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  Home > SCOP hierarchy > (Phosphotyrosine protein) phosphatases II > Domain combinations

Domain combinations for (Phosphotyrosine protein) phosphatases II superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a (Phosphotyrosine protein) phosphatases II domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   502 427
Pan_troglodytes_76_2.1.4   (Chimpanzee)   114 100
Gorilla_gorilla_76_3.1   (Western gorilla)   164 137
Pongo_abelii_76_2   (Sumatran orangutan)   125 108
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   124 109
Papio_anubis_76   (Olive baboon)   135 118
Macaca_mulatta_76_1   (Rhesus monkey)   253 214
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   303 261
Otolemur_garnettii_76_3   (Small-eared galago)   129 112
Microcebus_murinus_76_1   (Gray mouse lemur)   107 87
Rattus_norvegicus_76_5.0   (Norway rat)   155 127
Mus_musculus_76_38   (House mouse)   276 239
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   114 91
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   118 104
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   122 105
Cavia_porcellus_76_3   (Domestic guinea pig)   114 100
Oryctolagus_cuniculus_76_2   (Rabbit)   130 114
Ochotona_princeps_76   (American pika)   117 93
Tupaia_belangeri_76   (Northern tree shrew)   98 79
Sus_scrofa_76_10.2   (Pig)   133 120
Bos_taurus_76_3.1   (Cattle)   126 108
Ovis_aries_76_3.1   (Sheep)   137 118
Vicugna_pacos_76_1   (Alpaca)   91 72
Tursiops_truncatus_76_1   (Bottlenose dolphin)   116 99
Mustela_putorius_furo_76_1.0   (Domestic ferret)   117 99
Ailuropoda_melanoleuca_76_1   (Giant panda)   137 117
Canis_familiaris_76_3.1   (Dog)   159 133
Felis_catus_76_6.2   (Domestic cat)   130 111
Equus_caballus_76_2   (Horse)   140 120
Myotis_lucifugus_76_2.0   (Little brown bat)   116 104
Pteropus_vampyrus_76_1   (Large flying fox)   115 97
Sorex_araneus_76_1   (European shrew)   86 67
Erinaceus_europaeus_76   (Western European hedgehog)   101 81
Procavia_capensis_76_1   (Cape rock hyrax)   114 88
Loxodonta_africana_76_3   (African savanna elephant)   167 140
Echinops_telfairi_76   (Small Madagascar hedgehog)   107 83
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   174 149
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   89 72
Macropus_eugenii_76_1.0   (Tammar wallaby)   108 86
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   130 115
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   127 109
Ornithorhynchus_anatinus_76_5   (Platypus)   139 120
Saccoglossus_kowalevskii_v3.0 120 100
Petromyzon_marinus_76_7.0   (Sea lamprey)   79 71
Meleagris_gallopavo_76_2   (Turkey)   140 118
Gallus_gallus_76_4   (Chicken)   128 106
Anas_platyrhynchos_76_1.0   (Mallard)   114 97
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   135 116
Ficedula_albicollis_76_1.0   (Collared flycatcher)   119 102
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   132 112
Anolis_carolinensis_76_2.0   (Green anole)   125 109
Xenopus_laevis_   (African clawed frog)   191 167
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   137 121
Latimeria_chalumnae_76_1   (Coelacanth)   162 138
Lepisosteus_oculatus_76   (Spotted gar)   163 138
Gadus_morhua_76_1   (Atlantic cod)   145 122
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   220 173
Takifugu_rubripes_76_4   (Torafugu)   465 345
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   193 160
Oryzias_latipes_76_1   (Japanese medaka)   173 147
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   156 138
Poecilia_formosa_76   (Amazon molly)   165 138
Oreochromis_niloticus_76_1.0   (Nile tilapia)   201 167
Astyanax_mexicanus_76   (Mexican tetra)   173 146
Danio_rerio_76_9   (Zebrafish)   300 256
Oikopleura_dioica 46 40
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   157 113
Ciona_intestinalis_76   (Vase tunicate)   72 56
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   148 118
Adineta_vaga 224 200
Octopus_bimaculoides_280 99 88
Crassostrea_gigas_22   (Pacific oyster)   217 148
Lottia_gigantea_   (Owl limpet)   95 87
Helobdella_robusta_ 111 95
Capitella_sp._I_ 205 172
Danaus_plexippus_OGS1.0   (Monarch butterfly)   47 41
Heliconius_melpomene_   (Postman butterfly)   44 38
Bombyx_mori_   (Domestic silkworm)   51 46
Nasonia_vitripennis_   (Jewel wasp)   38 32
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   126 103
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   44 38
Linepithema_humile_v1.1   (Argentine ant)   46 41
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   50 42
Solenopsis_invicta_v.2.2.3   (Red fire ant)   60 48
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   40 35
Atta_cephalotes_v1.1 42 38
Camponotus_floridanus_v3.3   (Florida carpenter ant)   47 41
Lucilia_cuprina   (Australian sheep blowfly)   44 40
Drosophila_grimshawi_1.3 46 41
Drosophila_willistoni_1.3 44 39
Drosophila_pseudoobscura_2.13 44 39
Drosophila_persimilis_1.3 42 39
Drosophila_suzukii 43 37
Drosophila_yakuba_1.3 44 39
Drosophila_simulans_1.3 41 37
Drosophila_sechellia_1.3 49 44
Drosophila_melanogaster_76_5   (Fruit fly)   137 119
Drosophila_erecta_1.3 41 37
Drosophila_ananassae_1.3 43 38
Drosophila_virilis_1.2 43 38
Drosophila_mojavensis_1.3 43 38
Megaselia_scalaris_22 30 29
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   50 44
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   39 34
Anopheles_darlingi_22   (American malaria mosquito)   34 30
Anopheles_gambiae_49_3j   (African malaria mosquito)   47 41
Tribolium_castaneum_3.0   (Red flour beetle)   65 50
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   45 39
Acyrthosiphon_pisum_   (Pea aphid)   31 28
Rhodnius_prolixus_22 39 35
Daphnia_pulex_   (Common water flea)   90 76
Strigamia_maritima_22 61 55
Sarcoptes_scabiei 48 42
Tetranychus_urticae_   (Two-spotted spider mite)   43 39
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   53 47
Pristionchus_pacificus_ 104 100
Meloidogyne_incognita_   (Southern root-knot nematode)   69 63
Meloidogyne_hapla_ 43 40
Onchocerca_volvulus_22 66 62
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   107 98
Caenorhabditis_japonica_ 97 90
Caenorhabditis_brenneri_ 176 170
Caenorhabditis_remanei_ 181 169
Caenorhabditis_elegans_76_235   (Roundworm)   209 177
Caenorhabditis_briggsae_2 113 106
Trichinella_spiralis_22 43 41
Hymenolepis_microstoma_ 58 50
Echinococcus_multilocularis_ 55 47
Echinococcus_granulosus_ 50 43
Taenia_solium_   (Pork tapeworm)   55 48
Schistosoma_mansoni_ 61 54
Mnemiopsis_leidyi   (Sea walnut)   54 49
Thelohanellus_kitauei 12 12
Acropora_digitifera_v1.0 86 71
Nematostella_vectensis_1.0   (Starlet sea anemone)   112 91
Hydra_vulgaris 77 64
Amphimedon_queenslandica 186 150
Trichoplax_adhaerens_ 52 46
Proterospongia_sp._ATCC_50818_ 75 72
Monosiga_brevicollis_ 69 65
Sphaeroforma_arctica_JP610_ 41 39
Capsaspora_owczarzaki_ATCC_30864_ 40 37
Conidiobolus_coronatus_NRRL28638_v1.0 12 12
Mortierella_verticillata_NRRL_6337_ 35 33
Phycomyces_blakesleeanus_ 34 31
Rhizopus_oryzae_RA_99-880_ 32 29
Mucor_circinelloides_ 38 33
Rhizomucor_miehei_CAU432_ 27 24
Malassezia_globosa_CBS_7966_ 34 26
Sporisorium_reilianum_22 20 16
Ustilago_maydis_ 20 16
Mixia_osmundae_IAM_14324_v1.0 21 17
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 19 15
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 18 14
Melampsora_laricis-populina_ 19 15
Rhodotorula_graminis_WP1_v1.0 17 14
Sporobolomyces_roseus_IAM_13481_ 15 13
Microbotryum_violaceum_22 22 18
Wallemia_sebi_v1.0 13 10
Sphaerobolus_stellatus_v1.0 28 23
Piloderma_croceum_F_1598_v1.0 31 25
Serpula_lacrymans_var._lacrymans_S7.9_ 32 27
Coniophora_puteana 21 19
Hydnomerulius_pinastri_v2.0 24 20
Paxillus_rubicundulus_Ve08.2h10_v1.0 20 17
Pisolithus_microcarpus_441_v1.0 22 19
Pisolithus_tinctorius_Marx_270_v1.0 23 19
Scleroderma_citrinum_Foug_A_v1.0 25 21
Coprinopsis_cinerea_okayama7_130_v3 23 20
Pleurotus_ostreatus_   (Oyster mushroom)   26 23
Amanita_thiersii_Skay4041_v1.0 25 20
Amanita_muscaria_Koide_v1.0   (Fly agaric)   26 22
Galerina_marginata_v1.0 28 24
Hebeloma_cylindrosporum_h7_v2.0 26 22
Laccaria_bicolor_S238N-H82_ 26 22
Agaricus_bisporus_var._bisporus_ 25 19
Schizophyllum_commune_ 25 21
Stereum_hirsutum_FP-91666_SS1__v1.0 24 19
Heterobasidion_annosum_ 23 19
Gloeophyllum_trabeumv1.0 27 22
Punctularia_strigosozonata_v1.0 22 18
Sebacina_vermifera_MAFF_305830_v1.0 21 18
Fomitiporia_mediterranea_v1.0 34 30
Tulasnella_calospora_AL13/4D_v1.0 20 18
Postia_placenta_ 36 32
Wolfiporia_cocos_MD-104_SS10__v1.0 23 20
Fomitopsis_pinicolav1.0 29 25
Fomitopsis_pinicola_FP-58527_SS1_v3.0 29 25
Phanerochaete_chrysosporium_RP-78_2.1 22 18
Dichomitus_squalens 25 20
Trametes_versicolor_v1.0 27 23
Tremella_mesenterica_   (Witches' butter)   21 17
Daldinia_eschscholzii_EC12_v1.0 16 14
Apiospora_montagnei_NRRL_25634_v1.0 18 16
Magnaporthe_poae_ATCC_64411_22 17 15
Magnaporthe_grisea_70-15_ 18 16
