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Domain combinations for ssDNA viruses superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a ssDNA viruses domain in that genome.

Complete genomes
Genome Number Proteins

Rattus_norvegicus_76_5.0 (Norway rat) 1 1

Linepithema_humile_v1.1 (Argentine ant) 1 1

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 2 2

Rhodnius_prolixus_22 3 3

Ixodes_scapularis__(Preliminary) (Black-legged tick) 1 1

Heterobasidion_annosum_ 2 2

Pinus_taeda (Loblolly pine) 3 1

Picea_abies (Norway spruce) 1 1

Capsella_rubella_v183 1 1

Glycine_max_v109 (Soybean) 1 1

Fragaria_vesca_ (Wild strawberry) 2 2

Linum_usitatissimum_v200 (Flax) 1 1

Aquilegia_coerulea_v195 1 1

Triticum_aestivum_22 (Bread wheat) 1 1

Aegilops_tauschii_22 1 1

Brachypodium_distachyon_ (Stiff brome) 1 1

Oryza_barthii_22 (African wild rice) 1 1

Oryza_meridionalis_22 1 1

Oryza_glumaepatula_22 1 1

Oryza_nivara_22 1 1

Oryza_brachyantha_22 (Malo sina) 1 1

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 1 1

Oryza_sativa_v193 (Rice) 1 1

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 2 2

Panicum_virgatum_v202 (Switchgrass) 2 2

Setaria_italica_v164 (Foxtail millet) 1 1

Zea_mays_subsp._mays_ (Maize) 2 2

Zea_mays_v181 (Maize) 2 2

Sorghum_bicolor_ (Sorghum) 1 1

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Strains
Genome Number Proteins

Hordeum_vulgare_22 (Domesticated barley) 1 1

Oryza_sativa_ssp._Indica_(Subspecies) (Long-grained rice) 1 1

Chlamydophila_pneumoniae_AR39 1 1

Others
Genome Number Proteins

NCBI_plasmid_sequences_(Plasmids) 2 2

Uniprot_2018_03_genome 10058 10023

STRING_v9.0.5_(STRING) 7 7

PDB_chains_(SCOP_1.75)_(PDB) 20 20

NCBI_viral_sequences_(Viral) 142 142

Protein_Data_Bank_(all_PDB_sequenc) 879 879

SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 921 921

NCBI_2017_08_genome 1974 1953

UniProt__viral_sequences_(Viral) 2522 2522

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