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Domain combinations for YWTD domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a YWTD domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   105 53
Pan_troglodytes_76_2.1.4   (Chimpanzee)   49 16
Gorilla_gorilla_76_3.1   (Western gorilla)   64 24
Pongo_abelii_76_2   (Sumatran orangutan)   40 13
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   43 17
Papio_anubis_76   (Olive baboon)   54 18
Macaca_mulatta_76_1   (Rhesus monkey)   67 27
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   94 42
Otolemur_garnettii_76_3   (Small-eared galago)   42 15
Microcebus_murinus_76_1   (Gray mouse lemur)   44 15
Rattus_norvegicus_76_5.0   (Norway rat)   46 17
Mus_musculus_76_38   (House mouse)   78 34
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   46 14
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   41 18
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   51 16
Cavia_porcellus_76_3   (Domestic guinea pig)   45 16
Oryctolagus_cuniculus_76_2   (Rabbit)   42 14
Ochotona_princeps_76   (American pika)   46 14
Tupaia_belangeri_76   (Northern tree shrew)   44 14
Sus_scrofa_76_10.2   (Pig)   36 22
Bos_taurus_76_3.1   (Cattle)   39 13
Ovis_aries_76_3.1   (Sheep)   61 17
Vicugna_pacos_76_1   (Alpaca)   30 9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   47 14
Mustela_putorius_furo_76_1.0   (Domestic ferret)   48 16
Ailuropoda_melanoleuca_76_1   (Giant panda)   57 22
Canis_familiaris_76_3.1   (Dog)   75 24
Felis_catus_76_6.2   (Domestic cat)   59 22
Equus_caballus_76_2   (Horse)   67 23
Myotis_lucifugus_76_2.0   (Little brown bat)   48 18
Pteropus_vampyrus_76_1   (Large flying fox)   46 14
Sorex_araneus_76_1   (European shrew)   30 10
Erinaceus_europaeus_76   (Western European hedgehog)   37 11
Procavia_capensis_76_1   (Cape rock hyrax)   46 13
Loxodonta_africana_76_3   (African savanna elephant)   61 21
Echinops_telfairi_76   (Small Madagascar hedgehog)   40 14
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   63 22
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   32 12
Macropus_eugenii_76_1.0   (Tammar wallaby)   48 15
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   56 21
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   43 16
Ornithorhynchus_anatinus_76_5   (Platypus)   51 25
Saccoglossus_kowalevskii_v3.0 128 45
Petromyzon_marinus_76_7.0   (Sea lamprey)   30 13
Meleagris_gallopavo_76_2   (Turkey)   55 19
Gallus_gallus_76_4   (Chicken)   50 15
Anas_platyrhynchos_76_1.0   (Mallard)   43 16
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   49 16
Ficedula_albicollis_76_1.0   (Collared flycatcher)   49 16
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   51 21
Anolis_carolinensis_76_2.0   (Green anole)   44 13
Xenopus_laevis_   (African clawed frog)   32 20
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   44 18
Latimeria_chalumnae_76_1   (Coelacanth)   58 23
Lepisosteus_oculatus_76   (Spotted gar)   72 23
Gadus_morhua_76_1   (Atlantic cod)   65 27
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   101 34
Takifugu_rubripes_76_4   (Torafugu)   246 93
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   76 31
Oryzias_latipes_76_1   (Japanese medaka)   63 24
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   69 27
Poecilia_formosa_76   (Amazon molly)   65 23
Oreochromis_niloticus_76_1.0   (Nile tilapia)   85 34
Astyanax_mexicanus_76   (Mexican tetra)   62 32
Danio_rerio_76_9   (Zebrafish)   121 54
Oikopleura_dioica 12 6
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   91 37
Ciona_intestinalis_76   (Vase tunicate)   27 23
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   160 119
Adineta_vaga 70 56
Octopus_bimaculoides_280 41 23
Crassostrea_gigas_22   (Pacific oyster)   130 81
Lottia_gigantea_   (Owl limpet)   54 26
Helobdella_robusta_ 31 17
Capitella_sp._I_ 76 38
Danaus_plexippus_OGS1.0   (Monarch butterfly)   38 15
Heliconius_melpomene_   (Postman butterfly)   34 14
Bombyx_mori_   (Domestic silkworm)   32 22
Nasonia_vitripennis_   (Jewel wasp)   34 17
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   84 35
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   22 8
Linepithema_humile_v1.1   (Argentine ant)   12 7
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   13 6
Solenopsis_invicta_v.2.2.3   (Red fire ant)   12 9
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   22 10
Atta_cephalotes_v1.1 15 10
Camponotus_floridanus_v3.3   (Florida carpenter ant)   31 18
Lucilia_cuprina   (Australian sheep blowfly)   38 10
Drosophila_grimshawi_1.3 32 10
Drosophila_willistoni_1.3 33 10
Drosophila_pseudoobscura_2.13 38 15
Drosophila_persimilis_1.3 47 22
Drosophila_suzukii 34 11
Drosophila_yakuba_1.3 32 11
Drosophila_simulans_1.3 21 9
Drosophila_sechellia_1.3 33 12
Drosophila_melanogaster_76_5   (Fruit fly)   65 30
Drosophila_erecta_1.3 34 11
Drosophila_ananassae_1.3 33 11
