_methylohalidivorans_DSM_14336 1 1
Rhodospirillum_rubrum_ATCC_11170 2 1
Methylobacterium_extorquens_DM4 1 1
Methylobacterium_extorquens_PA1 1 1
Sinorhizobium_fredii_USDA_257 1 1
Sinorhizobium_fredii_HH103 2 2
Bradyrhizobium_japonicum_USDA_6 2 2
Aeromonas_hydrophila_ML09-119 2 2
Vibrio_fischeri_ES114 1 1
Vibrio_nigripulchritudo_VibrioScope 2 1
Vibrio_vulnificus_CMCP6 2 1
Vibrio_vulnificus_YJ016 2 1
Shewanella_sp._W3-18-1 1 1
Shewanella_sp._ANA-3 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS117 1 1
Shewanella_baltica_OS223 1 1
Shewanella_baltica_OS195 1 1
Shewanella_baltica_OS155 1 1
Shewanella_sp._MR-7 1 1
Shewanella_putrefaciens_200 2 2
Glaciecola_psychrophila_170 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 2 2
Alteromonas_macleodii_AltDE1 2 2
Alcanivorax_dieselolei_B5 1 1
Thalassolituus_oleivorans_MIL-1 1 1
Xanthomonas_citri_subsp._citri_Aw12879 2 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 2 2
Xanthomonas_axonopodis_pv._citrumelo_F1 2 2
Xanthomonas_axonopodis_Xac29-1 2 2
Xanthomonas_oryzae_pv._oryzicola_BLS256 2 2
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 2 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 2 2
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 2 2
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 2 2
Thioalkalivibrio_nitratireducens_DSM_14787 1 1
Thioflavicoccus_mobilis_8321 2 1
Coxiella_burnetii_CbuK_Q154 1 1
Coxiella_burnetii_RSA_331 1 1
Morganella_morganii_subsp._morganii_KT 1 1
Yersinia_pseudotuberculosis_PB1/+ 5 4
Yersinia_pseudotuberculosis_YPIII 6 6
Yersinia_pseudotuberculosis_IP_32953 5 4
Yersinia_pestis_biovar_Microtus_str._91001 6 6
Yersinia_pestis_A1122 4 4
Yersinia_pestis_Z176003 7 7
Yersinia_pestis_D182038 7 7
Yersinia_pestis_D106004 7 7
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 6 6
Yersinia_pestis_Nepal516 5 5
Yersinia_pestis_Antiqua 7 7
Yersinia_pestis_Angola 3 3
Yersinia_pestis_CO92 5 5
Yersinia_pestis_KIM10+ 5 5
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1 1
Yersinia_enterocolitica_subsp._palearctica_Y11 1 1
Serratia_sp._AS13 1 1
Serratia_plymuthica_S13 1 1
Serratia_plymuthica_4Rx13 1 1
Serratia_marcescens_WW4 1 1
Serratia_liquefaciens_ATCC_27592 1 1
Erwinia_amylovora_CFBP1430 1 1
Cronobacter_sakazakii_CMCC_45402 1 1
Shigella_sonnei_53G 11 10
Shigella_flexneri_2002017 14 14
Shigella_flexneri_2a_str._2457T 6 6
Shigella_flexneri_2a_str._301 10 10
Shigella_dysenteriae_1617 12 12
Shigella_boydii_Sb227 10 10
Salmonella_bongori_N268-08 8 6
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 7 7
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 2 2
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 2 2
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 2 2
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 3 3
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 3 3
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 3 3
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 3 3
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 2 2
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 2 2
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 2 2
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 4 4
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 2 2
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 2 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 2 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 2 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 2 2
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 3 3
Escherichia_coli_E24377A 2 2
Escherichia_coli_LY180 1 1
