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Domain combinations for Myosin rod fragments superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Myosin rod fragments domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   243 82
Pan_troglodytes_76_2.1.4   (Chimpanzee)   82 27
Gorilla_gorilla_76_3.1   (Western gorilla)   141 45
Pongo_abelii_76_2   (Sumatran orangutan)   86 27
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   77 26
Papio_anubis_76   (Olive baboon)   84 26
Macaca_mulatta_76_1   (Rhesus monkey)   137 49
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   130 44
Otolemur_garnettii_76_3   (Small-eared galago)   78 22
Microcebus_murinus_76_1   (Gray mouse lemur)   72 19
Rattus_norvegicus_76_5.0   (Norway rat)   84 27
Mus_musculus_76_38   (House mouse)   173 67
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   58 16
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   61 16
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   74 18
Cavia_porcellus_76_3   (Domestic guinea pig)   51 19
Oryctolagus_cuniculus_76_2   (Rabbit)   73 24
Ochotona_princeps_76   (American pika)   52 15
Tupaia_belangeri_76   (Northern tree shrew)   61 17
Sus_scrofa_76_10.2   (Pig)   84 31
Bos_taurus_76_3.1   (Cattle)   81 27
Ovis_aries_76_3.1   (Sheep)   91 30
Vicugna_pacos_76_1   (Alpaca)   39 11
Tursiops_truncatus_76_1   (Bottlenose dolphin)   66 20
Mustela_putorius_furo_76_1.0   (Domestic ferret)   62 26
Ailuropoda_melanoleuca_76_1   (Giant panda)   85 29
Canis_familiaris_76_3.1   (Dog)   94 30
Felis_catus_76_6.2   (Domestic cat)   92 25
Equus_caballus_76_2   (Horse)   143 37
Myotis_lucifugus_76_2.0   (Little brown bat)   72 24
Pteropus_vampyrus_76_1   (Large flying fox)   73 22
Sorex_araneus_76_1   (European shrew)   51 17
Erinaceus_europaeus_76   (Western European hedgehog)   57 18
Procavia_capensis_76_1   (Cape rock hyrax)   65 22
Loxodonta_africana_76_3   (African savanna elephant)   138 40
Echinops_telfairi_76   (Small Madagascar hedgehog)   50 20
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   106 37
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   40 12
Macropus_eugenii_76_1.0   (Tammar wallaby)   59 20
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   77 25
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   49 19
Ornithorhynchus_anatinus_76_5   (Platypus)   75 29
Saccoglossus_kowalevskii_v3.0 200 44
Petromyzon_marinus_76_7.0   (Sea lamprey)   35 15
Meleagris_gallopavo_76_2   (Turkey)   100 29
Gallus_gallus_76_4   (Chicken)   91 27
Anas_platyrhynchos_76_1.0   (Mallard)   63 20
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   83 25
Ficedula_albicollis_76_1.0   (Collared flycatcher)   92 28
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   77 25
Anolis_carolinensis_76_2.0   (Green anole)   73 23
Xenopus_laevis_   (African clawed frog)   123 57
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   123 41
Latimeria_chalumnae_76_1   (Coelacanth)   70 26
Lepisosteus_oculatus_76   (Spotted gar)   129 42
Gadus_morhua_76_1   (Atlantic cod)   128 36
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   185 55
Takifugu_rubripes_76_4   (Torafugu)   272 106
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   144 46
Oryzias_latipes_76_1   (Japanese medaka)   174 61
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   90 29
Poecilia_formosa_76   (Amazon molly)   113 27
Oreochromis_niloticus_76_1.0   (Nile tilapia)   146 50