Drosophila_virilis_1.2 32 10
Drosophila_mojavensis_1.3 33 11
Megaselia_scalaris_22 14 12
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   39 13
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   29 14
Anopheles_darlingi_22   (American malaria mosquito)   26 9
Anopheles_gambiae_49_3j   (African malaria mosquito)   35 11
Tribolium_castaneum_3.0   (Red flour beetle)   36 14
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   34 10
Acyrthosiphon_pisum_   (Pea aphid)   36 14
Rhodnius_prolixus_22 34 13
Daphnia_pulex_   (Common water flea)   53 25
Strigamia_maritima_22 38 16
Sarcoptes_scabiei 31 12
Tetranychus_urticae_   (Two-spotted spider mite)   38 25
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   18 8
Pristionchus_pacificus_ 19 12
Meloidogyne_incognita_   (Southern root-knot nematode)   22 6
Meloidogyne_hapla_ 2 2
Onchocerca_volvulus_22 13 4
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   41 16
Caenorhabditis_japonica_ 21 8
Caenorhabditis_brenneri_ 33 19
Caenorhabditis_remanei_ 22 8
Caenorhabditis_elegans_76_235   (Roundworm)   25 11
Caenorhabditis_briggsae_2 21 7
Trichinella_spiralis_22 27 10
Hymenolepis_microstoma_ 6 3
Echinococcus_multilocularis_ 6 3
Echinococcus_granulosus_ 7 4
Taenia_solium_   (Pork tapeworm)   8 5
Schistosoma_mansoni_ 4 4
Mnemiopsis_leidyi   (Sea walnut)   26 12
Thelohanellus_kitauei 5 5
Acropora_digitifera_v1.0 68 39
Nematostella_vectensis_1.0   (Starlet sea anemone)   34 27
Hydra_vulgaris 22 12
Amphimedon_queenslandica 36 26
Trichoplax_adhaerens_ 9 6
Proterospongia_sp._ATCC_50818_ 39 39
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Mortierella_verticillata_NRRL_6337_ 1 1
Ustilago_maydis_ 2 2
Sphaerobolus_stellatus_v1.0 5 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1 1
Galerina_marginata_v1.0 2 2
Stereum_hirsutum_FP-91666_SS1__v1.0 1 1
Gloeophyllum_trabeumv1.0 2 2
Fomitiporia_mediterranea_v1.0 1 1
Apiospora_montagnei_NRRL_25634_v1.0 3 2
Magnaporthe_poae_ATCC_64411_22 1 1
Magnaporthe_grisea_70-15_ 3 2
Podospora_anserina_ 1 1
Chaetomium_globosum_CBS_148.51_ 1 1
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 2 2
Neurospora_crassa_OR74A_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 2 2
Trichoderma_atroviride_ 1 1
Trichoderma_virens_Gv29-8_ 2 2
Botrytis_cinerea_B05.10_ 1 1
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 4 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2 2
Cochliobolus_victoriae_FI3_v1.0 3 3
Cochliobolus_carbonum_26-R-13_v1.0 4 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2 2
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 4 4
Pyrenophora_teres_f._teres_22 2 2
Pyrenophora_tritici-repentis_ 1 1
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 3 3
Septoria_musiva_v1.0 2 2
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 2 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_verrucosum_HKI_0517_ 2 2
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 2 2
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 2 2
Aspergillus_fumigatus_Af293 1 1
Aspergillus_brasiliensis_v1.0 2 2
Aspergillus_nidulans_FGSC_A4_ 2 2
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 1 1
Aspergillus_glaucus 1 1
Aspergillus_carbonarius_ITEM_5010_ 2 2
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 2 2
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_niger_22 2 2
Aspergillus_niger_ATCC_1015_ 2 2
Aspergillus_flavus_NRRL3357_ 2 2
Aspergillus_clavatus_NRRL_1_ 1 1
Wickerhamomyces_anomalus 1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Spizellomyces_punctatus_DAOM_BR117_ 1 1
Dictyostelium_discoideum 5 5
Dictyostelium_purpureum_ 2 2
Entamoeba_dispar_1.2 1 1
Selaginella_moellendorffii_ 1 1
Picea_abies   (Norway spruce)   2 2
Eucalyptus_grandis_v201   (Rose gum)   4 4
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2 2
Gossypium_raimondii_v221 4 4
Citrus_clementina_v165 3 3
Citrus_sinensis_v154   (Sweet orange)   5 5
Thellungiella_halophila_v173 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 4 4
Arabidopsis_lyrata_   (Lyrate rockcress)   3 3
Arabidopsis_thaliana_10   (Thale cress)   2 2
Carica_papaya_   (Papaya)   3 3
Medicago_truncatula_   (Barrel medic)   8 8
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   4 4
Cucumis_sativus_v122   (Cucumber)   3 3
Fragaria_vesca_   (Wild strawberry)   1 1
Malus_domestica_v196   (Apple)   5 5
Prunus_persica_v139   (Peach)   2 2
Linum_usitatissimum_v200   (Flax)   5 5
Manihot_esculenta_v147   (Cassava)   2 2
Populus_trichocarpa_v156   (Black cottonwood)   1 1
Vitis_vinifera_   (Wine grape)   2 2
Mimulus_guttatus_v140   (Spotted monkey flower)   5 5
Solanum_lycopersicum_v.2.3   (Tomato)   3 3
Solanum_tuberosum_   (Potato)   1 1
Actinidia_chinensis_Hongyang_ 2 2
Aquilegia_coerulea_v195 4 4
Triticum_urartu_22 14 14
Triticum_aestivum_22   (Bread wheat)   11 11
Aegilops_tauschii_22 13 13
Brachypodium_distachyon_   (Stiff brome)   2 2
Oryza_barthii_22   (African wild rice)   3 3
