Domain combinations for TSP-1 type 1 repeat superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a TSP-1 type 1 repeat domain in that genome.

Complete genomes

Genome		Number	Proteins
Homo_sapiens_76_38	(Human)	611	154
Pan_troglodytes_76_2.1.4	(Chimpanzee)	244	62
Gorilla_gorilla_76_3.1	(Western gorilla)	316	84
Pongo_abelii_76_2	(Sumatran orangutan)	227	60
Nomascus_leucogenys_76_1.0	(Northern white-cheeked gibbon)	247	61
Papio_anubis_76	(Olive baboon)	275	67
Macaca_mulatta_76_1	(Rhesus monkey)	347	97
Callithrix_jacchus_76_3.2.1	(White-tufted-ear marmoset)	590	144
Otolemur_garnettii_76_3	(Small-eared galago)	254	67
Microcebus_murinus_76_1	(Gray mouse lemur)	186	57
Rattus_norvegicus_76_5.0	(Norway rat)	277	73
Mus_musculus_76_38	(House mouse)	545	129
Dipodomys_ordii_76_1	(Ord's kangaroo rat)	191	56
Ictidomys_tridecemlineatus_76_2	(Thirteen-lined ground squirrel)	307	68
Heterocephalus_glaber_v1.7-2	(Naked mole-rat)	241	62
Cavia_porcellus_76_3	(Domestic guinea pig)	276	65
Oryctolagus_cuniculus_76_2	(Rabbit)	262	59
Ochotona_princeps_76	(American pika)	204	59
Tupaia_belangeri_76	(Northern tree shrew)	151	54
Sus_scrofa_76_10.2	(Pig)	270	76
Bos_taurus_76_3.1	(Cattle)	315	70
Ovis_aries_76_3.1	(Sheep)	253	68
Vicugna_pacos_76_1	(Alpaca)	123	34
Tursiops_truncatus_76_1	(Bottlenose dolphin)	223	61
Mustela_putorius_furo_76_1.0	(Domestic ferret)	276	63
Ailuropoda_melanoleuca_76_1	(Giant panda)	308	77
Canis_familiaris_76_3.1	(Dog)	369	81
Felis_catus_76_6.2	(Domestic cat)	266	65
Equus_caballus_76_2	(Horse)	351	75
Myotis_lucifugus_76_2.0	(Little brown bat)	222	57
Pteropus_vampyrus_76_1	(Large flying fox)	218	60
Sorex_araneus_76_1	(European shrew)	127	40
Erinaceus_europaeus_76	(Western European hedgehog)	145	47
Procavia_capensis_76_1	(Cape rock hyrax)	192	62
Loxodonta_africana_76_3	(African savanna elephant)	297	87
Echinops_telfairi_76	(Small Madagascar hedgehog)	175	60
Dasypus_novemcinctus_76_2	(Nine-banded armadillo)	278	72
Choloepus_hoffmanni_76_1	(Hoffmann's two-fingered sloth)	127	37
Macropus_eugenii_76_1.0	(Tammar wallaby)	187	58
Sarcophilus_harrisii_76_7.0	(Tasmanian devil)	298	79
Monodelphis_domestica_76_5	(Gray short-tailed opossum)	259	64
Ornithorhynchus_anatinus_76_5	(Platypus)	237	77
Saccoglossus_kowalevskii_v3.0		431	141
Petromyzon_marinus_76_7.0	(Sea lamprey)	192	50
Meleagris_gallopavo_76_2	(Turkey)	261	75
Gallus_gallus_76_4	(Chicken)	273	64
Anas_platyrhynchos_76_1.0	(Mallard)	236	61
Taeniopygia_guttata_76_3.2.4	(Zebra finch)	256	67
Ficedula_albicollis_76_1.0	(Collared flycatcher)	236	61
Pelodiscus_sinensis_76_1.0	(Chinese soft-shelled turtle)	285	79
Anolis_carolinensis_76_2.0	(Green anole)	285	67
Xenopus_laevis_	(African clawed frog)	113	56
Xenopus_tropicalis_76_4.2	(Tropical clawed frog)	302	74
Latimeria_chalumnae_76_1	(Coelacanth)	302	94
Lepisosteus_oculatus_76	(Spotted gar)	422	94
Gadus_morhua_76_1	(Atlantic cod)	275	80
Tetraodon_nigroviridis_76_8	(Spotted green pufferfish)	317	90