Podospora_anserina_ 17 15
Sporotrichum_thermophile_ATCC_42464_ 15 13
Thielavia_terrestris_NRRL_8126_ 14 12
Chaetomium_globosum_CBS_148.51_ 16 14
Neurospora_tetrasperma_ 16 14
Neurospora_discreta_FGSC_8579_ 16 14
Neurospora_crassa_OR74A_ 16 14
Cryphonectria_parasitica_   (Chestnut blight fungus)   15 13
Verticillium_albo-atrum_VaMs.102_ 12 10
Verticillium_dahliae_VdLs.17_ 14 12
Acremonium_alcalophilumv_1.0 15 13
Glomerella_graminicola_22 17 15
Fusarium_graminearum_ 16 14
Nectria_haematococca_mpVI_ 18 16
Fusarium_oxysporum_f._sp._lycopersici_4286_ 17 15
Fusarium_verticillioides_7600_ 16 14
Trichoderma_asperellum_CBS_433.97_v1.0 18 16
Trichoderma_atroviride_ 19 17
Trichoderma_citrinoviride_v1.0 16 15
Trichoderma_reesei_1.2 18 16
Trichoderma_virens_Gv29-8_ 16 14
Trichoderma_longibrachiatum_ATCC_18648_v1.0 17 15
Trichoderma_harzianum_CBS_226.95_v1.0 19 17
Amorphotheca_resinae_v1.0   (Creosote fungus)   16 14
Botrytis_cinerea_B05.10_ 18 15
Sclerotinia_sclerotiorum_ 15 14
Blumeria_graminis_22 10 9
Didymella_exigua_CBS_183.55_v1.0 16 14
Leptosphaeria_maculans_22 16 13
Setosphaeria_turcica_v1.0 17 14
Cochliobolus_miyabeanus_ATCC_44560_v1.0 16 14
Cochliobolus_victoriae_FI3_v1.0 17 14
Cochliobolus_carbonum_26-R-13_v1.0 17 14
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   16 14
Alternaria_brassicicola_ 15 13
Cochliobolus_lunatus_m118_v2.0 17 14
Pyrenophora_teres_f._teres_22 16 14
Pyrenophora_tritici-repentis_ 15 13
Stagonospora_nodorum_ 17 14
Mycosphaerella_graminicola_IPO323_ 17 15
Zasmidium_cellare_ATCC_36951_v1.0 17 15
Dothistroma_septosporum 17 15
Septoria_musiva_v1.0 16 14
Mycosphaerella_fijiensis_CIRAD86_ 14 12
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 18 16
Paracoccidioides_brasiliensis_Pb18_ 16 14
Coccidioides_posadasii_RMSCC_3488_ 16 14
Coccidioides_immitis_RS_ 17 15
Ajellomyces_dermatitidis_SLH14081_ 16 14
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 14 13
Microsporum_canis_CBS_113480_ 16 14
Trichophyton_equinum_CBS_127.97_ 16 14
Trichophyton_verrucosum_HKI_0517_ 16 14
Arthroderma_benhamiae_CBS_112371_ 15 13
Trichophyton_tonsurans_CBS_112818_ 16 14
Trichophyton_rubrum_CBS_118892_ 17 14
Uncinocarpus_reesii_1704_ 15 13
Aspergillus_zonatus_v1.0 16 14
Penicillium_chrysogenum_Wisconsin_54-1255_ 13 12
Penicillium_chrysogenum_v1.0 17 15
Aspergillus_acidus_v1.0 15 13
Aspergillus_fumigatus_Af293 14 12
Aspergillus_brasiliensis_v1.0 15 13
Aspergillus_nidulans_FGSC_A4_ 16 14
Aspergillus_sydowii_v1.0 19 17
Aspergillus_versicolor_v1.0 18 16
Aspergillus_glaucus 16 14
Aspergillus_carbonarius_ITEM_5010_ 15 13
Neosartorya_fischeri_NRRL_181_ 17 15
Aspergillus_terreus_NIH2624_ 17 15
Aspergillus_tubingensis_v1.0 17 14
Aspergillus_wentii_v1.0 17 15
Aspergillus_oryzae_RIB40_ 16 14
Aspergillus_niger_22 15 13
Aspergillus_niger_ATCC_1015_ 11 10
Aspergillus_flavus_NRRL3357_ 16 14
Aspergillus_clavatus_NRRL_1_ 17 15
Penicillium_marneffei_ATCC_18224_ 15 13
Tuber_melanosporum_Mel28_22 18 16
Tuber_melanosporum_Vittad_   (Perigord truffle)   19 17
Hansenula_polymorpha_v2.0 16 14
Dekkera_bruxellensis_CBS_2499_v2.0 17 15
Pichia_membranifaciensv1.0 17 15
Candida_tanzawaensis_NRRL_Y-17324__v1.0 19 17
Candida_dubliniensis_CD36_ 21 19
Candida_tropicalis_MYA-3404_ 20 18
Candida_parapsilosis_ 17 15
Candida_albicans_SC5314 21 19
Lodderomyces_elongisporus_NRRL_YB-4239_ 19 16
Babjeviella_inositovora_NRRL_Y-12698_v1.0 19 17
Pichia_stipitis_CBS_6054_ 19 17
Candida_guilliermondii_ATCC_6260_ 19 17
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 18 17
Debaromyces_hansenii 20 19
Wickerhamomyces_anomalus 17 16
Pichia_pastoris_GS115_ 17 15
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 15 13
Yarrowia_lipolytica_CLIB122 17 16
Candida_lusitaniae_ATCC_42720_ 18 16
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 19 17
Vanderwaltozyma_polyspora_DSM_70294_ 16 15
Candida_glabrata_CBS138 15 14
Kluyveromyces_thermotolerans_CBS_6340 16 15
Lachancea_kluyveri_ 17 15
Kluyveromyces_waltii 16 15
Ashbya_gossypii_ATCC_10895_ 16 15
Zygosaccharomyces_rouxii_ 17 15
Saccharomyces_mikatae_MIT 17 15
Saccharomyces_paradoxus_MIT 17 15
Saccharomyces_cerevisiae_76   (Baker's yeast)   16 15
Saccharomyces_bayanus_MIT 16 14
Kluyveromyces_lactis 15 14
Schizosaccharomyces_cryophilus_OY26_22 11 10
Schizosaccharomyces_octosporus_yFS286_ 10 9
Schizosaccharomyces_japonicus_yFS275_ 10 9
Schizosaccharomyces_pombe   (Fission yeast)   10 9
Catenaria_anguillulae_PL171_v1.0 33 30
Allomyces_macrogynus_ATCC_38327_ 58 54
Spizellomyces_punctatus_DAOM_BR117_ 31 27
Dictyostelium_discoideum 48 47
Dictyostelium_purpureum_ 46 44
Entamoeba_dispar_1.2 45 45
Entamoeba_invadens_1.2 60 60
Entamoeba_histolytica_1 48 48
Selaginella_moellendorffii_ 87 81
Pinus_taeda   (Loblolly pine)   31 31
Picea_abies   (Norway spruce)   27 25
Eucalyptus_grandis_v201   (Rose gum)   73 67
Theobroma_cacao_B97-61/B2_v1   (Cacao)   33 31
Gossypium_raimondii_v221 213 194
Citrus_clementina_v165 53 51
Citrus_sinensis_v154   (Sweet orange)   87 79
Thellungiella_halophila_v173 41 39
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   52 49
Capsella_rubella_v183 38 36
Arabidopsis_lyrata_   (Lyrate rockcress)   40 38
Arabidopsis_thaliana_10   (Thale cress)   51 47
Carica_papaya_   (Papaya)   29 27
Medicago_truncatula_   (Barrel medic)   60 56
Phaseolus_vulgaris_v186   (French bean)   46 44
Glycine_max_v109   (Soybean)   87 77
Cucumis_sativus_v122   (Cucumber)   52 50
Fragaria_vesca_   (Wild strawberry)   35 33
Malus_domestica_v196   (Apple)   74 69
Prunus_persica_v139   (Peach)   36 34
Linum_usitatissimum_v200   (Flax)   57 52
Manihot_esculenta_v147   (Cassava)   43 42
Populus_trichocarpa_v156   (Black cottonwood)   57 51
Vitis_vinifera_   (Wine grape)   31 29
Mimulus_guttatus_v140   (Spotted monkey flower)   31 29
Solanum_lycopersicum_v.2.3   (Tomato)   43 41
Solanum_tuberosum_   (Potato)   50 50
Actinidia_chinensis_Hongyang_ 41 40
Aquilegia_coerulea_v195 91 83
Triticum_urartu_22 27 26
Triticum_aestivum_22   (Bread wheat)   99 96
Aegilops_tauschii_22 30 29
Brachypodium_distachyon_   (Stiff brome)   46 44
Oryza_barthii_22   (African wild rice)   59 54
Oryza_meridionalis_22 52 48
Oryza_glumaepatula_22 76 74
Oryza_glaberrima   (African rice)   34 32
Oryza_punctata_22 61 58
Oryza_nivara_22 73 70
Oryza_brachyantha_22   (Malo sina)   38 36
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   58 56
Oryza_sativa_v193   (Rice)   58 56
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   47 46
Panicum_virgatum_v202   (Switchgrass)   72 71
Setaria_italica_v164   (Foxtail millet)   54 52
Zea_mays_subsp._mays_   (Maize)   69 65
Zea_mays_v181   (Maize)   67 63
Sorghum_bicolor_   (Sorghum)   32 29
Musa_balbisiana   (Balbis banana)   48 47
Musa_acuminata_22   (Wild Malaysian banana)   57 56
Amborella_trichopoda_22 24 22
Physcomitrella_patens 42 37
Coccomyxa_subellipsoidea_sp._C-169_v2 20 19
Asterochloris_sp._Cgr/DA1pho_v1.0 24 22
Chlorella_variabilis_sp._NC64A_ 20 18
Chlorella_vulgaris_ 21 20
Volvox_carteri_f._nagariensis_ 24 22
Volvox_carteri_v199 22 20
Chlamydomonas_reinhardtii_4.0 26 24
Ostreococcus_sp._RCC809_ 9 9
Ostreococcus_lucimarinus_CCE9901_ 10 10
Ostreococcus_tauri_ 7 7
Bathycoccus_prasinos_ 8 8
Micromonas_sp._RCC299_ 10 10
Micromonas_pusilla_CCMP1545_v3.0 12 12
Cyanidioschyzon_merolae_strain_10D_22 12 11
Cyanidioschyzon_merolae 12 11
Porphyridium_purpureum_02_2012 16 16
Thecamonas_trahens_ATCC_50062_ 48 45
Bigelowiella_natans_CCMP2755_22 85 82
Giardia_lamblia_2.3 12 10
Cyanophora_paradoxa_ 30 29
Leishmania_mexicana_2.4 34 30
Leishmania_major_strain_Friedlin_ 35 30
Leishmania_infantum_JPCM5_2.4 34 30
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 32 28
Trypanosoma_vivax_ 25 22
Trypanosoma_cruzi_strain_CL_Brener 32 28
Trypanosoma_congolense_2.4 31 29
Trypanosoma_brucei_gambiense_v4.1 27 24
Trypanosoma_brucei_TREU927_v4.1 28 25
Ectocarpus_siliculosus 34 30
Aureococcus_anophagefferens_ 34 32
Albugo_laibachii_22 39 36
Pythium_iwayamai_DAOM_BR242034_22 53 47
Pythium_arrhenomanes_ATCC_12531_22 46 39
Pythium_ultimum_v1.7-2 54 47
Pythium_aphanidermatum_DAOM_BR444_22 53 48
Pythium_irregulare_DAOM_BR486_22 53 48
Pythium_vexans_DAOM_BR484_22 49 45
Phytophthora_ramorum_1.1   (Sudden oak death agent)   44 41
Phytophthora_sojae_1.1 47 44
Phytophthora_infestans_T30-4_ 46 44
Phytophthora_capsici_ 48 46
Hyaloperonospora_arabidopsidis_22 31 30
Phaeodactylum_tricornutumCCAP_1055/1 12 10
Fragilariopsis_cylindrus 29 27
Thalassiosira_pseudonana_CCMP1335 18 16
Perkinsus_marinus_ATCC_50983_ 40 34
Paramecium_tetraurelia_ 178 175
Tetrahymena_thermophila_SB210_1_ 72 65
Ichthyophthirius_multifiliis_strain_G5_ 34 33
Cryptosporidium_hominis 8 7
Cryptosporidium_muris 7 6
Cryptosporidium_parvum_Iowa_II 8 7
Neospora_caninum 11 10
Toxoplasma_gondii_VEG 12 11
Toxoplasma_gondii_ME49 13 12
Toxoplasma_gondii_GT1 13 12
Babesia_bovis_T2Bo_ 4 4
Theileria_parva__ 2 2
Theileria_annulata 2 2
Plasmodium_falciparum_3D7_ 5 5