Oryza_meridionalis_22 5 5
Oryza_glumaepatula_22 5 5
Oryza_glaberrima   (African rice)   2 2
Oryza_punctata_22 3 3
Oryza_nivara_22 7 7
Oryza_brachyantha_22   (Malo sina)   3 3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   5 5
Oryza_sativa_v193   (Rice)   5 5
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1 1
Panicum_virgatum_v202   (Switchgrass)   18 18
Setaria_italica_v164   (Foxtail millet)   6 6
Zea_mays_subsp._mays_   (Maize)   4 4
Zea_mays_v181   (Maize)   6 6
Sorghum_bicolor_   (Sorghum)   4 4
Musa_balbisiana   (Balbis banana)   2 2
Musa_acuminata_22   (Wild Malaysian banana)   2 2
Amborella_trichopoda_22 2 2
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 2 2
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 3 3
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 3 3
Micromonas_sp._RCC299_ 2 2
Micromonas_pusilla_CCMP1545_v3.0 2 2
Porphyridium_purpureum_02_2012 5 5
Thecamonas_trahens_ATCC_50062_ 1 1
Bigelowiella_natans_CCMP2755_22 27 23
Giardia_lamblia_2.3 1 1
Cyanophora_paradoxa_ 16 16
Leishmania_mexicana_2.4 2 2
Leishmania_major_strain_Friedlin_ 3 3
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_congolense_2.4 3 3
Trypanosoma_brucei_gambiense_v4.1 4 4
Trypanosoma_brucei_TREU927_v4.1 7 7
Ectocarpus_siliculosus 6 6
Aureococcus_anophagefferens_ 6 6
Albugo_laibachii_22 2 2
Pythium_iwayamai_DAOM_BR242034_22 4 4
Pythium_arrhenomanes_ATCC_12531_22 2 2
Pythium_ultimum_v1.7-2 3 3
Pythium_aphanidermatum_DAOM_BR444_22 4 4
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 2 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_sojae_1.1 1 1
Phytophthora_infestans_T30-4_ 2 2
Phytophthora_capsici_ 3 3
Hyaloperonospora_arabidopsidis_22 2 2
Phaeodactylum_tricornutumCCAP_1055/1 6 6
Fragilariopsis_cylindrus 1 1
Thalassiosira_pseudonana_CCMP1335 3 3
Perkinsus_marinus_ATCC_50983_ 23 22
Paramecium_tetraurelia_ 3 3
Tetrahymena_thermophila_SB210_1_ 1 1
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 2 2
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 2 2
Plasmodium_chabaudi_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 14 14
Naegleria_gruberi_ 77 69
Trichomonas_vaginalis_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 12 12
Emiliania_huxleyi_CCMP1516_ 51 51
Leptolyngbya_sp._PCC_7376 4 4
Pseudanabaena_sp._PCC_7367 2 2
Acaryochloris_marina_MBIC11017 2 2
Synechocystis_sp._PCC_6803 1 1
Thermosynechococcus_elongatus_BP-1 1 1
Synechococcus_sp._PCC_7502 1 1
Synechococcus_sp._PCC_6312 1 1
Synechococcus_sp._CC9311 1 1
Microcoleus_sp._PCC_7113 1 1
Trichodesmium_erythraeum_IMS101 6 5
Geitlerinema_sp._PCC_7407 2 2
Cyanothece_sp._PCC_8802 3 3
Gloeocapsa_sp._PCC_7428 3 3
Halothece_sp._PCC_7418 2 2
Microcystis_aeruginosa_NIES-843 3 3
Gloeobacter_violaceus_PCC_7421 3 3
Rivularia_sp._PCC_7116 7 7
Calothrix_sp._PCC_7507 1 1
Anabaena_variabilis_ATCC_29413 1 1
'Nostoc_azollae'_0708 2 2
Nostoc_sp._PCC_7107 5 5
Nostoc_punctiforme_PCC_73102 3 3
Nostoc_sp._PCC_7120 5 4
Nostoc_sp._PCC_7524 6 5
Anabaena_sp._90 4 4
Conexibacter_woesei_DSM_14684 5 4
Eggerthella_lenta_DSM_2243 1 1
Olsenella_uli_DSM_7084 1 1
Ilumatobacter_coccineus 2 2
Acidimicrobium_ferrooxidans_DSM_10331 1 1
Nakamurella_multipartita_DSM_44233 1 1
Kineococcus_radiotolerans_SRS30216 1 1
Catenulispora_acidiphila_DSM_44928 2 2
Stackebrandtia_nassauensis_DSM_44728 2 2
Frankia_symbiont_of_Datisca_glomerata 2 2
Frankia_sp._EAN1pec 2 2
Frankia_alni_ACN14a 3 3
Thermomonospora_curvata_DSM_43183 1 1
Streptosporangium_roseum_DSM_43021 2 2
Kitasatospora_setae_KM-6054 3 3
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 2 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 6 6
Streptomyces_violaceusniger_Tu_4113 3 3
Streptomyces_scabiei_87.22 3 3
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2 2
Actinosynnema_mirum_DSM_43827 2 2
Saccharopolyspora_erythraea_NRRL_2338 3 3
Amycolatopsis_mediterranei_U32 4 4
Kribbella_flavida_DSM_17836 4 4
Nocardioides_sp._JS614 1 1
Propionibacterium_propionicum_F0230a 1 1
Salinispora_arenicola_CNS-205 2 2
Salinispora_tropica_CNB-440 2 2
Verrucosispora_maris_AB-18-032 1 1
Micromonospora_sp._L5 3 3
Micromonospora_aurantiaca_ATCC_27029 3 3
Actinoplanes_sp._N902-109 5 5
Actinoplanes_sp._SE50/110 3 3
Actinoplanes_missouriensis_431 3 3
Rhodococcus_jostii_RHA1 2 2
Rhodococcus_equi_103S 2 2
Rhodococcus_opacus_B4 1 1
Nocardia_farcinica_IFM_10152 1 1
Mycobacterium_abscessus_ATCC_19977 1 1
Mycobacterium_sp._JLS 1 1
Mycobacterium_africanum_GM041182 1 1
Mycobacterium_tuberculosis_KZN_1435 1 1
Mycobacterium_tuberculosis 1 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Beutenbergia_cavernae_DSM_12333 1 1
Leifsonia_xyli_subsp._xyli_str._CTCB07 1 1
Intrasporangium_calvum_DSM_43043 1 1
Xylanimonas_cellulosilytica_DSM_15894 1 1
Cellulomonas_flavigena_DSM_20109 2 2
Arthrobacter_chlorophenolicus_A6 1 1
Arthrobacter_sp._FB24 2 2
Sphaerobacter_thermophilus_DSM_20745 1 1
Herpetosiphon_aurantiacus_DSM_785 3 3