Takifugu_rubripes_76_4	(Torafugu)	1009	288
Gasterosteus_aculeatus_76_1	(Three-spined stickleback)	355	102
Oryzias_latipes_76_1	(Japanese medaka)	332	91
Xiphophorus_maculatus_76_4.4.2	(Southern platyfish)	311	81
Poecilia_formosa_76	(Amazon molly)	317	83
Oreochromis_niloticus_76_1.0	(Nile tilapia)	460	112
Astyanax_mexicanus_76	(Mexican tetra)	298	88
Danio_rerio_76_9	(Zebrafish)	461	131
Oikopleura_dioica		363	99
Ciona_savignyi_76_2.0	(Pacific transparent sea squirt)	407	115
Ciona_intestinalis_76	(Vase tunicate)	356	104
Strongylocentrotus_purpuratus_v3.1	(Purple sea urchin)	260	75
Adineta_vaga		128	25
Octopus_bimaculoides_280		209	67
Crassostrea_gigas_22	(Pacific oyster)	404	118
Lottia_gigantea_	(Owl limpet)	171	61
Helobdella_robusta_		108	29
Capitella_sp._I_		195	90
Danaus_plexippus_OGS1.0	(Monarch butterfly)	60	29
Heliconius_melpomene_	(Postman butterfly)	45	23
Bombyx_mori_	(Domestic silkworm)	37	19
Nasonia_vitripennis_	(Jewel wasp)	56	16
Apis_mellifera_38.2d_(Not_maintained)	(Honey bee)	183	61
Harpegnathos_saltator_v3.3	(Jerdon's jumping ant)	62	19
Linepithema_humile_v1.1	(Argentine ant)	67	25
Pogonomyrmex_barbatus_v1.2	(Red harvester ant)	57	21
Solenopsis_invicta_v.2.2.3	(Red fire ant)	44	23
Acromyrmex_echinatior_v3.8	(Panamanian leafcutter ant)	64	20
Atta_cephalotes_v1.1		64	24
Camponotus_floridanus_v3.3	(Florida carpenter ant)	67	18
Lucilia_cuprina	(Australian sheep blowfly)	53	15
Drosophila_grimshawi_1.3		54	16
Drosophila_willistoni_1.3		54	15
Drosophila_pseudoobscura_2.13		52	15
Drosophila_persimilis_1.3		48	15
Drosophila_suzukii		50	14
Drosophila_yakuba_1.3		51	16
Drosophila_simulans_1.3		49	16
Drosophila_sechellia_1.3		47	13
Drosophila_melanogaster_76_5	(Fruit fly)	130	28
Drosophila_erecta_1.3		52	16
Drosophila_ananassae_1.3		55	17
Drosophila_virilis_1.2		49	15
Drosophila_mojavensis_1.3		49	14
Megaselia_scalaris_22		14	7
Aedes_aegypti_55_(Not_maintained)	(Yellow fever mosquito)	48	13
Culex_pipiens_quinquefasciatus_	(Southern house mosquito)	56	20
Anopheles_darlingi_22	(American malaria mosquito)	34	15
Anopheles_gambiae_49_3j	(African malaria mosquito)	42	14
Tribolium_castaneum_3.0	(Red flour beetle)	56	15
Pediculus_humanus_corporis__(Early_assembly)	(Human body louse)	52	16
Acyrthosiphon_pisum_	(Pea aphid)	44	8
Rhodnius_prolixus_22		40	14
Daphnia_pulex_	(Common water flea)	62	15
Strigamia_maritima_22		77	21
Sarcoptes_scabiei		31	8
Tetranychus_urticae_	(Two-spotted spider mite)	20	8
Ixodes_scapularis__(Preliminary)	(Black-legged tick)	42	10
Pristionchus_pacificus_		52	21
Meloidogyne_incognita_	(Southern root-knot nematode)	67	20
Meloidogyne_hapla_		40	10
Onchocerca_volvulus_22		72	22
Brugia_malayi_WS250	(Agent of lymphatic filariasis)	106	29
Caenorhabditis_japonica_		82	27
Caenorhabditis_brenneri_		129	38
Caenorhabditis_remanei_		96	33
Caenorhabditis_elegans_76_235	(Roundworm)	198	54
Caenorhabditis_briggsae_2		94	32