Plasmodium_vivax_SaI-1_7.0 6 6
Plasmodium_knowlesi_strain_H_ 7 7
Plasmodium_yoelii_ssp._yoelii_1_ 5 5
Plasmodium_chabaudi_ 6 6
Plasmodium_berghei_ANKA_ 6 6
Symbiodinium_minutum_clade_B1_v1.2 100 96
Naegleria_gruberi_ 52 51
Trichomonas_vaginalis_ 28 23
Guillardia_theta_CCMP2712_v1.0_ 113 90
Emiliania_huxleyi_CCMP1516_ 72 70
Thermobaculum_terrenum_ATCC_BAA-798 2 2
Leptolyngbya_sp._PCC_7376 1 1
Pseudanabaena_sp._PCC_7367 1 1
Acaryochloris_marina_MBIC11017 3 3
Synechococcus_sp._PCC_6312 3 3
Synechococcus_sp._CC9311 1 1
Synechococcus_elongatus_PCC_7942 2 2
Prochlorococcus_marinus_str._MIT_9515 1 1
Microcoleus_sp._PCC_7113 2 2
Gloeocapsa_sp._PCC_7428 2 2
Halothece_sp._PCC_7418 2 2
Gloeobacter_violaceus_PCC_7421 2 2
Rivularia_sp._PCC_7116 3 3
Calothrix_sp._PCC_7507 2 2
Anabaena_variabilis_ATCC_29413 4 4
Nostoc_sp._PCC_7107 2 2
Nostoc_punctiforme_PCC_73102 4 4
Nostoc_sp._PCC_7120 2 2
Nostoc_sp._PCC_7524 1 1
Mycoplasma_leachii_99/014/6 1 1
Mycoplasma_mycoides_subsp._capri_LC_str._95010 1 1
Mycoplasma_capricolum_subsp._capricolum_ATCC_27343 1 1
Mycoplasma_putrefaciens_KS1 1 1
Conexibacter_woesei_DSM_14684 1 1
Cryptobacterium_curtum_DSM_15641 1 1
Eggerthella_sp._YY7918 1 1
Eggerthella_lenta_DSM_2243 2 2
Slackia_heliotrinireducens_DSM_20476 2 2
Olsenella_uli_DSM_7084 2 2
Atopobium_parvulum_DSM_20469 1 1
Coriobacterium_glomerans_PW2 1 1
Rubrobacter_xylanophilus_DSM_9941 1 1
Ilumatobacter_coccineus 2 2
Acidimicrobium_ferrooxidans_DSM_10331 2 2
Thermobispora_bispora_DSM_43833 2 2
Nakamurella_multipartita_DSM_44233 5 5
Modestobacter_marinus 3 3
Blastococcus_saxobsidens_DD2 2 2
Geodermatophilus_obscurus_DSM_43160 3 3
Kineococcus_radiotolerans_SRS30216 2 2
Catenulispora_acidiphila_DSM_44928 7 7
Stackebrandtia_nassauensis_DSM_44728 3 3
Frankia_symbiont_of_Datisca_glomerata 6 6
Frankia_sp._EAN1pec 4 4
Frankia_alni_ACN14a 5 4
Thermobifida_fusca_YX 2 2
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 4 4
Thermomonospora_curvata_DSM_43183 3 3
Streptosporangium_roseum_DSM_43021 4 4
Kitasatospora_setae_KM-6054 9 9
Streptomyces_coelicolor_A3(2) 3 3
Streptomyces_sp._PAMC26508 3 3
Streptomyces_flavogriseus_ATCC_33331 3 3
Streptomyces_sp._SirexAA-E 3 3
Streptomyces_griseus_subsp._griseus_NBRC_13350 3 3
Streptomyces_bingchenggensis_BCW-1 3 3
Streptomyces_violaceusniger_Tu_4113 2 2
Streptomyces_avermitilis_MA-4680 4 4
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_scabiei_87.22 3 3
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 3 3
Actinosynnema_mirum_DSM_43827 2 2
Saccharomonospora_viridis_DSM_43017 2 2
Pseudonocardia_dioxanivorans_CB1190 4 4
Saccharopolyspora_erythraea_NRRL_2338 2 2
Amycolatopsis_mediterranei_U32 3 3
Kribbella_flavida_DSM_17836 3 3
Nocardioides_sp._JS614 1 1
Propionibacterium_propionicum_F0230a 1 1
Microlunatus_phosphovorus_NM-1 3 3
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 1 1
Salinispora_arenicola_CNS-205 3 3
Salinispora_tropica_CNB-440 3 3
Verrucosispora_maris_AB-18-032 3 3
Micromonospora_sp._L5 5 5
Micromonospora_aurantiaca_ATCC_27029 5 5
Actinoplanes_sp._N902-109 3 3
Actinoplanes_sp._SE50/110 5 5
Actinoplanes_missouriensis_431 4 4
Segniliparus_rotundus_DSM_44985 1 1
Tsukamurella_paurometabola_DSM_20162 2 2
Gordonia_sp._KTR9 5 5
Gordonia_polyisoprenivorans_VH2 4 4
Gordonia_bronchialis_DSM_43247 3 3
Rhodococcus_jostii_RHA1 4 4
Rhodococcus_equi_103S 5 5
Rhodococcus_opacus_B4 9 9
Rhodococcus_erythropolis_PR4 10 10
Nocardia_cyriacigeorgica_GUH-2 3 3
Nocardia_farcinica_IFM_10152 2 2
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Mycobacterium_abscessus_ATCC_19977 1 1
Mycobacterium_sp._JLS 2 2
Mycobacterium_intracellulare_ATCC_13950 1 1
Mycobacterium_avium_104 1 1
Mycobacterium_vanbaalenii_PYR-1 4 4
Mycobacterium_canettii_CIPT_140010059 1 1
Mycobacterium_africanum_GM041182 1 1
Mycobacterium_tuberculosis_KZN_1435 1 1
Mycobacterium_tuberculosis 1 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1 1
Mycobacterium_rhodesiae_NBB3 2 2
Mycobacterium_ulcerans_Agy99 1 1
Mycobacterium_gilvum_PYR-GCK 1 1
Mycobacterium_chubuense_NBB4 1 1
Mycobacterium_marinum_M 1 1
Mycobacterium_smegmatis_str._MC2_155 2 2
Corynebacterium_variabile_DSM_44702 1 1
Sanguibacter_keddieii_DSM_10542 1 1
Beutenbergia_cavernae_DSM_12333 1 1
Leifsonia_xyli_subsp._xyli_str._CTCB07 1 1
Microbacterium_testaceum_StLB037 2 2
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1 1
Intrasporangium_calvum_DSM_43043 2 2
Cellulomonas_flavigena_DSM_20109 3 3
Cellulomonas_fimi_ATCC_484 2 2
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_chlorophenolicus_A6 1 1
Arthrobacter_aurescens_TC1 3 3
Arthrobacter_arilaitensis_Re117 2 2
Arthrobacter_sp._Rue61a 3 3
Arthrobacter_sp._FB24 2 2
Renibacterium_salmoninarum_ATCC_33209 1 1
Bifidobacterium_animalis_subsp._lactis_Bl-04 1 1
Arcanobacterium_haemolyticum_DSM_20595 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 2 2
Anaerolinea_thermophila_UNI-1 1 1
Herpetosiphon_aurantiacus_DSM_785 2 2
Roseiflexus_sp._RS-1 3 3
Roseiflexus_castenholzii_DSM_13941 3 3
Chloroflexus_sp._MS-G 2 2
Chloroflexus_sp._Y-400-fl 3 3
Chloroflexus_aggregans_DSM_9485 2 2
Chloroflexus_aurantiacus_J-10-fl 3 3
Deinococcus_gobiensis_I-0 2 2
Deinococcus_deserti_VCD115 2 2
Deinococcus_geothermalis_DSM_11300 1 1
Deinococcus_proteolyticus_MRP 2 2
Deinococcus_radiodurans_R1 2 2
Anaerococcus_prevotii_DSM_20548 1 1
Megasphaera_elsdenii_DSM_20460 1 1
Acidaminococcus_intestini_RyC-MR95 1 1
Acidaminococcus_fermentans_DSM_20731 1 1
Megamonas_hypermegale 1 1
Selenomonas_sputigena_ATCC_35185 1 1
Erysipelothrix_rhusiopathiae_str._Fujisawa 2 2
Faecalibacterium_prausnitzii 2 2
Ruminococcus_sp. 1 1
Ruminococcus_albus_7 2 2
Sulfobacillus_acidophilus_DSM_10332 1 1
Dehalobacter_sp._DCA 1 1
Dehalobacter_sp._CF 1 1
Acetobacterium_woodii_DSM_1030 1 1
Eubacterium_limosum_KIST612 2 2
Clostridium_difficile_630 1 1
Clostridium_saccharolyticum_WM1 1 1
[Ruminococcus]_obeum 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1 1
Clostridium_ljungdahlii_DSM_13528 2 2
Clostridium_kluyveri_DSM_555 1 1
Clostridium_beijerinckii_NCIMB_8052 1 1
Clostridium_tetani_E88 1 1
Clostridium_perfringens_ATCC_13124 2 2
Clostridium_botulinum_A_str._ATCC_3502 1 1
Clostridium_acetobutylicum_ATCC_824 1 1
Aerococcus_urinae_ACS-120-V-Col10a 1 1
Tetragenococcus_halophilus_NBRC_12172 4 4
Melissococcus_plutonius_DAT561 1 1
Enterococcus_sp._7L76 2 2
Enterococcus_faecalis_62 1 1
Oenococcus_oeni_PSU-1 2 2
Lactobacillus_casei_ATCC_334 2 2
Lactobacillus_kefiranofaciens_ZW3 4 4
Lactobacillus_crispatus_ST1 3 3
Lactobacillus_rhamnosus_Lc_705 2 2
Lactobacillus_johnsonii_FI9785 3 3
Lactobacillus_sanfranciscensis_TMW_1.1304 1 1
Lactobacillus_salivarius_CECT_5713 2 2
Lactobacillus_ruminis_ATCC_27782 2 2
Lactobacillus_fermentum_IFO_3956 1 1
Lactobacillus_amylovorus_GRL1118 3 3
Lactobacillus_sakei_subsp._sakei_23K 3 3
Lactobacillus_reuteri_DSM_20016 2 2
Lactobacillus_gasseri_ATCC_33323 4 4
Lactobacillus_plantarum_JDM1 3 3
Lactobacillus_helveticus_DPC_4571 3 3
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 4 4
Lactobacillus_buchneri_NRRL_B-30929 3 3
Lactobacillus_buchneri 4 4
Lactobacillus_brevis_ATCC_367 5 5
Lactobacillus_acidophilus_30SC 4 4
Pediococcus_claussenii_ATCC_BAA-344 3 3
Pediococcus_pentosaceus_ATCC_25745 2 2
Paenibacillus_sp._JDR-2 4 4
Paenibacillus_mucilaginosus_3016 2 2
Paenibacillus_polymyxa_M1 1 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 3 3
Listeria_innocua_Clip11262 3 3
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 3 3
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 3 3
Listeria_ivanovii_subsp._ivanovii_PAM_55 3 3
Lysinibacillus_sphaericus_C3-41 2 2
Oceanobacillus_iheyensis_HTE831 1 1
Bacillus_weihenstephanensis_KBAB4 1 1
Bacillus_thuringiensis_str._Al_Hakam 1 1
Bacillus_cereus_03BB102 1 1
Bacillus_anthracis_str._A0248 1 1
Bacillus_cellulosilyticus_DSM_2522 1 1
Bacillus_pumilus_SAFR-032 1 1
Chitinophaga_pinensis_DSM_2588 3 3
Flexibacter_litoralis_DSM_6794 1 1
Dyadobacter_fermentans_DSM_18053 1 1
Cytophaga_hutchinsonii_ATCC_33406 1 1
Spirosoma_linguale_DSM_74 1 1
Parabacteroides_distasonis_ATCC_8503 1 1
Odoribacter_splanchnicus_DSM_20712 1 1
Bacteroides_helcogenes_P_36-108 1 1
Bacteroides_thetaiotaomicron_VPI-5482 2 2
Bacteroides_fragilis_YCH46 2 2
Solitalea_canadensis_DSM_3403 1 1
Gramella_forsetii_KT0803 1 1
Zobellia_galactanivorans 1 1
Cellulophaga_algicola_DSM_14237 1 1
Capnocytophaga_ochracea_DSM_7271 1 1
Flavobacterium_indicum_GPTSA100-9 1 1
Flavobacterium_psychrophilum_JIP02/86 1 1
Flavobacterium_columnare_ATCC_49512 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 2 2
Waddlia_chondrophila_WSU_86-1044 4 4
Candidatus_Protochlamydia_amoebophila_UWE25 2 2
Parachlamydia_acanthamoebae_UV-7 5 5
Simkania_negevensis_Z 4 4
Isosphaera_pallida_ATCC_43644 8 8
Planctomyces_brasiliensis_DSM_5305 1 1
Planctomyces_limnophilus_DSM_3776 3 3
Rhodopirellula_baltica_SH_1 4 4
Pirellula_staleyi_DSM_6068 1 1
Coraliomargarita_akajimensis_DSM_45221 1 1