Roseiflexus_sp._RS-1 1 1
Chloroflexus_sp._MS-G 2 2
Chloroflexus_sp._Y-400-fl 2 2
Chloroflexus_aggregans_DSM_9485 2 2
Chloroflexus_aurantiacus_J-10-fl 2 2
Deinococcus_deserti_VCD115 2 2
Deinococcus_maricopensis_DSM_21211 1 1
Deinococcus_proteolyticus_MRP 2 2
Deinococcus_radiodurans_R1 1 1
Meiothermus_silvanus_DSM_9946 1 1
Thermus_scotoductus_SA-01 1 1
Thermus_thermophilus_HB27 1 1
Clostridiales_genomosp._BVAB3_str._UPII9-5 1 1
Clostridium_clariflavum_DSM_19732 2 1
Ruminococcus_sp. 1 1
Thermincola_potens_JR 1 1
Desulfosporosinus_acidiphilus_SJ4 1 1
Desulfitobacterium_hafniense_Y51 1 1
Desulfotomaculum_acetoxidans_DSM_771 2 2
Desulfotomaculum_ruminis_DSM_2154 1 1
Eubacterium_eligens_ATCC_27750 1 1
Clostridium_sticklandii_DSM_519 1 1
Clostridium_lentocellum_DSM_5427 1 1
[Ruminococcus]_torques 1 1
Eubacterium_rectale_M104/1 1 1
Eubacterium_rectale_ATCC_33656 1 1
Coprococcus_sp._ART55/1 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Butyrivibrio_fibrisolvens 1 1
Clostridium_sp._BNL1100 1 1
Clostridium_novyi_NT 1 1
Clostridium_ljungdahlii_DSM_13528 1 1
Clostridium_kluyveri_DSM_555 1 1
Clostridium_beijerinckii_NCIMB_8052 1 1
Clostridium_botulinum_A_str._ATCC_3502 4 3
Caldicellulosiruptor_obsidiansis_OB47 1 1
Caldicellulosiruptor_bescii_DSM_6725 1 1
Lactobacillus_casei_ATCC_334 1 1
Lactobacillus_kefiranofaciens_ZW3 1 1
Lactobacillus_amylovorus_GRL1118 2 2
Lactobacillus_helveticus_DPC_4571 2 2
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 1 1
Lactobacillus_buchneri_NRRL_B-30929 2 2
Lactobacillus_buchneri 2 2
Lactobacillus_brevis_ATCC_367 1 1
Lactobacillus_acidophilus_30SC 2 2
Pediococcus_claussenii_ATCC_BAA-344 1 1
Kyrpidia_tusciae_DSM_2912 1 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1 1
Brevibacillus_brevis_NBRC_100599 2 2
Paenibacillus_mucilaginosus_3016 4 4
Listeria_welshimeri_serovar_6b_str._SLCC5334 1 1
Listeria_ivanovii_subsp._ivanovii_PAM_55 1 1
Solibacillus_silvestris_StLB046 1 1
Lysinibacillus_sphaericus_C3-41 1 1
Geobacillus_thermoleovorans_CCB_US3_UF5 1 1
Geobacillus_kaustophilus_HTA426 1 1
Geobacillus_sp._GHH01 1 1
Bacillus_subtilis_subsp._subtilis_str._168 1 1
Bacillus_cellulosilyticus_DSM_2522 1 1
Candidatus_Cloacamonas_acidaminovorans 1 1
Gemmatimonas_aurantiaca_T-27 2 2
Melioribacter_roseus_P3M 1 1
Ignavibacterium_album_JCM_16511 2 2
Chlorobium_chlorochromatii_CaD3 1 1
Chlorobaculum_parvum_NCIB_8327 1 1
Haliscomenobacter_hydrossis_DSM_1100 4 4
Saprospira_grandis_str._Lewin 1 1
Niastella_koreensis_GR20-10 3 3
Chitinophaga_pinensis_DSM_2588 2 2
Salinibacter_ruber_M8 1 1
Rhodothermus_marinus_DSM_4252 1 1
Flexibacter_litoralis_DSM_6794 1 1
Cyclobacterium_marinum_DSM_745 4 4
Marivirga_tractuosa_DSM_4126 1 1
Fibrella_aestuarina 5 5
Dyadobacter_fermentans_DSM_18053 1 1
Cytophaga_hutchinsonii_ATCC_33406 2 2
Spirosoma_linguale_DSM_74 10 10
Runella_slithyformis_DSM_19594 4 4
Parabacteroides_distasonis_ATCC_8503 6 6
Paludibacter_propionicigenes_WB4 2 2
Odoribacter_splanchnicus_DSM_20712 11 11
Bacteroides_sp._CF50 4 4
Prevotella_intermedia_17 3 3
Prevotella_ruminicola_23 2 2
Porphyromonas_asaccharolytica_DSM_20707 1 1
Alistipes_finegoldii_DSM_17242 1 1
Bacteroides_helcogenes_P_36-108 5 5
Bacteroides_vulgatus_ATCC_8482 2 2
Bacteroides_thetaiotaomicron_VPI-5482 5 5
Bacteroides_fragilis_YCH46 8 8
Pedobacter_saltans_DSM_12145 4 4
Solitalea_canadensis_DSM_3403 2 2
Pedobacter_heparinus_DSM_2366 3 3
Fluviicola_taffensis_DSM_16823 4 4
Owenweeksia_hongkongensis_DSM_17368 4 4
Zunongwangia_profunda_SM-A87 4 4
Gramella_forsetii_KT0803 3 3
Lacinutrix_sp._5H-3-7-4 1 1
Robiginitalea_biformata_HTCC2501 1 1
Croceibacter_atlanticus_HTCC2559 6 6
Aequorivita_sublithincola_DSM_14238 3 3
Cellulophaga_algicola_DSM_14237 1 1
Cellulophaga_lytica_DSM_7489 1 1
Flavobacteriaceae_bacterium_3519-10 2 2
Polaribacter_sp._MED152 1 1
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1 1
Capnocytophaga_canimorsus_Cc5 1 1
Weeksella_virosa_DSM_16922 2 2
Flavobacterium_indicum_GPTSA100-9 1 1
Flavobacterium_psychrophilum_JIP02/86 2 1
Flavobacterium_columnare_ATCC_49512 1 1
Flavobacterium_johnsoniae_UW101 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Isosphaera_pallida_ATCC_43644 1 1
Rhodopirellula_baltica_SH_1 6 5
Pirellula_staleyi_DSM_6068 1 1
Coraliomargarita_akajimensis_DSM_45221 2 2
Opitutus_terrae_PB90-1 2 2
Akkermansia_muciniphila_ATCC_BAA-835 1 1
Turneriella_parva_DSM_21527 10 9
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 6 5
Brachyspira_intermedia_PWS/A 1 1
Brachyspira_pilosicoli_95/1000 1 1
Brachyspira_hyodysenteriae_WA1 1 1
Treponema_azotonutricium_ZAS-9 2 2
Treponema_brennaborense_DSM_12168 2 2
Treponema_paraluiscuniculi_Cuniculi_A 1 1
Treponema_pallidum_subsp._pallidum_SS14 2 2
Treponema_denticola_ATCC_35405 1 1
Spirochaeta_africana_DSM_8902 1 1
Deferribacter_desulfuricans_SSM1 1 1
Flexistipes_sinusarabici_DSM_4947 1 1
Kosmotoga_olearia_TBF_19.5.1 1 1
Thermosipho_africanus_TCF52B 3 3
Thermotoga_lettingae_TMO 2 2