Trichinella_spiralis_22		74	25
Hymenolepis_microstoma_		28	13
Echinococcus_multilocularis_		31	15
Echinococcus_granulosus_		29	14
Taenia_solium_	(Pork tapeworm)	30	18
Schistosoma_mansoni_		31	15
Mnemiopsis_leidyi	(Sea walnut)	94	47
Thelohanellus_kitauei		4	3
Acropora_digitifera_v1.0		291	127
Nematostella_vectensis_1.0	(Starlet sea anemone)	295	125
Hydra_vulgaris		345	115
Amphimedon_queenslandica		44	18
Trichoplax_adhaerens_		35	9
Proterospongia_sp._ATCC_50818_		15	10
Monosiga_brevicollis_		6	3
Sphaeroforma_arctica_JP610_		22	12
Capsaspora_owczarzaki_ATCC_30864_		50	9
Dictyostelium_discoideum		2	1
Dictyostelium_purpureum_		5	4
Selaginella_moellendorffii_		6	2
Manihot_esculenta_v147	(Cassava)	1	1
Aquilegia_coerulea_v195		3	3
Oryza_barthii_22	(African wild rice)	1	1
Oryza_meridionalis_22		2	2
Oryza_glumaepatula_22		1	1
Oryza_glaberrima	(African rice)	1	1
Oryza_punctata_22		1	1
Oryza_nivara_22		1	1
Oryza_brachyantha_22	(Malo sina)	1	1
Oryza_sativa_ssp._japonica_5.0	(Japanese rice)	2	2
Oryza_sativa_v193	(Rice)	2	2
Panicum_virgatum_v202	(Switchgrass)	1	1
Setaria_italica_v164	(Foxtail millet)	1	1
Zea_mays_subsp._mays_	(Maize)	3	3
Zea_mays_v181	(Maize)	3	3
Sorghum_bicolor_	(Sorghum)	1	1
Musa_balbisiana	(Balbis banana)	1	1
Musa_acuminata_22	(Wild Malaysian banana)	2	2
Amborella_trichopoda_22		1	1
Physcomitrella_patens		1	1
Coccomyxa_subellipsoidea_sp._C-169_v2		8	3
Asterochloris_sp._Cgr/DA1pho_v1.0		7	3
Chlorella_variabilis_sp._NC64A_		10	3
Chlorella_vulgaris_		5	2
Ostreococcus_sp._RCC809_		8	5
Ostreococcus_lucimarinus_CCE9901_		1	1
Ostreococcus_tauri_		2	2
Bathycoccus_prasinos_		10	4
Micromonas_sp._RCC299_		4	2
Micromonas_pusilla_CCMP1545_v3.0		8	4
Thecamonas_trahens_ATCC_50062_		4	1
Bigelowiella_natans_CCMP2755_22		14	7
Ectocarpus_siliculosus		1	1
Pythium_iwayamai_DAOM_BR242034_22		31	4
Pythium_arrhenomanes_ATCC_12531_22		1	1
Pythium_ultimum_v1.7-2		46	5
Pythium_aphanidermatum_DAOM_BR444_22		42	3
Pythium_irregulare_DAOM_BR486_22		36	3
Pythium_vexans_DAOM_BR484_22		28	1
Phytophthora_ramorum_1.1	(Sudden oak death agent)	40	3
Phytophthora_sojae_1.1		79	7
Phytophthora_infestans_T30-4_		25	2
Phytophthora_capsici_		24	1
Thalassiosira_pseudonana_CCMP1335		1	1
Perkinsus_marinus_ATCC_50983_		2	2
Cryptosporidium_hominis		17	7
Cryptosporidium_muris		31	10
Cryptosporidium_parvum_Iowa_II		30	10
Neospora_caninum		30	8
Toxoplasma_gondii_VEG		24	6
Toxoplasma_gondii_ME49		24	6
Toxoplasma_gondii_GT1		25	6
Babesia_bovis_T2Bo_		8	8
Theileria_parva__		4	4
Theileria_annulata		4	4
Plasmodium_falciparum_3D7_		10	8
Plasmodium_vivax_SaI-1_7.0		11	9
Plasmodium_knowlesi_strain_H_		7	7
Plasmodium_yoelii_ssp._yoelii_1_		10	7
Plasmodium_chabaudi_		9	6
Plasmodium_berghei_ANKA_		10	7
Symbiodinium_minutum_clade_B1_v1.2		473	75
Guillardia_theta_CCMP2712_v1.0_		14	5
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)'		1	1
Bdellovibrio_bacteriovorus_HD100		1	1
Desulfatibacillum_alkenivorans_AK-01		7	1