Fretibacterium_fastidiosum 1 1
Turneriella_parva_DSM_21527 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Brachyspira_murdochii_DSM_12563 1 1
Brachyspira_intermedia_PWS/A 1 1
Brachyspira_pilosicoli_95/1000 1 1
Brachyspira_hyodysenteriae_WA1 1 1
Spirochaeta_smaragdinae_DSM_11293 4 3
Sphaerochaeta_pleomorpha_str._Grapes 1 1
Sphaerochaeta_coccoides_DSM_17374 1 1
Treponema_primitia_ZAS-2 5 4
Spirochaeta_africana_DSM_8902 1 1
Denitrovibrio_acetiphilus_DSM_12809 1 1
Mesotoga_prima_MesG1.Ag.4.2 1 1
Persephonella_marina_EX-H1 1 1
Candidatus_Solibacter_usitatus_Ellin6076 2 2
Granulicella_mallensis_MP5ACTX8 1 1
Candidatus_Koribacter_versatilis_Ellin345 2 2
Acidobacterium_capsulatum_ATCC_51196 1 1
Thermodesulfovibrio_yellowstonii_DSM_11347 1 1
Candidatus_Nitrospira_defluvii 2 2
Streptobacillus_moniliformis_DSM_12112 1 1
Sebaldella_termitidis_ATCC_33386 2 2
Acidithiobacillus_ferrivorans_SS3 1 1
Acidithiobacillus_caldus_SM-1 1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 2 2
Bdellovibrio_bacteriovorus_HD100 2 2
Nitratifractor_salsuginis_DSM_16511 1 1
Sulfurospirillum_barnesii_SES-3 1 1
Arcobacter_sp._L 1 1
Arcobacter_nitrofigilis_DSM_7299 1 1
Campylobacter_curvus_525.92 1 1
Desulfobacca_acetoxidans_DSM_11109 1 1
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfotalea_psychrophila_LSv54 2 2
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfatibacillum_alkenivorans_AK-01 2 2
Desulfobacterium_autotrophicum_HRM2 1 1
Desulfococcus_oleovorans_Hxd3 3 3
Desulfohalobium_retbaense_DSM_5692 1 1
Desulfomicrobium_baculatum_DSM_4028 1 1
Desulfovibrio_piezophilus 1 1
Desulfovibrio_aespoeensis_Aspo-2 1 1
Desulfovibrio_magneticus_RS-1 3 3
Desulfovibrio_alaskensis_G20 1 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1 1
Desulfovibrio_salexigens_DSM_2638 1 1
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Hippea_maritima_DSM_10411 1 1
Geobacter_daltonii_FRC-32 1 1
Geobacter_uraniireducens_Rf4 1 1
Geobacter_lovleyi_SZ 1 1
Geobacter_metallireducens_GS-15 1 1
Pelobacter_carbinolicus_DSM_2380 2 2
Sorangium_cellulosum_'So_ce_56' 5 4
Anaeromyxobacter_sp._Fw109-5 2 2
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Stigmatella_aurantiaca_DW4/3-1 4 4
Corallococcus_coralloides_DSM_2259 3 3
Myxococcus_xanthus_DK_1622 3 3
Myxococcus_fulvus_HW-1 4 4
Dechloromonas_aromatica_RCB 1 1
Azoarcus_sp._KH32C 3 3
Azoarcus_sp._BH72 3 3
Laribacter_hongkongensis_HLHK9 1 1
Chromobacterium_violaceum_ATCC_12472 1 1
Neisseria_meningitidis_alpha14 1 1
Neisseria_meningitidis_FAM18 1 1
Neisseria_lactamica_020-06 1 1
Neisseria_gonorrhoeae_NCCP11945 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 2 2
beta_proteobacterium_CB 1 1
Methylibium_petroleiphilum_PM1 3 3
Thiomonas_arsenitoxydans 1 1
Thiomonas_intermedia_K12 1 1
Rubrivivax_gelatinosus_IL144 2 2
Leptothrix_cholodnii_SP-6 3 3
Burkholderia_phytofirmans_PsJN 1 1
Burkholderia_phymatum_STM815 2 2
Burkholderia_xenovorans_LB400 2 2
Ralstonia_eutropha_JMP134 3 3
Cupriavidus_taiwanensis_LMG_19424 3 3
Cupriavidus_metallidurans_CH34 2 2
Cupriavidus_necator_N-1 2 2
Ralstonia_eutropha_H16 2 2
Ralstonia_solanacearum_CFBP2957 2 2
Polynucleobacter_necessarius_subsp._asymbioticus_QLW-P1DMWA-1 2 2
Burkholderia_sp._CCGE1002 1 1
Burkholderia_thailandensis_E264 1 1
Burkholderia_pseudomallei_1106a 1 1
Burkholderia_ambifaria_AMMD 2 2
Burkholderia_cenocepacia_HI2424 2 2
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 4 4
Burkholderia_gladioli_BSR3 1 1
Alicycliphilus_denitrificans_K601 1 1
Ramlibacter_tataouinensis_TTB310 1 1
Delftia_sp._Cs1-4 2 2
Delftia_acidovorans_SPH-1 2 2
Polaromonas_naphthalenivorans_CJ2 2 2
Variovorax_paradoxus_S110 1 1
Acidovorax_ebreus_TPSY 1 1
Acidovorax_sp._KKS102 2 2
Acidovorax_sp._JS42 1 1
Acidovorax_citrulli_AAC00-1 2 2
Acidovorax_avenae_subsp._avenae_ATCC_19860 2 2
Comamonas_testosteroni_CNB-2 2 2
Herbaspirillum_seropedicae_SmR1 2 2
Bordetella_petrii_DSM_12804 1 1
Bordetella_avium_197N 2 2
Nitrosomonas_sp._Is79A3 1 1
Nitrosomonas_eutropha_C91 1 1
Nitrosomonas_europaea_ATCC_19718 1 1
Methylotenera_versatilis_301 1 1
Methylotenera_mobilis_JLW8 1 1
Methylobacillus_flagellatus_KT 1 1
Parvularcula_bermudensis_HTCC2503 4 4
Asticcacaulis_excentricus_CB_48 1 1
Brevundimonas_subvibrioides_ATCC_15264 3 3
Caulobacter_sp._K31 5 5
Caulobacter_crescentus_NA1000 3 3
Caulobacter_segnis_ATCC_21756 4 4
Phenylobacterium_zucineum_HLK1 4 4
Erythrobacter_litoralis_HTCC2594 3 3
Sphingopyxis_alaskensis_RB2256 1 1
Novosphingobium_sp._PP1Y 4 4
Novosphingobium_aromaticivorans_DSM_12444 5 5
Sphingobium_sp._SYK-6 2 2
Sphingobium_japonicum_UT26S 2 2
Sphingobium_chlorophenolicum_L-1 2 2
Sphingomonas_sp._MM-1 4 4
Sphingomonas_wittichii_RW1 5 5
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 1 1
Maricaulis_maris_MCS10 3 3
Hirschia_baltica_ATCC_49814 3 3
Hyphomonas_neptunium_ATCC_15444 3 3
Dinoroseobacter_shibae_DFL_12 1 1
Phaeobacter_gallaeciensis_2.10 1 1
Pseudovibrio_sp._FO-BEG1 4 4
Jannaschia_sp._CCS1 3 3
Ruegeria_sp._TM1040 2 2
Ruegeria_pomeroyi_DSS-3 1 1
Ketogulonicigenium_vulgare_Y25 2 2
Ketogulonigenium_vulgarum_WSH-001 2 2
Roseobacter_denitrificans_OCh_114 1 1
Rhodobacter_sphaeroides_ATCC_17029 1 1
Rhodobacter_capsulatus_SB_1003 2 2
Paracoccus_denitrificans_PD1222 3 3
Magnetospirillum_magneticum_AMB-1 1 1
Rhodospirillum_centenum_SW 2 2
Azospirillum_lipoferum_4B 2 2
Azospirillum_sp._B510 4 4
Azospirillum_brasilense_Sp245 2 2
Gluconacetobacter_xylinus_NBRC_3288 1 1
Granulibacter_bethesdensis_CGDNIH1 2 2
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Acidiphilium_multivorum_AIU301 2 2
Acidiphilium_cryptum_JF-5 2 2
Gluconobacter_oxydans_621H 1 1
Acetobacter_pasteurianus_IFO_3283-01 3 3
Polymorphum_gilvum_SL003B-26A1 3 3
Candidatus_Puniceispirillum_marinum_IMCC1322 3 3
alpha_proteobacterium_HIMB59 1 1
Starkeya_novella_DSM_506 3 3
Xanthobacter_autotrophicus_Py2 1 1
Azorhizobium_caulinodans_ORS_571 1 1
Methylobacterium_chloromethanicum_CM4 4 4
Methylobacterium_extorquens_AM1 4 4
Methylobacterium_sp._4-46 4 4
Methylobacterium_populi_BJ001 4 4
Methylobacterium_nodulans_ORS_2060 3 3
Methylobacterium_radiotolerans_JCM_2831 3 3
Parvibaculum_lavamentivorans_DS-1 1 1
Ochrobactrum_anthropi_ATCC_49188 6 6
Brucella_microti_CCM_4915 2 2
Brucella_pinnipedialis_B2/94 2 2
Brucella_canis_ATCC_23365 2 2
Brucella_suis_ATCC_23445 2 2
Brucella_melitensis_ATCC_23457 2 2
Brucella_ovis_ATCC_25840 2 2
Brucella_abortus_S19 2 2
Sinorhizobium_fredii_NGR234 3 3
Sinorhizobium_medicae_WSM419 6 6
Sinorhizobium_meliloti_AK83 5 5
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 7 7
Rhizobium_etli_CIAT_652 3 3
Rhizobium_leguminosarum_bv._viciae_3841 3 3
Agrobacterium_tumefaciens_str._C58 5 5
Agrobacterium_radiobacter_K84 3 3
Agrobacterium_sp._H13-3 7 7
Agrobacterium_vitis_S4 4 4
Candidatus_Liberibacter_asiaticus_str._psy62 1 1
Mesorhizobium_sp._BNC1 1 1
Mesorhizobium_opportunistum_WSM2075 2 2
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 3 3
Mesorhizobium_loti_MAFF303099 2 2
Methylocella_silvestris_BL2 1 1
Beijerinckia_indica_subsp._indica_ATCC_9039 1 1
Pelagibacterium_halotolerans_B2 3 3
Rhodomicrobium_vannielii_ATCC_17100 4 4
Hyphomicrobium_sp._MC1 2 2
Hyphomicrobium_denitrificans_ATCC_51888 3 3
Oligotropha_carboxidovorans_OM4 2 2
Rhodopseudomonas_palustris_BisA53 3 3
Nitrobacter_hamburgensis_X14 1 1
Bradyrhizobium_japonicum_USDA_110 2 2
Bradyrhizobium_sp._ORS_278 3 3
Methylocystis_sp._SC2 2 2
Bartonella_tribocorum_CIP_105476 1 1
Bartonella_henselae_str._Houston-1 1 1
Bartonella_grahamii_as4aup 1 1
Bartonella_quintana_str._Toulouse 1 1
Bartonella_bacilliformis_KC583 1 1
Saccharophagus_degradans_2-40 1 1
Teredinibacter_turnerae_T7901 1 1
Aggregatibacter_aphrophilus_NJ8700 2 2
Haemophilus_parainfluenzae_T3T1 1 1
Oceanimonas_sp._GK1 2 2
Tolumonas_auensis_DSM_9187 1 1
Aeromonas_veronii_B565 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 3 3
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Aliivibrio_salmonicida_LFI1238 1 1
Vibrio_fischeri_MJ11 1 1
Vibrio_sp._Ex25 2 2
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_parahaemolyticus_RIMD_2210633 2 2
Vibrio_splendidus_LGP32 1 1
Vibrio_anguillarum_775 1 1
Vibrio_furnissii_NCTC_11218 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 1 1
Photobacterium_profundum_SS9 2 2
Psychromonas_ingrahamii_37 1 1
Idiomarina_loihiensis_L2TR 1 1
Ferrimonas_balearica_DSM_9799 4 4
Shewanella_piezotolerans_WP3 2 2
Shewanella_loihica_PV-4 1 1
Shewanella_halifaxensis_HAW-EB4 3 3
Shewanella_sediminis_HAW-EB3 2 2
Shewanella_denitrificans_OS217 2 2
Shewanella_pealeana_ATCC_700345 2 2
Shewanella_oneidensis_MR-1 2 2
Shewanella_baltica_OS185 2 2
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_sp._MR-4 2 2
Shewanella_amazonensis_SB2B 1 1
Shewanella_violacea_DSS12 1 1
Shewanella_frigidimarina_NCIMB_400 3 3
Shewanella_putrefaciens_CN-32 4 4
Colwellia_psychrerythraea_34H 1 1
Pseudoalteromonas_sp._SM9913 2 2
Pseudoalteromonas_atlantica_T6c 1 1
Pseudoalteromonas_haloplanktis_TAC125 2 2