Thermotoga_thermarum_DSM_5069 1 1
Desulfurobacterium_thermolithotrophum_DSM_11699 1 1
Candidatus_Chloracidobacterium_thermophilum_B 2 2
Candidatus_Solibacter_usitatus_Ellin6076 9 9
Granulicella_tundricola_MP5ACTX9 6 6
Granulicella_mallensis_MP5ACTX8 4 4
Candidatus_Koribacter_versatilis_Ellin345 4 4
Terriglobus_saanensis_SP1PR4 2 2
Terriglobus_roseus_DSM_18391 7 7
Thermodesulfovibrio_yellowstonii_DSM_11347 1 1
Leptospirillum_ferrooxidans_C2-3 1 1
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 1 1
Bacteriovorax_marinus_SJ 1 1
Bdellovibrio_bacteriovorus_HD100 5 2
Nitratifractor_salsuginis_DSM_16511 1 1
Arcobacter_nitrofigilis_DSM_7299 1 1
Campylobacter_lari_RM2100 1 1
Campylobacter_curvus_525.92 1 1
Sulfurimonas_denitrificans_DSM_1251 1 1
Syntrophus_aciditrophicus_SB 1 1
Desulfomonile_tiedjei_DSM_6799 8 7
Syntrophobacter_fumaroxidans_MPOB 2 1
Desulfatibacillum_alkenivorans_AK-01 6 3
Desulfobacterium_autotrophicum_HRM2 2 2
Desulfococcus_oleovorans_Hxd3 1 1
Desulfovibrio_magneticus_RS-1 1 1
Desulfovibrio_salexigens_DSM_2638 1 1
Hippea_maritima_DSM_10411 1 1
Geobacter_daltonii_FRC-32 4 3
Geobacter_uraniireducens_Rf4 2 2
Geobacter_bemidjiensis_Bem 1 1
Pelobacter_carbinolicus_DSM_2380 1 1
Haliangium_ochraceum_DSM_14365 8 6
Sorangium_cellulosum_'So_ce_56' 16 15
Anaeromyxobacter_sp._Fw109-5 3 2
Anaeromyxobacter_dehalogenans_2CP-1 2 2
Stigmatella_aurantiaca_DW4/3-1 6 6
Corallococcus_coralloides_DSM_2259 9 8
Myxococcus_xanthus_DK_1622 6 6
Myxococcus_fulvus_HW-1 10 10
Methylibium_petroleiphilum_PM1 1 1
Rubrivivax_gelatinosus_IL144 1 1
Burkholderia_xenovorans_LB400 1 1
Cupriavidus_necator_N-1 1 1
Ralstonia_eutropha_H16 1 1
Burkholderia_sp._RPE64 2 2
Burkholderia_sp._CCGE1002 1 1
Burkholderia_thailandensis_E264 1 1
Burkholderia_pseudomallei_1106a 1 1
Burkholderia_mallei_SAVP1 1 1
Burkholderia_vietnamiensis_G4 1 1
Burkholderia_gladioli_BSR3 1 1
Ramlibacter_tataouinensis_TTB310 1 1
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 3 3
Polaromonas_sp._JS666 1 1
Nitrosospira_multiformis_ATCC_25196 1 1
Nitrosomonas_sp._Is79A3 3 3
Nitrosomonas_europaea_ATCC_19718 1 1
Sideroxydans_lithotrophicus_ES-1 1 1
Magnetococcus_marinus_MC-1 1 1
Parvularcula_bermudensis_HTCC2503 1 1
Brevundimonas_subvibrioides_ATCC_15264 1 1
Caulobacter_sp._K31 1 1
Caulobacter_segnis_ATCC_21756 1 1
Sphingopyxis_alaskensis_RB2256 1 1
Sphingomonas_wittichii_RW1 1 1
Dinoroseobacter_shibae_DFL_12 2 2
Pseudovibrio_sp._FO-BEG1 1 1
Jannaschia_sp._CCS1 1 1
Tistrella_mobilis_KA081020-065 1 1
Polymorphum_gilvum_SL003B-26A1 1 1
Micavibrio_aeruginosavorus_ARL-13 1 1
alpha_proteobacterium_HIMB59 1 1
Xanthobacter_autotrophicus_Py2 1 1
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 1 1
Methylobacterium_populi_BJ001 1 1
Parvibaculum_lavamentivorans_DS-1 1 1
Sinorhizobium_fredii_NGR234 1 1
Agrobacterium_radiobacter_K84 2 1
Mesorhizobium_sp._BNC1 2 2
Pelagibacterium_halotolerans_B2 1 1
Saccharophagus_degradans_2-40 3 3
Teredinibacter_turnerae_T7901 4 4
Cellvibrio_japonicus_Ueda107 2 1
Aggregatibacter_actinomycetemcomitans_D7S-1 1 1
Haemophilus_parainfluenzae_T3T1 1 1
Aliivibrio_salmonicida_LFI1238 1 1
Vibrio_fischeri_MJ11 1 1
Vibrio_harveyi_ATCC_BAA-1116 1 1
Photobacterium_profundum_SS9 1 1
Shewanella_piezotolerans_WP3 1 1
Shewanella_loihica_PV-4 1 1
Shewanella_halifaxensis_HAW-EB4 2 2
Shewanella_pealeana_ATCC_700345 1 1
Shewanella_oneidensis_MR-1 1 1
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_violacea_DSS12 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Colwellia_psychrerythraea_34H 1 1
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_atlantica_T6c 1 1
Pseudoalteromonas_haloplanktis_TAC125 1 1
Glaciecola_sp._4H-3-7+YE-5 2 2
Glaciecola_nitratireducens_FR1064 2 1
Marinobacter_adhaerens_HP15 1 1
Alteromonas_sp._SN2 1 1
Alteromonas_macleodii_str._'Deep_ecotype' 1 1
Kangiella_koreensis_DSM_16069 1 1
Hahella_chejuensis_KCTC_2396 2 2
Marinomonas_mediterranea_MMB-1 1 1
Legionella_longbeachae_NSW150 1 1
Providencia_stuartii_MRSN_2154 2 1
Pantoea_sp._At-9b 1 1
Enterobacter_aerogenes_KCTC_2190 1 1
Escherichia_fergusonii_ATCC_35469 1 1
Azotobacter_vinelandii_DJ 1 1
Pseudomonas_entomophila_L48 1 1
Pseudomonas_putida_F1 1 1
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_mendocina_ymp 1 1
Thiomicrospira_crunogena_XCL-2 1 1
Cenarchaeum_symbiosum_A 7 7
Candidatus_Nitrosopumilus_sp._AR2 2 2
Nitrosopumilus_maritimus_SCM1 1 1
Desulfurococcus_fermentans_DSM_16532 1 1
Desulfurococcus_kamchatkensis_1221n 1 1
Sulfolobus_tokodaii_str._7 3 2
Pyrobaculum_arsenaticum_DSM_13514 1 1
Methanocella_arvoryzae_MRE50 1 1
Methanocella_paludicola_SANAE 2 1
Methanosaeta_harundinacea_6Ac 1 1
Methanosaeta_concilii_GP6 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 3 3
Methanosphaerula_palustris_E1-9c 3 3
Methanoplanus_petrolearius_DSM_11571 2 2
Methanoculleus_bourgensis_MS2 1 1
Methanoculleus_marisnigri_JR1 1 1
Pyrococcus_furiosus_COM1 2 2
Natrinema_sp._J7-2 1 1
