Domain combinations for Trimerization domain of TRAF superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a Trimerization domain of TRAF domain in that genome.

Complete genomes

Genome		Number	Proteins
Homo_sapiens_76_38	(Human)	7	7
Pan_troglodytes_76_2.1.4	(Chimpanzee)	2	2
Gorilla_gorilla_76_3.1	(Western gorilla)	2	2
Pongo_abelii_76_2	(Sumatran orangutan)	2	2
Nomascus_leucogenys_76_1.0	(Northern white-cheeked gibbon)	3	3
Papio_anubis_76	(Olive baboon)	2	2
Macaca_mulatta_76_1	(Rhesus monkey)	6	6
Callithrix_jacchus_76_3.2.1	(White-tufted-ear marmoset)	7	7
Otolemur_garnettii_76_3	(Small-eared galago)	2	2
Microcebus_murinus_76_1	(Gray mouse lemur)	1	1
Rattus_norvegicus_76_5.0	(Norway rat)	2	2
Mus_musculus_76_38	(House mouse)	5	5
Dipodomys_ordii_76_1	(Ord's kangaroo rat)	2	2
Ictidomys_tridecemlineatus_76_2	(Thirteen-lined ground squirrel)	3	3
Heterocephalus_glaber_v1.7-2	(Naked mole-rat)	2	2
Cavia_porcellus_76_3	(Domestic guinea pig)	2	2
Oryctolagus_cuniculus_76_2	(Rabbit)	1	1
Ochotona_princeps_76	(American pika)	2	2
Sus_scrofa_76_10.2	(Pig)	5	5
Bos_taurus_76_3.1	(Cattle)	2	2
Ovis_aries_76_3.1	(Sheep)	3	3
Vicugna_pacos_76_1	(Alpaca)	1	1
Tursiops_truncatus_76_1	(Bottlenose dolphin)	1	1
Mustela_putorius_furo_76_1.0	(Domestic ferret)	2	2
Ailuropoda_melanoleuca_76_1	(Giant panda)	2	2
Canis_familiaris_76_3.1	(Dog)	4	4
Felis_catus_76_6.2	(Domestic cat)	2	2
Equus_caballus_76_2	(Horse)	2	2
Myotis_lucifugus_76_2.0	(Little brown bat)	1	1
Pteropus_vampyrus_76_1	(Large flying fox)	1	1
Sorex_araneus_76_1	(European shrew)	1	1
Erinaceus_europaeus_76	(Western European hedgehog)	1	1
Procavia_capensis_76_1	(Cape rock hyrax)	2	2
Loxodonta_africana_76_3	(African savanna elephant)	3	3
Echinops_telfairi_76	(Small Madagascar hedgehog)	1	1
Dasypus_novemcinctus_76_2	(Nine-banded armadillo)	2	2
Choloepus_hoffmanni_76_1	(Hoffmann's two-fingered sloth)	1	1
Macropus_eugenii_76_1.0	(Tammar wallaby)	2	2
Sarcophilus_harrisii_76_7.0	(Tasmanian devil)	3	3
Monodelphis_domestica_76_5	(Gray short-tailed opossum)	2	2
Ornithorhynchus_anatinus_76_5	(Platypus)	2	2
Saccoglossus_kowalevskii_v3.0		14	14
Petromyzon_marinus_76_7.0	(Sea lamprey)	1	1
Meleagris_gallopavo_76_2	(Turkey)	2	2
Gallus_gallus_76_4	(Chicken)	2	2
Anas_platyrhynchos_76_1.0	(Mallard)	2	2
Taeniopygia_guttata_76_3.2.4	(Zebra finch)	2	2
Ficedula_albicollis_76_1.0	(Collared flycatcher)	2	2
Pelodiscus_sinensis_76_1.0	(Chinese soft-shelled turtle)	2	2
Anolis_carolinensis_76_2.0	(Green anole)	2	2
Xenopus_laevis_	(African clawed frog)	2	2
Xenopus_tropicalis_76_4.2	(Tropical clawed frog)	2	2
Latimeria_chalumnae_76_1	(Coelacanth)	3	3
Lepisosteus_oculatus_76	(Spotted gar)	3	3
Gadus_morhua_76_1	(Atlantic cod)	3	3
Tetraodon_nigroviridis_76_8	(Spotted green pufferfish)	5	5
Takifugu_rubripes_76_4	(Torafugu)	29	29
Gasterosteus_aculeatus_76_1	(Three-spined stickleback)	6	6
Oryzias_latipes_76_1	(Japanese medaka)	4	4
Xiphophorus_maculatus_76_4.4.2	(Southern platyfish)	4	4
Poecilia_formosa_76	(Amazon molly)	4	4
Oreochromis_niloticus_76_1.0	(Nile tilapia)	7	7
Astyanax_mexicanus_76	(Mexican tetra)	3	3
Danio_rerio_76_9	(Zebrafish)	6	6
Ciona_savignyi_76_2.0	(Pacific transparent sea squirt)	1	1
Ciona_intestinalis_76	(Vase tunicate)	5	5
Adineta_vaga		2	2
Crassostrea_gigas_22	(Pacific oyster)	2	2
Nematostella_vectensis_1.0	(Starlet sea anemone)	1	1