Glaciecola_sp._4H-3-7+YE-5 2 2
Glaciecola_nitratireducens_FR1064 1 1
Marinobacter_adhaerens_HP15 1 1
Marinobacter_sp._BSs20148 2 2
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1
Marinobacter_aquaeolei_VT8 2 2
Alteromonas_sp._SN2 3 3
Alteromonas_macleodii_str._'Deep_ecotype' 3 3
Hahella_chejuensis_KCTC_2396 5 5
Alcanivorax_borkumensis_SK2 2 2
Marinomonas_posidonica_IVIA-Po-181 4 4
Marinomonas_sp._MWYL1 4 4
Marinomonas_mediterranea_MMB-1 2 2
Methylomonas_methanica_MC09 1 1
Rhodanobacter_denitrificans 2 2
Pseudoxanthomonas_spadix_BD-a59 1 1
Pseudoxanthomonas_suwonensis_11-1 1 1
Stenotrophomonas_maltophilia_K279a 3 3
Xylella_fastidiosa_M23 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_campestris_pv._campestris_str._B100 3 3
Thioalkalivibrio_sulfidophilus_HL-EbGr7 3 3
Thioalkalivibrio_sp._K90mix 1 1
Halorhodospira_halophila_SL1 1 1
Allochromatium_vinosum_DSM_180 2 2
Nitrosococcus_watsonii_C-113 1 1
Nitrosococcus_halophilus_Nc4 1 1
Nitrosococcus_oceani_ATCC_19707 1 1
Legionella_longbeachae_NSW150 3 3
Legionella_pneumophila_str._Corby 1 1
gamma_proteobacterium_HdN1 1 1
Photorhabdus_asymbiotica 2 2
Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1
Xenorhabdus_bovienii_SS-2004 2 2
Xenorhabdus_nematophila_ATCC_19061 1 1
Providencia_stuartii_MRSN_2154 2 2
Proteus_mirabilis_HI4320 2 2
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Yersinia_pseudotuberculosis_IP_31758 3 3
Yersinia_pestis_Pestoides_F 5 5
Yersinia_enterocolitica_subsp._enterocolitica_8081 3 3
Serratia_sp._AS12 1 1
Serratia_sp._ATCC_39006 2 2
Serratia_plymuthica_AS9 1 1
Serratia_proteamaculans_568 1 1
Dickeya_dadantii_Ech703 2 2
Dickeya_zeae_Ech1591 1 1
Pectobacterium_wasabiae_WPP163 2 2
Pectobacterium_sp._SCC3193 2 2
Pectobacterium_atrosepticum_SCRI1043 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1
Pantoea_ananatis_LMG_20103 1 1
Erwinia_tasmaniensis_Et1/99 1 1
Erwinia_sp._Ejp617 1 1
Erwinia_pyrifoliae_Ep1/96 1 1
Erwinia_amylovora_ATCC_49946 1 1
Cronobacter_turicensis_z3032 1 1
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 1 1
Shigella_sonnei_Ss046 1 1
Shigella_dysenteriae_Sd197 1 1
Shigella_boydii_CDC_3083-94 1 1
Salmonella_bongori_NCTC_12419 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1 1
Klebsiella_oxytoca_E718 2 2
Klebsiella_variicola_At-22 1 1
Klebsiella_pneumoniae_NTUH-K2044 1 1
Enterobacter_aerogenes_KCTC_2190 1 1
Escherichia_fergusonii_ATCC_35469 1 1
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1 1
Enterobacter_asburiae_LF7a 1 1
Citrobacter_rodentium_ICC168 2 2
Pseudomonas_sp._TKP 3 3
Pseudomonas_sp._UW4 3 3
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 3 3
Pseudomonas_entomophila_L48 2 2
Pseudomonas_syringae_pv._tomato_str._DC3000 2 2
Pseudomonas_stutzeri_A1501 3 3
Pseudomonas_fulva_12-X 2 2
Pseudomonas_protegens_Pf-5 2 2
Pseudomonas_fluorescens_SBW25 2 2
Pseudomonas_mendocina_ymp 3 3
Pseudomonas_aeruginosa_UCBPP-PA14 2 2
Pseudomonas_sp._VLB120 1 1
Psychrobacter_sp._G 2 2
Psychrobacter_sp._PRwf-1 2 2
Psychrobacter_arcticus_273-4 2 2
Psychrobacter_cryohalolentis_K5 2 2
Moraxella_catarrhalis_RH4 1 1
Acinetobacter_oleivorans_DR1 3 3
Acinetobacter_calcoaceticus_PHEA-2 3 3
Acinetobacter_baumannii_ATCC_17978 2 2
Acinetobacter_sp._ADP1 3 3
Thiomicrospira_crunogena_XCL-2 2 2
Thioalkalimicrobium_cyclicum_ALM1 1 1
Candidatus_Caldiarchaeum_subterraneum 1 1
Cenarchaeum_symbiosum_A 1 1
Candidatus_Nitrosopumilus_sp._AR2 1 1
Nitrosopumilus_maritimus_SCM1 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 2 2
Acidilobus_saccharovorans_345-15 1 1
Pyrolobus_fumarii_1A 3 3
Hyperthermus_butylicus_DSM_5456 1 1
Thermogladius_cellulolyticus_1633 1 1
Ignicoccus_hospitalis_KIN4/I 2 2
Thermosphaera_aggregans_DSM_11486 1 1
Staphylothermus_hellenicus_DSM_12710 1 1
Staphylothermus_marinus_F1 1 1
Desulfurococcus_fermentans_DSM_16532 1 1
Desulfurococcus_kamchatkensis_1221n 1 1
Desulfurococcus_mucosus_DSM_2162 1 1
Metallosphaera_cuprina_Ar-4 1 1
Metallosphaera_sedula_DSM_5348 1 1
Acidianus_hospitalis_W1 1 1
Sulfolobus_tokodaii_str._7 1 1
Sulfolobus_islandicus_Y.N.15.51 1 1
Sulfolobus_solfataricus_P2 1 1
Sulfolobus_acidocaldarius_DSM_639 1 1
Thermofilum_sp._1910b 1 1
Thermofilum_pendens_Hrk_5 1 1
Vulcanisaeta_moutnovskia_768-28 1 1
Vulcanisaeta_distributa_DSM_14429 1 1
Caldivirga_maquilingensis_IC-167 1 1
Pyrobaculum_sp._1860 1 1
Pyrobaculum_calidifontis_JCM_11548 1 1
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_oguniense_TE7 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
Pyrobaculum_aerophilum_str._IM2 1 1
Pyrobaculum_islandicum_DSM_4184 1 1
Thermoproteus_uzoniensis_768-20 1 1
Thermoproteus_tenax_Kra_1 1 1
Methanocella_paludicola_SANAE 1 1
Methanosarcina_acetivorans_C2A 2 2
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanospirillum_hungatei_JF-1 1 1
Methanoculleus_bourgensis_MS2 1 1
Methanoculleus_marisnigri_JR1 1 1
Thermococcus_sp._4557 1 1
Thermococcus_onnurineus_NA1 1 1
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_sibiricus_MM_739 1 1
Thermococcus_barophilus_MP 1 1
Pyrococcus_sp._ST04 1 1
Pyrococcus_yayanosii_CH1 1 1
Pyrococcus_horikoshii_OT3 1 1
Pyrococcus_abyssi_GE5 1 1
Pyrococcus_furiosus_COM1 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Halomicrobium_mukohataei_DSM_12286 1 1
Halorhabdus_utahensis_DSM_12940 1 1
Haloarcula_hispanica_ATCC_33960 2 2
Haloarcula_marismortui_ATCC_43049 1 1
Methanotorris_igneus_Kol_5 1 1
Methanocaldococcus_sp._FS406-22 1 1
Methanocaldococcus_jannaschii_DSM_2661 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   190 171
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   115 102
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   55 48
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   111 106
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   174 151
Cryptococcus_neoformans_var._grubii_H99_ 21 17
Cryptococcus_neoformans_B-3501A_ 21 17
Cryptococcus_neoformans_JEC21_ 17 14
Paracoccidioides_brasiliensis_Pb01_ 15 13
Paracoccidioides_brasiliensis_Pb03_ 16 14
Coccidioides_posadasii_str._Silveira_ 16 14
Coccidioides_immitis_RMSCC_3703_ 13 12
Coccidioides_immitis_RMSCC_2394_ 16 14
Coccidioides_immitis_H538.4_ 14 12
Ajellomyces_dermatitidis_ER-3_ 15 13
Histoplasma_capsulatum_H143 16 14
Histoplasma_capsulatum_H88 15 14
Histoplasma_capsulatum_G186AR 16 14
Aspergillus_fumigatus_A1163_ 13 11
Candida_albicans_WO-1_ 19 18
Saccharomyces_cerevisiae_UC5 16 15
Saccharomyces_cerevisiae_PW5 15 14
Saccharomyces_cerevisiae_FL100 10 9
Saccharomyces_cerevisiae_CLIB324 11 10
Saccharomyces_cerevisiae_CBS7960 12 11
Saccharomyces_cerevisiae_YJM269 16 15
Saccharomyces_cerevisiae_T7 16 15
Saccharomyces_cerevisiae_FostersB 16 15
Saccharomyces_cerevisiae_FostersO 14 14
Saccharomyces_cerevisiae_VL3 16 15
Saccharomyces_cerevisiae_Vin13 14 13
Saccharomyces_cerevisiae_LalvinQA23 15 13
Saccharomyces_cerevisiae_AWRI796 14 13
Saccharomyces_cerevisiae_Sigma1278b 16 15
Saccharomyces_cerevisiae_W303 16 15
Saccharomyces_cerevisiae_JAY291 16 15
Saccharomyces_cerevisiae_AWRI1631 11 10
Saccharomyces_cerevisiae_YPS163 12 11
Saccharomyces_cerevisiae_M22 7 7
Saccharomyces_cerevisiae_T73 4 4
Saccharomyces_cerevisiae_CLIB215 13 11
Saccharomyces_cerevisiae_Y10 8 8
Saccharomyces_cerevisiae_YJM789_ 16 15
Saccharomyces_cerevisiae_YJM789 16 15
Saccharomyces_cerevisiae_RM11-1a 16 15
Saccharomyces_cerevisiae_RM11-1a_ 16 15
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   16 15
Schizosaccharomyces_pombe_972h-_ 10 9
Batrachochytrium_dendrobatidis_JEL423_ 22 19
Batrachochytrium_dendrobatidis_JAM81_ 23 20
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   32 30
Hordeum_vulgare_22   (Domesticated barley)   68 68
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   36 34
Trypanosoma_brucei_Lister_427_v4.1 29 25
Neospora_caninum_Nc-Liverpool_6.2 11 10
Plasmodium_falciparum_HB3_ 3 3
Plasmodium_falciparum_Dd2_ 1 1
Chroococcidiopsis_thermalis_PCC_7203 4 4
Chamaesiphon_minutus_PCC_6605 5 5
Cyanobium_gracile_PCC_6307 1 1
Dactylococcopsis_salina_PCC_8305 2 2
Synechococcus_sp._PCC_7002 1 1
Synechococcus_elongatus_PCC_6301 2 2
Crinalium_epipsammum_PCC_9333 2 2
Oscillatoria_nigro-viridis_PCC_7112 3 3
Oscillatoria_acuminata_PCC_6304 3 3
Cyanothece_sp._PCC_7822 2 2
Cyanothece_sp._PCC_7425 4 4
Cyanothece_sp._PCC_7424 2 2
Cyanothece_sp._ATCC_51142 1 1
Cyanobacterium_aponinum_PCC_10605 1 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 3 3
Calothrix_parietina_Calothrix_sp._PCC_6303 2 2
Cylindrospermum_stagnale_PCC_7417 5 5
Anabaena_cylindrica_PCC_7122 1 1
Mesoplasma_florum_W37 1 1
Spiroplasma_syrphidicola_EA-1 1 1
Spiroplasma_diminutum_CUAS-1 1 1
Spiroplasma_chrysopicola_DF-1 1 1
Spiroplasma_taiwanense_CT-1 1 1
Spiroplasma_apis_B31 2 2
Mycoplasma_leachii_PG50 1 1
Mycoplasma_putrefaciens_Mput9231 1 1
Adlercreutzia_equolifaciens_DSM_19450 2 2
Frankia_sp._EuI1c 6 5
Frankia_sp._CcI3 3 3
Nocardiopsis_alba_ATCC_BAA-2165 4 4
Streptomyces_albus_J1074 3 3
Streptomyces_rapamycinicus_NRRL_5491 2 2