Escherichia_coli_APEC_O78 1 1
Escherichia_coli_O7:K1_str._CE10 2 2
Escherichia_coli_O104:H4_str._2009EL-2050 1 1
Escherichia_coli_O104:H4_str._2009EL-2071 1 1
Escherichia_coli_O104:H4_str._2011C-3493 1 1
Escherichia_coli_042 3 3
Escherichia_coli_Xuzhou21 6 6
Escherichia_coli_UMNK88 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_IAI39 2 2
Escherichia_coli_UMN026 3 3
Escherichia_coli_55989 1 1
Escherichia_coli_IAI1 1 1
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_DH1 2 2
Escherichia_coli_DH1 2 2
Escherichia_coli_ATCC_8739 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_SMS-3-5 4 4
Escherichia_coli_SE11 1 1
Escherichia_coli_O103:H2_str._12009 4 4
Escherichia_coli_HS 1 1
Escherichia_coli_ETEC_H10407 1 1
Escherichia_coli_O55:H7_str._RM12579 5 5
Escherichia_coli_O55:H7_str._CB9615 6 6
Escherichia_coli_O26:H11_str._11368 3 3
Escherichia_coli_O111:H-_str._11128 2 2
Escherichia_coli_O157:H7_str._TW14359 5 5
Escherichia_coli_O157:H7_str._EC4115 4 4
Escherichia_coli_O157:H7_str._Sakai 4 4
Escherichia_coli_O157:H7_str._EDL933 5 5
Escherichia_coli_str._K-12_substr._MDS42 1 1
Escherichia_coli_str._K-12_substr._W3110 1 1
Escherichia_coli_str._K-12_substr._DH10B 1 1
Escherichia_coli_B_str._REL606 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_10701 1 1
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_RCH2 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_monteilii_SB3101 7 7
Pseudomonas_monteilii_SB3078 7 7
Pseudomonas_putida_H8234 4 4
Pseudomonas_putida_HB3267 7 7
Pseudomonas_putida_NBRC_14164 6 6
Pseudomonas_putida_DOT-T1E 6 6
Pseudomonas_putida_S16 6 6
Pseudomonas_putida_BIRD-1 6 6
Pseudomonas_putida_W619 7 7
Pseudomonas_putida_ND6 6 6
Pseudomonas_putida_KT2440 6 6
Pseudomonas_putida_GB-1 6 6
Pseudomonas_protegens_CHA0 2 2
Pseudomonas_poae_RE*1-1-14 6 5
Pseudomonas_fluorescens_F113 2 2
Pseudomonas_fluorescens_A506 7 6
Pseudomonas_fluorescens_R124 6 4
Pseudomonas_fluorescens_Pf0-1 8 5
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1
Acinetobacter_baumannii_D1279779 1 1
Methanolobus_psychrophilus_R15 2 1
Methanosarcina_mazei_Tuc01 1 1
Candidatus_Methanomethylophilus_alvus_Mx1201 2 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 12 7
Methanococcus_maripaludis_C6 1 1
Methanococcus_maripaludis_C7 2 2

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   266 223
Pan_troglodytes_69_2.1.4   (Chimpanzee)   251 207
Gorilla_gorilla_69_3.1   (Western gorilla)   274 223
Pongo_abelii_69_2   (Sumatran orangutan)   240 201
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   235 189
Macaca_mulatta_69_1   (Rhesus monkey)   255 210
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   267 222
Otolemur_garnettii_69_3   (Small-eared galago)   265 213
Microcebus_murinus_69_1   (Gray mouse lemur)   211 169
Rattus_norvegicus_69_3.4   (Norway rat)   259 209
Mus_musculus_69_38   (House mouse)   267 218
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   197 163
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   254 210
Cavia_porcellus_69_3   (Domestic guinea pig)   256 215
Oryctolagus_cuniculus_69_2   (Rabbit)   247 201
Ochotona_princeps_69   (American pika)   195 160
Tupaia_belangeri_69   (Northern tree shrew)   177 149
Sus_scrofa_69_10.2   (Pig)   258 213
Bos_taurus_69_3.1   (Cattle)   257 211
Vicugna_pacos_69_1   (Alpaca)   130 112
Tursiops_truncatus_69_1   (Bottlenose dolphin)   221 183
Mustela_putorius_furo_69_1.0   (Domestic ferret)   262 212
Ailuropoda_melanoleuca_69_1   (Giant panda)   252 206
Canis_familiaris_69_3.1   (Dog)   262 217
Felis_catus_69   (Domestic cat)   179 148