Halogeometricum_borinquense_DSM_11551 1 1
Halalkalicoccus_jeotgali_B3 1 1
Methanocaldococcus_sp._FS406-22 1 1
Methanobrevibacter_smithii_ATCC_35061 1 1
Aciduliprofundum_sp._MAR08-339 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   48 17
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   54 26
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   37 13
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   21 8
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   24 10
Ajellomyces_dermatitidis_ER-3_ 2 2
Aspergillus_fumigatus_A1163_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2 2
Hordeum_vulgare_22   (Domesticated barley)   15 15
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5 5
Trypanosoma_brucei_Lister_427_v4.1 6 6
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1
Chroococcidiopsis_thermalis_PCC_7203 1 1
Chamaesiphon_minutus_PCC_6605 2 2
Synechocystis_sp._PCC_6803_substr._PCC-P 1 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1 1
Synechocystis_sp._PCC_6803_substr._GT-I 1 1
Synechocystis_sp._PCC_6803 1 1
Dactylococcopsis_salina_PCC_8305 2 2
Synechococcus_sp._JA-2-3B'a(2-13) 1 1
Synechococcus_sp._CC9605 1 1
Synechococcus_sp._PCC_7002 1 1
Synechococcus_elongatus_PCC_6301 1 1
Prochlorococcus_marinus_str._MIT_9211 1 1
Crinalium_epipsammum_PCC_9333 1 1
Oscillatoria_nigro-viridis_PCC_7112 3 3
Oscillatoria_acuminata_PCC_6304 2 2
Arthrospira_platensis_NIES-39 2 2
Cyanothece_sp._PCC_7822 4 4
Cyanothece_sp._PCC_7425 2 2
Cyanothece_sp._PCC_7424 2 2
Cyanothece_sp._ATCC_51142 4 4
Cyanothece_sp._PCC_8801 4 4
Cyanobacterium_aponinum_PCC_10605 1 1
Cyanobacterium_stanieri_PCC_7202 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 2 2
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 4 4
Stanieria_cyanosphaera_PCC_7437 2 2
Calothrix_parietina_Calothrix_sp._PCC_6303 3 3
Cylindrospermum_stagnale_PCC_7417 4 4
Anabaena_cylindrica_PCC_7122 1 1
Frankia_sp._EuI1c 3 3
Streptomyces_albus_J1074 1 1
Streptomyces_rapamycinicus_NRRL_5491 2 2
Streptomyces_davawensis_JCM_4913 5 5
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 3 3
Streptomyces_collinus_Tu_365 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2 2
Saccharothrix_espanaensis_DSM_44229 3 3
Amycolatopsis_mediterranei_RB 4 4
Amycolatopsis_mediterranei_S699 4 4
Amycolatopsis_mediterranei_S699 4 4
Amycolatopsis_orientalis_HCCB10007 1 1
Propionibacterium_acidipropionici_ATCC_4875 1 1
Actinoplanes_friuliensis_DSM_7358 1 1
Rhodococcus_pyridinivorans_SB3094 1 1
Nocardia_brasiliensis_ATCC_700358 2 2
Mycobacterium_abscessus_subsp._bolletii_50594 2 1
Mycobacterium_sp._KMS 1 1
Mycobacterium_sp._MCS 1 1
Mycobacterium_tuberculosis_EAI5/NITR206 1 1
Mycobacterium_tuberculosis_EAI5 1 1
Mycobacterium_tuberculosis_CAS/NITR204 1 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1 1
Mycobacterium_tuberculosis_CTRI-2 1 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1 1
Mycobacterium_tuberculosis_KZN_605 1 1
Mycobacterium_tuberculosis_KZN_4207 1 1
Mycobacterium_tuberculosis_CCDC5180 1 1
Mycobacterium_tuberculosis_CCDC5079 1 1
Mycobacterium_tuberculosis_CCDC5079 1 1
Mycobacterium_tuberculosis_H37Ra 1 1
Mycobacterium_tuberculosis_str._Haarlem/NITR202 1 1
Mycobacterium_tuberculosis_str._Haarlem 1 1
Mycobacterium_tuberculosis_F11 1 1
Mycobacterium_tuberculosis_H37Rv 1 1
Mycobacterium_tuberculosis_CDC1551 1 1
Mycobacterium_bovis_AF2122/97 1 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1 1
Mycobacterium_bovis_BCG_str._Mexico 1 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1 1
Mycobacterium_gilvum_Spyr1 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 2 2
Corynebacterium_pseudotuberculosis_PAT10 1 1
Corynebacterium_glutamicum_MB001 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 1 1
Actinomyces_viscosus_C505 1 1
Chthonomonas_calidirosea_T49 1 1
Thermus_oshimai_JL-2 1 1
Thermus_thermophilus_JL-18 1 1
Thermus_thermophilus_SG0.5JP17-16 2 2
Thermus_thermophilus_HB8 1 1
Eubacterium_siraeum_V10Sc8a 1 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 2 2
Desulfosporosinus_meridiei_DSM_13257 2 2
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1 1
Desulfitobacterium_hafniense_DCB-2 1 1
Desulfotomaculum_gibsoniae_DSM_7213 1 1
Clostridium_saccharobutylicum_DSM_13864 3 3
Clostridium_autoethanogenum_DSM_10061 1 1
Clostridium_kluyveri_NBRC_12016 1 1
Clostridium_pasteurianum_BC1 1 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_BKT015925 1 1
Clostridium_botulinum_F_str._230613 2 2
Clostridium_botulinum_F_str._Langeland 2 2
Clostridium_botulinum_B1_str._Okra 3 2
Clostridium_botulinum_Ba4_str._657 5 3
Clostridium_botulinum_A2_str._Kyoto 5 3
Clostridium_botulinum_A3_str._Loch_Maree 3 2
Clostridium_botulinum_A_str._Hall 3 2
Clostridium_botulinum_A_str._ATCC_19397 3 2
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 1 1
Carnobacterium_maltaromaticum_LMA28 1 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 1 1
Lactobacillus_casei_LOCK919 1 1