Streptomyces_davawensis_JCM_4913 5 5
Streptomyces_fulvissimus_DSM_40593 3 3
Streptomyces_venezuelae_ATCC_10712 5 5
Streptomyces_collinus_Tu_365 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 3 3
Saccharothrix_espanaensis_DSM_44229 1 1
Amycolatopsis_mediterranei_RB 3 3
Amycolatopsis_mediterranei_S699 3 3
Amycolatopsis_mediterranei_S699 3 3
Amycolatopsis_orientalis_HCCB10007 4 4
Propionibacterium_acidipropionici_ATCC_4875 2 2
Actinoplanes_friuliensis_DSM_7358 3 3
Rhodococcus_pyridinivorans_SB3094 2 2
Rhodococcus_erythropolis_CCM2595 9 9
Nocardia_brasiliensis_ATCC_700358 5 5
Mycobacterium_sp._MOTT36Y 1 1
Mycobacterium_sp._JDM601 1 1
Mycobacterium_abscessus_subsp._bolletii_50594 1 1
Mycobacterium_liflandii_128FXT 1 1
Mycobacterium_sp._KMS 2 2
Mycobacterium_sp._MCS 2 2
Mycobacterium_yongonense_05-1390 1 1
Mycobacterium_intracellulare_MOTT-64 2 2
Mycobacterium_indicus_pranii_MTCC_9506 1 1
Mycobacterium_intracellulare_MOTT-02 1 1
Mycobacterium_avium_subsp._paratuberculosis_K-10 2 2
Mycobacterium_canettii_CIPT_140070017 1 1
Mycobacterium_canettii_CIPT_140060008 1 1
Mycobacterium_canettii_CIPT_140070008 1 1
Mycobacterium_canettii_CIPT_140070010 1 1
Mycobacterium_tuberculosis_EAI5/NITR206 1 1
Mycobacterium_tuberculosis_EAI5 1 1
Mycobacterium_tuberculosis_CAS/NITR204 1 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1 1
Mycobacterium_tuberculosis_UT205 1 1
Mycobacterium_tuberculosis_RGTB327 1 1
Mycobacterium_tuberculosis_CTRI-2 1 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1 1
Mycobacterium_tuberculosis_KZN_605 1 1
Mycobacterium_tuberculosis_KZN_4207 1 1
Mycobacterium_tuberculosis_CCDC5180 1 1
Mycobacterium_tuberculosis_CCDC5079 1 1
Mycobacterium_tuberculosis_CCDC5079 1 1
Mycobacterium_tuberculosis_H37Ra 1 1
Mycobacterium_tuberculosis_str._Haarlem/NITR202 2 2
Mycobacterium_tuberculosis_str._Haarlem 1 1
Mycobacterium_tuberculosis_F11 1 1
Mycobacterium_tuberculosis_H37Rv 1 1
Mycobacterium_tuberculosis_CDC1551 1 1
Mycobacterium_bovis_AF2122/97 1 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1 1
Mycobacterium_bovis_BCG_str._Mexico 1 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1 1
Mycobacterium_gilvum_Spyr1 1 1
Mycobacterium_smegmatis_str._MC2_155 2 2
Mycobacterium_kansasii_ATCC_12478 2 2
Corynebacterium_terpenotabidum_Y-11 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 1 1
Clavibacter_michiganensis_subsp._sepedonicus 2 2
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 2 2
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 1 1
Bifidobacterium_animalis_subsp._lactis_Bl12 1 1
Bifidobacterium_animalis_subsp._lactis_B420 1 1
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 1 1
Bifidobacterium_animalis_subsp._lactis_BLC1 1 1
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 1 1
Bifidobacterium_animalis_subsp._lactis_Bi-07 1 1
Bifidobacterium_animalis_subsp._lactis_V9 1 1
Bifidobacterium_animalis_subsp._lactis_DSM_10140 1 1
Bifidobacterium_animalis_subsp._lactis_BB-12 1 1
Bifidobacterium_animalis_subsp._lactis_AD011 1 1
Bifidobacterium_asteroides_PRL2011 1 1
Chthonomonas_calidirosea_T49 2 2
Erysipelothrix_rhusiopathiae_SY1027 3 3
Faecalibacterium_prausnitzii_L2-6 1 1
Ruminococcus_champanellensis_18P13 1 1
Sulfobacillus_acidophilus_TPY 1 1
Clostridium_difficile_BI1 1 1
Clostridium_difficile_R20291 1 1
Clostridium_difficile_CD196 1 1
Clostridium_saccharobutylicum_DSM_13864 2 2
Clostridium_autoethanogenum_DSM_10061 2 2
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 2 2
Clostridium_kluyveri_NBRC_12016 1 1
Clostridium_perfringens_SM101 1 1
Clostridium_perfringens_str._13 2 2
Clostridium_pasteurianum_BC1 2 2
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_BKT015925 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_E3_str._Alaska_E43 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Clostridium_acetobutylicum_DSM_1731 1 1
Clostridium_acetobutylicum_EA_2018 1 1
Thermacetogenium_phaeum_DSM_12270 1 1
Carnobacterium_maltaromaticum_LMA28 1 1
Melissococcus_plutonius_ATCC_35311 1 1
Enterococcus_mundtii_QU_25 1 1
Enterococcus_casseliflavus_EC20 3 3
Enterococcus_faecalis_str._Symbioflor_1 1 1
Enterococcus_faecalis_D32 1 1
Enterococcus_faecalis_OG1RF 1 1
Enterococcus_faecalis_V583 1 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 3 3
Lactobacillus_casei_LOCK919 2 2
Lactobacillus_casei_W56 2 2
Lactobacillus_casei_LC2W 2 2
Lactobacillus_casei_BD-II 2 2
Lactobacillus_casei_BL23 2 2
Lactobacillus_casei_str._Zhang 2 2
Lactobacillus_rhamnosus_LOCK908 2 2
Lactobacillus_rhamnosus_LOCK900 2 2
Lactobacillus_rhamnosus_ATCC_8530 2 2
Lactobacillus_rhamnosus_GG 2 2
Lactobacillus_rhamnosus_GG 2 2
Lactobacillus_johnsonii_N6.2 4 4
Lactobacillus_johnsonii_DPC_6026 4 4
Lactobacillus_johnsonii_NCC_533 4 4
Lactobacillus_salivarius_UCC118 2 2
Lactobacillus_fermentum_F-6 1 1
Lactobacillus_fermentum_CECT_5716 1 1
Lactobacillus_amylovorus_GRL_1112 3 3
Lactobacillus_reuteri_TD1 1 1
Lactobacillus_reuteri_I5007 1 1
Lactobacillus_reuteri_JCM_1112 2 2
Lactobacillus_reuteri_SD2112 2 2
Lactobacillus_plantarum_16 3 3
Lactobacillus_plantarum_ZJ316 3 3
Lactobacillus_plantarum_subsp._plantarum_ST-III 3 3
Lactobacillus_plantarum_subsp._plantarum_P-8 3 3
Lactobacillus_plantarum_WCFS1 3 3
Lactobacillus_helveticus_R0052 3 3
Lactobacillus_helveticus_H10 4 4
Lactobacillus_helveticus_CNRZ32 3 3
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 4 4
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 4 4
Lactobacillus_delbrueckii_subsp._bulgaricus_2038 4 4
Lactobacillus_brevis_KB290 4 4
Lactobacillus_acidophilus_La-14 3 3
Lactobacillus_acidophilus_NCFM 3 3
Pediococcus_pentosaceus_SL4 2 2
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 1 1
Lactococcus_lactis_subsp._lactis_IO-1 1 1
Lactococcus_lactis_subsp._lactis_CV56 1 1
Lactococcus_lactis_subsp._lactis_KF147 1 1
Lactococcus_lactis_subsp._lactis_Il1403 1 1
Streptococcus_pneumoniae_INV200 1 1
Streptococcus_pneumoniae_CGSP14 1 1
Streptococcus_pneumoniae_70585 3 3
Streptococcus_suis_D9 1 1
Paenibacillus_sp._Y412MC10 1 1
Paenibacillus_mucilaginosus_KNP414 2 2
Paenibacillus_mucilaginosus_K02 2 2
Listeria_monocytogenes_EGD_sequence 3 3
Listeria_monocytogenes_N53-1 3 3
Listeria_monocytogenes_La111 3 3
Listeria_monocytogenes_serotype_4b_str._LL195 2 2
Listeria_monocytogenes_07PF0776 3 3
Listeria_monocytogenes_M7 3 3
Listeria_monocytogenes_J1-220 3 3
Listeria_monocytogenes_J1816 3 3
Listeria_monocytogenes_SLCC2376 3 3
Listeria_monocytogenes_SLCC5850 3 3
Listeria_monocytogenes_ATCC_19117 3 3
Listeria_monocytogenes_L312 3 3
Listeria_monocytogenes_SLCC2479 3 3
Listeria_monocytogenes_SLCC7179 4 4
Listeria_monocytogenes_SLCC2540 3 3
Listeria_monocytogenes_SLCC2378 3 3
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 3 3
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 3 3
Listeria_monocytogenes_serotype_7_str._SLCC2482 3 3
Listeria_monocytogenes_08-5578 3 3
Listeria_monocytogenes_08-5923 3 3
Listeria_monocytogenes_L99 3 3
Listeria_monocytogenes_HCC23 3 3
Listeria_monocytogenes_10403S 3 3
Listeria_monocytogenes_J0161 3 3
Listeria_monocytogenes_Finland_1998 3 3
Listeria_monocytogenes_FSL_R2-561 3 3
Listeria_monocytogenes_serotype_4b_str._F2365 3 3
Listeria_monocytogenes_EGD-e 3 3
Bacillus_infantis_NRRL_B-14911 1 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1 1
Bacillus_toyonensis_BCT-7112 1 1
Bacillus_thuringiensis_HD-771 1 1
Bacillus_thuringiensis_HD-789 1 1
Bacillus_thuringiensis_MC28 1 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1 1
Bacillus_thuringiensis_YBT-1518 1 1
Bacillus_thuringiensis_Bt407 4 4
Bacillus_thuringiensis_serovar_konkukian_str._97-27 2 2
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1 1
Bacillus_thuringiensis_BMB171 2 2
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1 1
Bacillus_cereus_FRI-35 1 1
Bacillus_cereus_biovar_anthracis_str._CI 1 1
Bacillus_cereus_AH820 2 2
Bacillus_cereus_AH187 1 1
Bacillus_cereus_B4264 1 1
Bacillus_cereus_G9842 1 1
Bacillus_cereus_Q1 1 1
Bacillus_cereus_F837/76 2 2
Bacillus_cereus_NC7401 1 1
Bacillus_cereus_E33L 1 1
Bacillus_cereus_ATCC_14579 1 1
Bacillus_cereus_ATCC_10987 2 2
Bacillus_anthracis_str._H9401 1 1
Bacillus_anthracis_str._CDC_684 1 1
Bacillus_anthracis_str._'Ames_Ancestor' 1 1
Bacillus_anthracis_str._Sterne 1 1
Bacillus_anthracis_str._Ames 1 1
Echinicola_vietnamensis_DSM_17526 1 1
Bacteroides_xylanisolvens_XB1A 2 2
Bacteroides_fragilis_638R 2 2
Bacteroides_fragilis_NCTC_9343 2 2
Psychroflexus_torquis_ATCC_700755 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 2 2
Singulisphaera_acidiphila_DSM_18658 10 10
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Brachyspira_pilosicoli_WesB 1 1
Brachyspira_pilosicoli_B2904 1 1
Brachyspira_pilosicoli_P43/6/78 1 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1 1
Bdellovibrio_exovorus_JSS 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 4 4
Desulfocapsa_sulfexigens_DSM_10523 2 2