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Strains

Genome		Number	Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)	(Tropical clawed frog)	2	2

Longest transcript per gene

Genome		Number	Proteins
Homo_sapiens_69_37	(Human)	2	2
Pan_troglodytes_69_2.1.4	(Chimpanzee)	2	2
Gorilla_gorilla_69_3.1	(Western gorilla)	2	2
Pongo_abelii_69_2	(Sumatran orangutan)	2	2
Nomascus_leucogenys_69_1.0	(Northern white-cheeked gibbon)	2	2
Macaca_mulatta_69_1	(Rhesus monkey)	2	2
Callithrix_jacchus_69_3.2.1	(White-tufted-ear marmoset)	3	3
Otolemur_garnettii_69_3	(Small-eared galago)	2	2
Microcebus_murinus_69_1	(Gray mouse lemur)	1	1
Rattus_norvegicus_69_3.4	(Norway rat)	2	2
Mus_musculus_69_38	(House mouse)	2	2
Dipodomys_ordii_69_1	(Ord's kangaroo rat)	2	2
Ictidomys_tridecemlineatus_69_2	(Thirteen-lined ground squirrel)	2	2
Cavia_porcellus_69_3	(Domestic guinea pig)	2	2
Oryctolagus_cuniculus_69_2	(Rabbit)	1	1
Ochotona_princeps_69	(American pika)	2	2
Sus_scrofa_69_10.2	(Pig)	2	2
Bos_taurus_69_3.1	(Cattle)	2	2
Vicugna_pacos_69_1	(Alpaca)	1	1
Tursiops_truncatus_69_1	(Bottlenose dolphin)	1	1
Mustela_putorius_furo_69_1.0	(Domestic ferret)	2	2
Ailuropoda_melanoleuca_69_1	(Giant panda)	2	2
Canis_familiaris_69_3.1	(Dog)	2	2
Felis_catus_69	(Domestic cat)	2	2
Equus_caballus_69_2	(Horse)	2	2
Myotis_lucifugus_69_2.0	(Little brown bat)	1	1
Pteropus_vampyrus_69_1	(Large flying fox)	1	1
Sorex_araneus_69_1	(European shrew)	1	1
Erinaceus_europaeus_69	(Western European hedgehog)	1	1
Procavia_capensis_69_1	(Cape rock hyrax)	2	2
Loxodonta_africana_69_3	(African savanna elephant)	2	2
Echinops_telfairi_69	(Small Madagascar hedgehog)	1	1
Choloepus_hoffmanni_69_1	(Hoffmann's two-fingered sloth)	1	1
Macropus_eugenii_69_1.0	(Tammar wallaby)	2	2
Sarcophilus_harrisii_69_7.0	(Tasmanian devil)	2	2
Monodelphis_domestica_69_5	(Gray short-tailed opossum)	2	2
Ornithorhynchus_anatinus_69_5	(Platypus)	2	2
Petromyzon_marinus_69_7.0	(Sea lamprey)	1	1
Meleagris_gallopavo_69_2	(Turkey)	2	2
Gallus_gallus_69_2	(Chicken)	2	2
Taeniopygia_guttata_69_3.2.4	(Zebra finch)	2	2
Pelodiscus_sinensis_69_1.0	(Chinese soft-shelled turtle)	2	2
Anolis_carolinensis_69_2.0	(Green anole)	2	2
Xenopus_tropicalis_69_4.2	(Tropical clawed frog)	2	2
Latimeria_chalumnae_69_1	(Coelacanth)	3	3
Gadus_morhua_69_1	(Atlantic cod)	3	3
Tetraodon_nigroviridis_69_8	(Spotted green pufferfish)	4	4
Takifugu_rubripes_69_4	(Torafugu)	4	4
Gasterosteus_aculeatus_69_1	(Three-spined stickleback)	4	4
Oryzias_latipes_69_1	(Japanese medaka)	3	3
Xiphophorus_maculatus_69_4.4.2	(Southern platyfish)	4	4
Oreochromis_niloticus_69_1.0	(Nile tilapia)	4	4
Danio_rerio_69_9	(Zebrafish)	5	5
Ciona_savignyi_69_2.0	(Pacific transparent sea squirt)	1	1
Ciona_intestinalis_69	(Vase tunicate)	5	5

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Others

Genome		Number	Proteins
Homo_sapiens_75_37_(old_version_GRC)	(Human)	9	9
Homo_sapiens__(NCBI_version)	(Human)	5	5
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)	(House mouse)	2	2
PDB_chains_(SCOP_1.75)_(PDB)		6	6
TargetDB__(Targets)		2	2
Protein_Data_Bank_(all_PDB_sequenc)		33	33
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		41	41
STRING_v9.0.5_(STRING)		71	71
Uniprot_2018_03_genome		549	549
NCBI_2017_08_genome		1583	1583

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