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Strains

Genome		Number	Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)	(Tropical clawed frog)	283	84
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)	(Fruit fly)	122	28
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)	(African malaria mosquito)	55	17
Ascaris_suum_Victoria/Ghent_	(Pig roundworm)	77	23
Caenorhabditis_elegans_WormBase_WS218__(WormBase)	(Roundworm)	140	44
Oryza_sativa_ssp._Indica_(Subspecies)	(Long-grained rice)	1	1
Neospora_caninum_Nc-Liverpool_6.2		30	8
Plasmodium_falciparum_HB3_		10	8
Plasmodium_falciparum_Dd2_		8	6
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)'		1	1
Bdellovibrio_exovorus_JSS		5	3
Bdellovibrio_bacteriovorus_str._Tiberius		1	1

Longest transcript per gene

Genome		Number	Proteins
Homo_sapiens_69_37	(Human)	272	67
Pan_troglodytes_69_2.1.4	(Chimpanzee)	233	59
Gorilla_gorilla_69_3.1	(Western gorilla)	253	63
Pongo_abelii_69_2	(Sumatran orangutan)	227	60
Nomascus_leucogenys_69_1.0	(Northern white-cheeked gibbon)	243	62
Macaca_mulatta_69_1	(Rhesus monkey)	236	63
Callithrix_jacchus_69_3.2.1	(White-tufted-ear marmoset)	270	64
Otolemur_garnettii_69_3	(Small-eared galago)	252	66
Microcebus_murinus_69_1	(Gray mouse lemur)	186	57
Rattus_norvegicus_69_3.4	(Norway rat)	243	58
Mus_musculus_69_38	(House mouse)	286	64
Dipodomys_ordii_69_1	(Ord's kangaroo rat)	191	56
Ictidomys_tridecemlineatus_69_2	(Thirteen-lined ground squirrel)	244	62
Cavia_porcellus_69_3	(Domestic guinea pig)	260	60
Oryctolagus_cuniculus_69_2	(Rabbit)	257	57
Ochotona_princeps_69	(American pika)	204	59
Tupaia_belangeri_69	(Northern tree shrew)	151	54
Sus_scrofa_69_10.2	(Pig)	213	64
Bos_taurus_69_3.1	(Cattle)	275	62
Vicugna_pacos_69_1	(Alpaca)	123	34
Tursiops_truncatus_69_1	(Bottlenose dolphin)	223	61
Mustela_putorius_furo_69_1.0	(Domestic ferret)	276	63
Ailuropoda_melanoleuca_69_1	(Giant panda)	270	67
Canis_familiaris_69_3.1	(Dog)	258	60
Felis_catus_69	(Domestic cat)	155	52
Equus_caballus_69_2	(Horse)	255	61
Myotis_lucifugus_69_2.0	(Little brown bat)	218	56
Pteropus_vampyrus_69_1	(Large flying fox)	218	60
Sorex_araneus_69_1	(European shrew)	127	40
Erinaceus_europaeus_69	(Western European hedgehog)	145	47
Procavia_capensis_69_1	(Cape rock hyrax)	192	62