Equus_caballus_69_2   (Horse)   249 204
Myotis_lucifugus_69_2.0   (Little brown bat)   240 201
Pteropus_vampyrus_69_1   (Large flying fox)   222 178
Sorex_araneus_69_1   (European shrew)   160 126
Erinaceus_europaeus_69   (Western European hedgehog)   185 151
Procavia_capensis_69_1   (Cape rock hyrax)   178 144
Loxodonta_africana_69_3   (African savanna elephant)   262 216
Echinops_telfairi_69   (Small Madagascar hedgehog)   184 152
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   158 137
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   138 111
Macropus_eugenii_69_1.0   (Tammar wallaby)   204 159
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   241 194
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   243 193
Ornithorhynchus_anatinus_69_5   (Platypus)   219 191
Petromyzon_marinus_69_7.0   (Sea lamprey)   313 294
Meleagris_gallopavo_69_2   (Turkey)   213 173
Gallus_gallus_69_2   (Chicken)   218 174
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   214 173
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   241 201
Anolis_carolinensis_69_2.0   (Green anole)   245 194
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   267 206
Latimeria_chalumnae_69_1   (Coelacanth)   274 226
Gadus_morhua_69_1   (Atlantic cod)   289 232
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   276 231
Takifugu_rubripes_69_4   (Torafugu)   287 235
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   302 246
Oryzias_latipes_69_1   (Japanese medaka)   279 221
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   328 268
Oreochromis_niloticus_69_1.0   (Nile tilapia)   307 250
Danio_rerio_69_9   (Zebrafish)   333 269
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   74 58
Ciona_intestinalis_69   (Vase tunicate)   133 113
Drosophila_melanogaster_69_5   (Fruit fly)   158 109
Caenorhabditis_elegans_69_215   (Roundworm)   240 132
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   16 11
Arabidopsis_thaliana_10   (Thale cress)   633 523

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   848 717
Homo_sapiens__(NCBI_version)   (Human)   389 319
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   264 215
Heliconius_numata__(Incomplete) 25 25
Loa_loa_v3.3_(Request)   (Eye worm)   65 52
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   68 62
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   55 44
Moniliophthora_perniciosa_FA553__(Genome_survey) 4 4
Encephalitozoon_intestinalis__(endoparasite) 5 5
Encephalitozoon_cuniculi_(endoparasite) 5 5
Picea_sitchensis__(Incomplete)   (Sitka spruce)   18 18
Lotus_japonicus__(Early_assembly) 621 547
Malus_x_domestica_(Duplicate)   (Apple)   3041 2318
Ricinus_communis__(Early_assembly)   (Castor bean)   615 482
Nicotiana_benthamiana_0.4.4_(Early_draft) 1025 838
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   778 615
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   814 638
Phoenix_dactylifera__(Early_draft)   (Date palm)   264 212
Acholeplasma_laidlawii_PG-8A_(duplicate) 1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 2 2
NCBI_plasmid_sequences_(Plasmids) 150 132
TargetDB__(Targets) 634 552
Protozoadb_2010_08_(Protozoadb) 5369 3550
STRING_v9.0.5_(STRING) 25714 20060
Protein_Data_Bank_(all_PDB_sequenc) 1199 831
Uniprot_2018_03_genome 298005 237507
NCBI_2017_08_genome 403118 331683
Core_Eukaryotic_Genes_458_(CEGMA) 6 6
UniProt__viral_sequences_(Viral) 51 41
PDB_chains_(SCOP_1.75)_(PDB) 63 49
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1482 1361
NCBI_viral_sequences_(Viral) 229 196

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.