Desulfobacula_toluolica_Tol2 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Desulfovibrio_vulgaris_RCH1 1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1 1
Desulfovibrio_vulgaris_str._Hildenborough 1 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 2 2
Desulfovibrio_desulfuricans_ND132 1 1
Sorangium_cellulosum_So0157-2 5 4
Anaeromyxobacter_sp._K 2 2
Anaeromyxobacter_dehalogenans_2CP-C 1 1
Myxococcus_stipitatus_DSM_14675 3 3
Neisseria_meningitidis_WUE_2594 1 1
Neisseria_meningitidis_G2136 1 1
Neisseria_meningitidis_M04-240196 1 1
Neisseria_meningitidis_M01-240149 1 1
Neisseria_meningitidis_NZ-05/33 1 1
Neisseria_meningitidis_M01-240355 1 1
Neisseria_meningitidis_8013 1 1
Neisseria_meningitidis_053442 1 1
Neisseria_meningitidis_Z2491 1 1
Neisseria_meningitidis_H44/76 1 1
Neisseria_meningitidis_alpha710 1 1
Neisseria_meningitidis_MC58 1 1
Neisseria_gonorrhoeae_TCDC-NG08107 1 1
Neisseria_gonorrhoeae_FA_1090 1 1
Burkholderia_phenoliruptrix_BR3459a 1 1
Pandoraea_pnomenusa_3kgm 1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_Po82 1 1
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 1 1
Polynucleobacter_necessarius_subsp._necessarius_STIR1 1 1
Burkholderia_sp._YI23 2 2
Burkholderia_sp._CCGE1003 1 1
Burkholderia_sp._CCGE1001 1 1
Burkholderia_sp._KJ006 2 2
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_pseudomallei_BPC006 1 1
Burkholderia_pseudomallei_1026b 1 1
Burkholderia_pseudomallei_MSHR346 1 1
Burkholderia_pseudomallei_668 2 2
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_lata 4 4
Burkholderia_ambifaria_MC40-6 2 2
Burkholderia_cenocepacia_MC0-3 2 2
Burkholderia_cenocepacia_AU_1054 2 2
Burkholderia_cenocepacia_J2315 3 3
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_cepacia_GG4 3 3
Alicycliphilus_denitrificans_BC 1 1
Variovorax_paradoxus_B4 2 2
Variovorax_paradoxus_EPS 3 3
Nitrosomonas_sp._AL212 1 1
Caulobacter_crescentus_CB15 3 3
Zymomonas_mobilis_subsp._mobilis_ATCC_29191 1 1
Zymomonas_mobilis_subsp._mobilis_CP4 1 1
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 1 1
Zymomonas_mobilis_subsp._mobilis_ZM4 1 1
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 1 1
Phaeobacter_gallaeciensis_DSM_17395 1 1
Phaeobacter_gallaeciensis_DSM_26640 1 1
Leisingera_methylohalidivorans_DSM_14336 3 3
Octadecabacter_antarcticus_307 3 3
Octadecabacter_arcticus_238 4 4
Rhodobacter_sphaeroides_KD131 2 2
Rhodobacter_sphaeroides_ATCC_17025 2 2
Rhodobacter_sphaeroides_2.4.1 1 1
Paracoccus_aminophilus_JCM_7686 2 2
Candidatus_Endolissoclinum_faulkneri_L2 1 1
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Gluconobacter_oxydans_H24 2 2
Acetobacter_pasteurianus_386B 2 2
Acetobacter_pasteurianus_IFO_3283-12 3 3
Acetobacter_pasteurianus_IFO_3283-01-42C 3 3
Acetobacter_pasteurianus_IFO_3283-32 3 3
Acetobacter_pasteurianus_IFO_3283-26 3 3
Acetobacter_pasteurianus_IFO_3283-22 3 3
Acetobacter_pasteurianus_IFO_3283-07 3 3
Acetobacter_pasteurianus_IFO_3283-03 3 3
Methylobacterium_extorquens_DM4 5 5
Methylobacterium_extorquens_PA1 6 6
Brucella_ceti_TE10759-12 1 1
Brucella_ceti_TE28753-12 1 1
Brucella_canis_HSK_A52141 2 2
Brucella_suis_VBI22 2 2
Brucella_suis_1330 2 2
Brucella_suis_1330 2 2
Brucella_melitensis_NI 2 2
Brucella_melitensis_M5-90 2 2
Brucella_melitensis_M28 2 2
Brucella_melitensis_bv._1_str._16M 2 2
Brucella_abortus_A13334 2 2
Brucella_melitensis_biovar_Abortus_2308 2 2
Brucella_abortus_bv._1_str._9-941 2 2
Sinorhizobium_fredii_USDA_257 6 6
Sinorhizobium_fredii_HH103 3 3
Sinorhizobium_meliloti_2011 5 5
Sinorhizobium_meliloti_GR4 5 5
Sinorhizobium_meliloti_Rm41 6 6
Sinorhizobium_meliloti_SM11 4 4
Sinorhizobium_meliloti_BL225C 5 5
Sinorhizobium_meliloti_1021 5 5
Rhizobium_etli_CFN_42 4 4
Rhizobium_etli_bv._mimosae_str._Mim1 4 4
Rhizobium_tropici_CIAT_899 5 5
Rhizobium_leguminosarum_bv._trifolii_WSM2304 3 3
Rhizobium_leguminosarum_bv._trifolii_WSM1325 3 3
Liberibacter_crescens_BT-1 2 2
Candidatus_Liberibacter_solanacearum_CLso-ZC1 1 1
Candidatus_Liberibacter_americanus_str._Sao_Paulo 1 1
Candidatus_Liberibacter_asiaticus_str._gxpsy 1 1
Mesorhizobium_australicum_WSM2073 2 2
Hyphomicrobium_nitrativorans_NL23 1 1
Hyphomicrobium_denitrificans_1NES1 2 2
Oligotropha_carboxidovorans_OM5 2 2
Oligotropha_carboxidovorans_OM5 2 2
Rhodopseudomonas_palustris_DX-1 2 2
Rhodopseudomonas_palustris_TIE-1 2 2
Rhodopseudomonas_palustris_HaA2 2 2
Rhodopseudomonas_palustris_BisB5 2 2
Rhodopseudomonas_palustris_BisB18 3 3
Rhodopseudomonas_palustris_CGA009 2 2
Bradyrhizobium_sp._S23321 2 2
Bradyrhizobium_sp._BTAi1 2 2
Bradyrhizobium_oligotrophicum_S58 2 2
Bradyrhizobium_japonicum_USDA_6 2 2
Bartonella_vinsonii_subsp._berkhoffii_str._Winnie 1 1
Bartonella_quintana_RM-11 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Mannheimia_haemolytica_USMARC_2286 1 1
Mannheimia_haemolytica_M42548 1 1
Mannheimia_haemolytica_D174 1 1
Mannheimia_haemolytica_D171 1 1
Mannheimia_haemolytica_D153 1 1
Mannheimia_haemolytica_USDA-ARS-USMARC-183 1 1
Mannheimia_haemolytica_USDA-ARS-USMARC-185 1 1
Aeromonas_hydrophila_ML09-119 1 1
Vibrio_fischeri_ES114 1 1
Vibrio_sp._EJY3 1 1
Vibrio_parahaemolyticus_BB22OP 2 2
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 2 2
Vibrio_anguillarum_Listonella_anguillarum_M3 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Vibrio_vulnificus_CMCP6 1 1
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_LMA3984-4 1 1
Vibrio_cholerae_M66-2 1 1
Vibrio_cholerae_O395 1 1
Vibrio_cholerae_IEC224 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1 1
Idiomarina_loihiensis_GSL_199 1 1
Shewanella_sp._W3-18-1 3 3
Shewanella_sp._ANA-3 3 3
Shewanella_baltica_BA175 2 2
Shewanella_baltica_OS678 2 2
Shewanella_baltica_OS117 2 2
Shewanella_baltica_OS223 2 2
Shewanella_baltica_OS195 2 2
Shewanella_baltica_OS155 2 2
Shewanella_sp._MR-7 2 2
Shewanella_putrefaciens_200 3 3
Glaciecola_psychrophila_170 2 2
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_U8' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_U7' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_U4' 3 3
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 2 2
Alteromonas_macleodii_str._'English_Channel_615' 4 4
Alteromonas_macleodii_AltDE1 3 3
Alteromonas_macleodii_str._'English_Channel_673' 3 3
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 3 3
Alteromonas_macleodii_str._'Black_Sea_11' 3 3
Alteromonas_macleodii_ATCC_27126 3 3
Alcanivorax_dieselolei_B5 1 1
Thalassolituus_oleivorans_MIL-1 1 1
Stenotrophomonas_maltophilia_D457 2 2
Stenotrophomonas_maltophilia_JV3 3 3
Stenotrophomonas_maltophilia_R551-3 3 3
Xylella_fastidiosa_subsp._fastidiosa_GB514 1 1
Xylella_fastidiosa_Temecula1 1 1
Xylella_fastidiosa_9a5c 1 1
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 3 3
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Xanthomonas_campestris_pv._raphani_756C 2 2
Xanthomonas_campestris_pv._campestris_str._8004 3 3
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 3 3
Legionella_pneumophila_str._Paris 1 1
Legionella_pneumophila_str._Lens 1 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1
Proteus_mirabilis_BB2000 3 3
Morganella_morganii_subsp._morganii_KT 2 2
Yersinia_pseudotuberculosis_PB1/+ 4 4
Yersinia_pseudotuberculosis_YPIII 3 3
Yersinia_pseudotuberculosis_IP_32953 4 4
Yersinia_pestis_biovar_Microtus_str._91001 5 5
Yersinia_pestis_A1122 4 4
Yersinia_pestis_Z176003 5 5
Yersinia_pestis_D182038 5 5
Yersinia_pestis_D106004 5 5
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 5 5
Yersinia_pestis_Nepal516 4 4
Yersinia_pestis_Antiqua 5 5
Yersinia_pestis_Angola 4 4
Yersinia_pestis_CO92 5 5
Yersinia_pestis_KIM10+ 4 4
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 4 4
Yersinia_enterocolitica_subsp._palearctica_Y11 3 3
Serratia_sp._AS13 1 1
Serratia_marcescens_FGI94 1 1
Serratia_marcescens_WW4 2 2
Serratia_liquefaciens_ATCC_27592 1 1
Dickeya_dadantii_Ech586 1 1
Dickeya_dadantii_3937 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1
Pantoea_ananatis_LMG_5342 1 1
Pantoea_ananatis_PA13 1 1
Pantoea_ananatis_AJ13355 1 1
Erwinia_pyrifoliae_DSM_12163 1 1
Erwinia_amylovora_CFBP1430 1 1
Raoultella_ornithinolytica_B6 1 1
Shigella_sonnei_53G 1 1
Shigella_flexneri_2a_str._301 1 1
Shigella_dysenteriae_1617 1 1
Shigella_boydii_Sb227 1 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 2 2
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Klebsiella_oxytoca_KCTC_1686 2 2
Klebsiella_pneumoniae_JM45 1 1
Klebsiella_pneumoniae_CG43 1 1
Klebsiella_pneumoniae_KCTC_2242 1 1
Klebsiella_pneumoniae_342 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 2 2
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Enterobacter_aerogenes_EA1509E 3 3
Escherichia_coli_E24377A 1 1
Escherichia_coli_E._coli_PMV-1 1 1
Escherichia_coli_LY180 1 1
Escherichia_coli_APEC_O78 1 1
Escherichia_coli_O7:K1_str._CE10 1 1
Escherichia_coli_O104:H4_str._2009EL-2050 1 1
Escherichia_coli_O104:H4_str._2009EL-2071 1 1
Escherichia_coli_O104:H4_str._2011C-3493 1 1
Escherichia_coli_P12b 1 1