Lactobacillus_casei_W56 1 1
Lactobacillus_casei_LC2W 1 1
Lactobacillus_casei_BD-II 1 1
Lactobacillus_casei_BL23 1 1
Lactobacillus_casei_str._Zhang 1 1
Lactobacillus_plantarum_16 1 1
Lactobacillus_plantarum_ZJ316 1 1
Lactobacillus_helveticus_R0052 2 2
Lactobacillus_helveticus_H10 1 1
Lactobacillus_helveticus_CNRZ32 2 2
Lactobacillus_brevis_KB290 1 1
Lactobacillus_acidophilus_La-14 1 1
Lactobacillus_acidophilus_NCFM 1 1
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 1 1
Exiguobacterium_antarcticum_B7 1 1
Paenibacillus_mucilaginosus_KNP414 4 4
Paenibacillus_mucilaginosus_K02 4 4
Geobacillus_sp._Y412MC52 1 1
Geobacillus_sp._Y412MC61 1 1
Bacillus_subtilis_PY79 1 1
Bacillus_subtilis_QB928 1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1 1
Bacillus_thuringiensis_HD-789 1 1
Salinibacter_ruber_DSM_13855 1 1
Rhodothermus_marinus_SG0.5JP17-172 3 3
Echinicola_vietnamensis_DSM_17526 4 4
Emticicia_oligotrophica_DSM_17448 3 3
Alistipes_shahii_WAL_8301 1 1
Bacteroides_fragilis_638R 8 8
Bacteroides_fragilis_NCTC_9343 5 5
Nonlabens_dokdonensis_DSW-6 1 1
Psychroflexus_torquis_ATCC_700755 1 1
Riemerella_anatipestifer_RA-CH-2 1 1
Riemerella_anatipestifer_RA-GD 1 1
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Singulisphaera_acidiphila_DSM_18658 2 2
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1 1
Leptospira_interrogans_serovar_Lai_str._56601 1 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 5 4
Brachyspira_pilosicoli_WesB 1 1
Brachyspira_pilosicoli_B2904 1 1
Brachyspira_pilosicoli_P43/6/78 1 1
Borrelia_miyamotoi_LB-2001 1 1
Treponema_pedis_str._T_A4 1 1
Treponema_pallidum_str._Fribourg-Blanc 1 1
Treponema_pallidum_subsp._pertenue_str._Gauthier 1 1
Treponema_pallidum_subsp._pertenue_str._CDC2 1 1
Treponema_pallidum_subsp._pertenue_str._SamoaD 1 1
Treponema_pallidum_subsp._pallidum_str._Mexico_A 1 1
Treponema_pallidum_subsp._pallidum_str._Chicago 1 1
Treponema_pallidum_subsp._pallidum_DAL-1 1 1
Treponema_pallidum_subsp._pallidum_str._Nichols 1 1
Leptospirillum_ferriphilum_ML-04 2 2
Bdellovibrio_bacteriovorus_str._Tiberius 4 2
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 1 1
Campylobacter_jejuni_RM1221 1 1
Campylobacter_jejuni_subsp._jejuni_00-2544 1 1
Campylobacter_jejuni_subsp._jejuni_00-2538 1 1
Campylobacter_jejuni_subsp._jejuni_00-2426 1 1
Campylobacter_jejuni_subsp._jejuni_00-2425 1 1
Campylobacter_jejuni_subsp._jejuni_PT14 1 1
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 1 1
Campylobacter_jejuni_subsp._jejuni_S3 1 1
Campylobacter_jejuni_subsp._jejuni_M1 1 1
Campylobacter_jejuni_subsp._jejuni_IA3902 1 1
Campylobacter_jejuni_subsp._jejuni_81116 1 1
Campylobacter_jejuni_subsp._jejuni_81-176 1 1
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 1 1
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 1 1
Desulfocapsa_sulfexigens_DSM_10523 4 4
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Sorangium_cellulosum_So0157-2 15 13
Anaeromyxobacter_sp._K 5 4
Anaeromyxobacter_dehalogenans_2CP-C 2 2
Myxococcus_stipitatus_DSM_14675 5 5
Burkholderia_sp._KJ006 1 1
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_pseudomallei_NCTC_13179 2 2
Burkholderia_pseudomallei_BPC006 2 2
Burkholderia_pseudomallei_1026b 3 3
Burkholderia_pseudomallei_MSHR346 1 1
Burkholderia_pseudomallei_668 1 1
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_mallei_NCTC_10229 1 1
Burkholderia_mallei_NCTC_10247 1 1
Burkholderia_mallei_ATCC_23344 1 1
Burkholderia_lata 1 1
Variovorax_paradoxus_B4 1 1
Variovorax_paradoxus_EPS 1 1
Taylorella_equigenitalis_ATCC_35865 1 1
Nitrosomonas_sp._AL212 1 1
Sulfuricella_denitrificans_skB26 1 1
Phaeobacter_gallaeciensis_DSM_26640 1 1
Paracoccus_aminophilus_JCM_7686 1 1
Micavibrio_aeruginosavorus_EPB 1 1
Candidatus_Pelagibacter_ubique_HTCC1062 1 1
Ehrlichia_ruminantium_str._Welgevonden 1 1
Ehrlichia_ruminantium_str._Welgevonden 1 1
Methylobacterium_extorquens_DM4 1 1
Sinorhizobium_fredii_USDA_257 2 2
Rhizobium_tropici_CIAT_899 3 2
Bradyrhizobium_sp._BTAi1 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Aggregatibacter_actinomycetemcomitans_ANH9381 1 1
Aggregatibacter_actinomycetemcomitans_D11S-1 1 1
Vibrio_fischeri_ES114 1 1
Vibrio_nigripulchritudo_VibrioScope 3 3
Glaciecola_psychrophila_170 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 2 2
Alteromonas_macleodii_str._'English_Channel_615' 1 1
Alteromonas_macleodii_str._'English_Channel_673' 2 2
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 2 2
Alteromonas_macleodii_str._'Black_Sea_11' 2 2
Alteromonas_macleodii_ATCC_27126 2 2
Alcanivorax_dieselolei_B5 1 1
Thalassolituus_oleivorans_MIL-1 3 3
Xanthomonas_oryzae_pv._oryzicola_BLS256 1 1
Serratia_marcescens_FGI94 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_IAI39 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_B_str._REL606 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 2 2
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_DOT-T1E 1 1