Loxodonta_africana_69_3	(African savanna elephant)	221	64
Echinops_telfairi_69	(Small Madagascar hedgehog)	175	60
Dasypus_novemcinctus_69_2	(Nine-banded armadillo)	159	52
Choloepus_hoffmanni_69_1	(Hoffmann's two-fingered sloth)	127	37
Macropus_eugenii_69_1.0	(Tammar wallaby)	187	58
Sarcophilus_harrisii_69_7.0	(Tasmanian devil)	244	64
Monodelphis_domestica_69_5	(Gray short-tailed opossum)	252	61
Ornithorhynchus_anatinus_69_5	(Platypus)	207	69
Petromyzon_marinus_69_7.0	(Sea lamprey)	130	39
Meleagris_gallopavo_69_2	(Turkey)	238	67
Gallus_gallus_69_2	(Chicken)	240	63
Taeniopygia_guttata_69_3.2.4	(Zebra finch)	253	65
Pelodiscus_sinensis_69_1.0	(Chinese soft-shelled turtle)	243	64
Anolis_carolinensis_69_2.0	(Green anole)	264	66
Xenopus_tropicalis_69_4.2	(Tropical clawed frog)	274	66
Latimeria_chalumnae_69_1	(Coelacanth)	253	74
Gadus_morhua_69_1	(Atlantic cod)	263	74
Tetraodon_nigroviridis_69_8	(Spotted green pufferfish)	240	69
Takifugu_rubripes_69_4	(Torafugu)	284	74
Gasterosteus_aculeatus_69_1	(Three-spined stickleback)	307	79
Oryzias_latipes_69_1	(Japanese medaka)	267	69
Xiphophorus_maculatus_69_4.4.2	(Southern platyfish)	311	81
Oreochromis_niloticus_69_1.0	(Nile tilapia)	330	79
Danio_rerio_69_9	(Zebrafish)	332	90
Ciona_savignyi_69_2.0	(Pacific transparent sea squirt)	200	56
Ciona_intestinalis_69	(Vase tunicate)	333	99
Drosophila_melanogaster_69_5	(Fruit fly)	52	15
Caenorhabditis_elegans_69_215	(Roundworm)	102	34

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Others

Genome		Number	Proteins
Homo_sapiens_75_37_(old_version_GRC)	(Human)	633	165
Homo_sapiens__(NCBI_version)	(Human)	341	81
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)	(House mouse)	265	63
Heliconius_numata__(Incomplete)		1	1
Loa_loa_v3.3_(Request)	(Eye worm)	80	27
Wuchereria_bancrofti_v1.0_(Request)	(Agent of lymphatic filariasis)	77	39
Brugia_malayi_v1.0_(Duplicate)	(Agent of lymphatic filariasis)	66	19
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		107	107
PDB_chains_(SCOP_1.75)_(PDB)		2	1
Protein_Data_Bank_(all_PDB_sequenc)		122	87
Protozoadb_2010_08_(Protozoadb)		277	136
TargetDB__(Targets)		310	101
STRING_v9.0.5_(STRING)		9521	2746
Uniprot_2018_03_genome		78679	23035
NCBI_2017_08_genome		129968	31969

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