Escherichia_coli_str._'clone_D_i2' 1 1
Escherichia_coli_str._'clone_D_i14' 1 1
Escherichia_coli_UM146 1 1
Escherichia_coli_042 1 1
Escherichia_coli_Xuzhou21 1 1
Escherichia_coli_IHE3034 1 1
Escherichia_coli_UMNK88 2 2
Escherichia_coli_O83:H1_str._NRG_857C 1 1
Escherichia_coli_ABU_83972 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_LF82 1 1
Escherichia_coli_IAI39 1 1
Escherichia_coli_UMN026 1 1
Escherichia_coli_55989 1 1
Escherichia_coli_S88 1 1
Escherichia_coli_IAI1 1 1
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_ATCC_8739 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_SMS-3-5 1 1
Escherichia_coli_SE11 1 1
Escherichia_coli_APEC_O1 1 1
Escherichia_coli_O103:H2_str._12009 1 1
Escherichia_coli_UTI89 1 1
Escherichia_coli_536 1 1
Escherichia_coli_HS 1 1
Escherichia_coli_ETEC_H10407 1 1
Escherichia_coli_O55:H7_str._RM12579 1 1
Escherichia_coli_O55:H7_str._CB9615 1 1
Escherichia_coli_O26:H11_str._11368 1 1
Escherichia_coli_CFT073 1 1
Escherichia_coli_O111:H-_str._11128 1 1
Escherichia_coli_O157:H7_str._TW14359 1 1
Escherichia_coli_O157:H7_str._EC4115 1 1
Escherichia_coli_O157:H7_str._Sakai 1 1
Escherichia_coli_O157:H7_str._EDL933 1 1
Escherichia_coli_BW2952 1 1
Escherichia_coli_str._K-12_substr._MG1655 1 1
Escherichia_coli_str._K-12_substr._W3110 1 1
Escherichia_coli_str._K-12_substr._DH10B 1 1
Escherichia_coli_B_str._REL606 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1 1
Pseudomonas_denitrificans_ATCC_13867 2 2
Pseudomonas_stutzeri_CCUG_29243 2 2
Pseudomonas_stutzeri_DSM_4166 2 2
Pseudomonas_stutzeri_RCH2 2 2
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 2 2
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_H8234 4 4
Pseudomonas_putida_HB3267 1 1
Pseudomonas_putida_NBRC_14164 2 2
Pseudomonas_putida_S16 2 2
Pseudomonas_putida_W619 1 1
Pseudomonas_putida_ND6 2 2
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 1 1
Pseudomonas_protegens_CHA0 2 2
Pseudomonas_poae_RE*1-1-14 1 1
Pseudomonas_fluorescens_F113 3 3
Pseudomonas_fluorescens_A506 2 2
Pseudomonas_fluorescens_R124 2 2
Pseudomonas_fluorescens_Pf0-1 2 2
Pseudomonas_resinovorans_NBRC_106553 1 1
Pseudomonas_mendocina_NK-01 2 2
Pseudomonas_aeruginosa_SCV20265 2 2
Pseudomonas_aeruginosa_MTB-1 3 3
Pseudomonas_aeruginosa_LES431 2 2
Pseudomonas_aeruginosa_RP73 2 2
Pseudomonas_aeruginosa_B136-33 2 2
Pseudomonas_aeruginosa_PA1R 2 2
Pseudomonas_aeruginosa_PA1 2 2
Pseudomonas_aeruginosa_DK2 3 3
Pseudomonas_aeruginosa_NCGM2.S1 3 3
Pseudomonas_aeruginosa_M18 2 2
Pseudomonas_aeruginosa_LESB58 2 2
Pseudomonas_aeruginosa_PA7 2 2
Pseudomonas_aeruginosa_PAO1 2 2
Acinetobacter_genomosp._13TU__RUH2624 3 3
Acinetobacter_sp.__SH024 3 3
Acinetobacter_calcoaceticus_ruh2202 3 3
Acinetobacter_baumannii_ZW85-1 3 3
Acinetobacter_baumannii_TYTH-1 3 3
Acinetobacter_baumannii_BJAB0868 3 3
Acinetobacter_baumannii_BJAB0715 3 3
Acinetobacter_baumannii_BJAB07104 3 3
Acinetobacter_baumannii_TCDC-AB0715 3 3
Acinetobacter_baumannii_D1279779 3 3
Acinetobacter_baumannii_MDR-TJ 3 3
Acinetobacter_baumannii_1656-2 3 3
Acinetobacter_baumannii__ATCC_19606 3 3
Acinetobacter_baumannii_AB307-0294 3 3
Acinetobacter_baumannii_AYE 3 3
Acinetobacter_baumannii_SDF 3 3
Acinetobacter_baumannii_MDR-ZJ06 3 3
Acinetobacter_baumannii_AB0057 3 3
Acinetobacter_baumannii_ACICU 3 3
Acinetobacter_radioresistens__SH164 2 2
Acinetobacter_junii__SH205 5 5
Acinetobacter_johnsonii__SH046 4 4
Acinetobacter_lwoffii__SH145 2 2
Methylophaga_sp._JAM7 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1 1
Caldisphaera_lagunensis_DSM_15908 1 1
Sulfolobus_islandicus_LAL14/1 1 1
Sulfolobus_islandicus_REY15A 1 1
Sulfolobus_islandicus_HVE10/4 1 1
Sulfolobus_islandicus_Y.G.57.14 1 1
Sulfolobus_islandicus_L.S.2.15 1 1
Sulfolobus_islandicus_M.16.27 1 1
Sulfolobus_islandicus_M.14.25 1 1
Sulfolobus_islandicus_M.16.4 1 1
Sulfolobus_islandicus_L.D.8.5 1 1
Sulfolobus_solfataricus_98/2 1 1
Sulfolobus_acidocaldarius_SUSAZ 1 1
Sulfolobus_acidocaldarius_Ron12/I 1 1
Sulfolobus_acidocaldarius_N8 1 1
Methanosarcina_mazei_Tuc01 1 1
Archaeoglobus_sulfaticallidus_PM70-1 1 1
Thermococcus_sp._AM4 1 1
Thermococcus_sp._CL1 1 1
Thermococcus_litoralis_DSM_5473 1 1
Pyrococcus_sp._NA2 1 1
Pyrococcus_furiosus_DSM_3638 1 1
Halorhabdus_tiamatea_SARL4B 1 1
Haloarcula_hispanica_N601 2 2

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   123 107
Pan_troglodytes_69_2.1.4   (Chimpanzee)   109 95
Gorilla_gorilla_69_3.1   (Western gorilla)   120 104
Pongo_abelii_69_2   (Sumatran orangutan)   115 100
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   111 97
Macaca_mulatta_69_1   (Rhesus monkey)   127 111
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   120 105
Otolemur_garnettii_69_3   (Small-eared galago)   126 110
Microcebus_murinus_69_1   (Gray mouse lemur)   107 87
Rattus_norvegicus_69_3.4   (Norway rat)   124 107
Mus_musculus_69_38   (House mouse)   116 101
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   114 91
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   112 100
Cavia_porcellus_69_3   (Domestic guinea pig)   112 98
Oryctolagus_cuniculus_69_2   (Rabbit)   118 105
Ochotona_princeps_69   (American pika)   117 93
Tupaia_belangeri_69   (Northern tree shrew)   98 79
Sus_scrofa_69_10.2   (Pig)   118 107
Bos_taurus_69_3.1   (Cattle)   118 102
Vicugna_pacos_69_1   (Alpaca)   91 72
Tursiops_truncatus_69_1   (Bottlenose dolphin)   116 99
Mustela_putorius_furo_69_1.0   (Domestic ferret)   115 98
Ailuropoda_melanoleuca_69_1   (Giant panda)   117 101
Canis_familiaris_69_3.1   (Dog)   119 102
Felis_catus_69   (Domestic cat)   113 87
Equus_caballus_69_2   (Horse)   112 100
Myotis_lucifugus_69_2.0   (Little brown bat)   113 101
Pteropus_vampyrus_69_1   (Large flying fox)   115 97
Sorex_araneus_69_1   (European shrew)   86 67
Erinaceus_europaeus_69   (Western European hedgehog)   101 81
Procavia_capensis_69_1   (Cape rock hyrax)   114 88
Loxodonta_africana_69_3   (African savanna elephant)   115 101
Echinops_telfairi_69   (Small Madagascar hedgehog)   107 83
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   107 85
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   89 72
Macropus_eugenii_69_1.0   (Tammar wallaby)   108 86
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   105 94
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   117 102
Ornithorhynchus_anatinus_69_5   (Platypus)   119 105
Petromyzon_marinus_69_7.0   (Sea lamprey)   73 65
Meleagris_gallopavo_69_2   (Turkey)   115 100
Gallus_gallus_69_2   (Chicken)   112 96
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   131 112
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   108 94
Anolis_carolinensis_69_2.0   (Green anole)   122 107
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   116 101
Latimeria_chalumnae_69_1   (Coelacanth)   124 105
Gadus_morhua_69_1   (Atlantic cod)   143 120
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   155 133
Takifugu_rubripes_69_4   (Torafugu)   145 123
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   152 129
Oryzias_latipes_69_1   (Japanese medaka)   136 115
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   156 138
Oreochromis_niloticus_69_1.0   (Nile tilapia)   155 130
Danio_rerio_69_9   (Zebrafish)   183 155
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   60 48
Ciona_intestinalis_69   (Vase tunicate)   69 54
Drosophila_melanogaster_69_5   (Fruit fly)   43 38
Caenorhabditis_elegans_69_215   (Roundworm)   128 121
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   16 15
Arabidopsis_thaliana_10   (Thale cress)   33 31

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   618 528
Homo_sapiens__(NCBI_version)   (Human)   252 212
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   116 101
Heliconius_numata__(Incomplete) 6 5
Loa_loa_v3.3_(Request)   (Eye worm)   77 73
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   85 82
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   62 58
Moniliophthora_perniciosa_FA553__(Genome_survey) 17 17
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   6 6
Lotus_japonicus__(Early_assembly) 28 26
Malus_x_domestica_(Duplicate)   (Apple)   74 69
Ricinus_communis__(Early_assembly)   (Castor bean)   32 30
Nicotiana_benthamiana_0.4.4_(Early_draft) 71 66
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   41 39
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   43 41
Phoenix_dactylifera__(Early_draft)   (Date palm)   25 25
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 143 143
UniProt__viral_sequences_(Viral) 247 247
NCBI_2017_08_genome 197267 176568
NCBI_viral_sequences_(Viral) 198 198
Protozoadb_2010_08_(Protozoadb) 612 564
TargetDB__(Targets) 759 670
PDB_chains_(SCOP_1.75)_(PDB) 63 60
Protein_Data_Bank_(all_PDB_sequenc) 917 882
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1857 1857
STRING_v9.0.5_(STRING) 7531 6728
Uniprot_2018_03_genome 101343 91386

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.