Pseudomonas_putida_S16 1 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_W619 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 1 1
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_mendocina_NK-01 1 1
Acinetobacter_baumannii_TYTH-1 2 2
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Methanomethylovorans_hollandica_DSM_15978 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 4 2
Thermococcus_sp._AM4 1 1
Thermococcus_litoralis_DSM_5473 1 1
Pyrococcus_sp._NA2 1 1
Pyrococcus_furiosus_DSM_3638 2 2

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   48 15
Pan_troglodytes_69_2.1.4   (Chimpanzee)   49 16
Gorilla_gorilla_69_3.1   (Western gorilla)   38 14
Pongo_abelii_69_2   (Sumatran orangutan)   40 13
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   41 15
Macaca_mulatta_69_1   (Rhesus monkey)   45 13
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   45 14
Otolemur_garnettii_69_3   (Small-eared galago)   42 15
Microcebus_murinus_69_1   (Gray mouse lemur)   44 15
Rattus_norvegicus_69_3.4   (Norway rat)   40 17
Mus_musculus_69_38   (House mouse)   47 14
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   46 14
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   36 13
Cavia_porcellus_69_3   (Domestic guinea pig)   40 15
Oryctolagus_cuniculus_69_2   (Rabbit)   40 14
Ochotona_princeps_69   (American pika)   46 14
Tupaia_belangeri_69   (Northern tree shrew)   44 14
Sus_scrofa_69_10.2   (Pig)   29 18
Bos_taurus_69_3.1   (Cattle)   39 13
Vicugna_pacos_69_1   (Alpaca)   30 9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   47 14
Mustela_putorius_furo_69_1.0   (Domestic ferret)   48 16
Ailuropoda_melanoleuca_69_1   (Giant panda)   45 15
Canis_familiaris_69_3.1   (Dog)   50 17
Felis_catus_69   (Domestic cat)   38 14
Equus_caballus_69_2   (Horse)   48 19
Myotis_lucifugus_69_2.0   (Little brown bat)   46 16
Pteropus_vampyrus_69_1   (Large flying fox)   46 14
Sorex_araneus_69_1   (European shrew)   30 10
Erinaceus_europaeus_69   (Western European hedgehog)   37 11
Procavia_capensis_69_1   (Cape rock hyrax)   46 13
Loxodonta_africana_69_3   (African savanna elephant)   46 14
Echinops_telfairi_69   (Small Madagascar hedgehog)   40 14
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   47 15
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   32 12
Macropus_eugenii_69_1.0   (Tammar wallaby)   48 15
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   39 14
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   43 16
Ornithorhynchus_anatinus_69_5   (Platypus)   43 21
Petromyzon_marinus_69_7.0   (Sea lamprey)   28 11
Meleagris_gallopavo_69_2   (Turkey)   43 15
Gallus_gallus_69_2   (Chicken)   41 15
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   49 16
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   43 16
Anolis_carolinensis_69_2.0   (Green anole)   47 16
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   42 17
Latimeria_chalumnae_69_1   (Coelacanth)   47 19
Gadus_morhua_69_1   (Atlantic cod)   60 22
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   70 25
Takifugu_rubripes_69_4   (Torafugu)   63 19
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   67 25
Oryzias_latipes_69_1   (Japanese medaka)   60 21
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   69 27
Oreochromis_niloticus_69_1.0   (Nile tilapia)   69 24
Danio_rerio_69_9   (Zebrafish)   76 30
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   26 14
Ciona_intestinalis_69   (Vase tunicate)   26 22
Drosophila_melanogaster_69_5   (Fruit fly)   34 11
Caenorhabditis_elegans_69_215   (Roundworm)   21 7
Arabidopsis_thaliana_10   (Thale cress)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   93 48
Homo_sapiens__(NCBI_version)   (Human)   62 27
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   47 14
Heliconius_numata__(Incomplete) 6 6
Loa_loa_v3.3_(Request)   (Eye worm)   15 5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   18 13
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   14 5
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Lotus_japonicus__(Early_assembly) 3 3
Malus_x_domestica_(Duplicate)   (Apple)   5 5
Ricinus_communis__(Early_assembly)   (Castor bean)   5 5
Nicotiana_benthamiana_0.4.4_(Early_draft) 4 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   4 4
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3 3
Phoenix_dactylifera__(Early_draft)   (Date palm)   1 1
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 24 24
NCBI_viral_sequences_(Viral) 14 12
PDB_chains_(SCOP_1.75)_(PDB) 3 3
TargetDB__(Targets) 67 65
STRING_v9.0.5_(STRING) 2664 1376
UniProt__viral_sequences_(Viral) 4 4
Uniprot_2018_03_genome 38459 25238
NCBI_2017_08_genome 53873 36667
Protozoadb_2010_08_(Protozoadb) 33 33
Protein_Data_Bank_(all_PDB_sequenc) 17 17
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 100 100

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