Astyanax_mexicanus_76   (Mexican tetra)   100 27
Danio_rerio_76_9   (Zebrafish)   282 92
Oikopleura_dioica 70 18
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   178 50
Ciona_intestinalis_76   (Vase tunicate)   32 12
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   17 9
Adineta_vaga 94 29
Octopus_bimaculoides_280 37 24
Crassostrea_gigas_22   (Pacific oyster)   32 18
Lottia_gigantea_   (Owl limpet)   7 7
Helobdella_robusta_ 11 7
Capitella_sp._I_ 8 8
Danaus_plexippus_OGS1.0   (Monarch butterfly)   14 6
Heliconius_melpomene_   (Postman butterfly)   12 5
Bombyx_mori_   (Domestic silkworm)   14 6
Nasonia_vitripennis_   (Jewel wasp)   12 4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   47 17
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   16 7
Linepithema_humile_v1.1   (Argentine ant)   12 5
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   14 7
Solenopsis_invicta_v.2.2.3   (Red fire ant)   15 5
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   18 6
Atta_cephalotes_v1.1 13 9
Camponotus_floridanus_v3.3   (Florida carpenter ant)   14 5
Lucilia_cuprina   (Australian sheep blowfly)   15 5
Drosophila_grimshawi_1.3 14 5
Drosophila_willistoni_1.3 14 4
Drosophila_pseudoobscura_2.13 16 5
Drosophila_persimilis_1.3 11 5
Drosophila_suzukii 12 3
Drosophila_yakuba_1.3 18 8
Drosophila_simulans_1.3 8 4
Drosophila_sechellia_1.3 9 3
Drosophila_melanogaster_76_5   (Fruit fly)   150 34
Drosophila_erecta_1.3 12 3
Drosophila_ananassae_1.3 14 5
Drosophila_virilis_1.2 15 4
Drosophila_mojavensis_1.3 14 4
Megaselia_scalaris_22 7 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   32 9
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   36 18
Anopheles_darlingi_22   (American malaria mosquito)   14 7
Anopheles_gambiae_49_3j   (African malaria mosquito)   22 7
Tribolium_castaneum_3.0   (Red flour beetle)   18 8
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   18 6
Acyrthosiphon_pisum_   (Pea aphid)   25 5
Rhodnius_prolixus_22 14 4
Daphnia_pulex_   (Common water flea)   11 6
Strigamia_maritima_22 19 8
Sarcoptes_scabiei 17 7
Tetranychus_urticae_   (Two-spotted spider mite)   20 8
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8 3
Pristionchus_pacificus_ 39 11
Meloidogyne_incognita_   (Southern root-knot nematode)   26 7
Meloidogyne_hapla_ 4 2
Onchocerca_volvulus_22 32 10
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   42 15
Caenorhabditis_japonica_ 34 9
Caenorhabditis_brenneri_ 55 16
Caenorhabditis_remanei_ 37 12
Caenorhabditis_elegans_76_235   (Roundworm)   61 21
Caenorhabditis_briggsae_2 37 13
Trichinella_spiralis_22 20 7
Hymenolepis_microstoma_ 17 7
Echinococcus_multilocularis_ 15 5
Echinococcus_granulosus_ 17 7
Taenia_solium_   (Pork tapeworm)   13 3
Schistosoma_mansoni_ 46 14
Mnemiopsis_leidyi   (Sea walnut)   25 11
Thelohanellus_kitauei 7 4
Acropora_digitifera_v1.0 17 13
Nematostella_vectensis_1.0   (Starlet sea anemone)   16 9
Hydra_vulgaris 20 10
Amphimedon_queenslandica 27 14
Trichoplax_adhaerens_ 1 1
Proterospongia_sp._ATCC_50818_ 8 6
Monosiga_brevicollis_ 2 2
Sphaeroforma_arctica_JP610_ 9 4
Capsaspora_owczarzaki_ATCC_30864_ 12 5
Conidiobolus_coronatus_NRRL28638_v1.0 2 1
Mortierella_verticillata_NRRL_6337_ 8 4
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 2 2
Ustilago_maydis_ 1 1
Mixia_osmundae_IAM_14324_v1.0 1 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1 1
Rhodotorula_graminis_WP1_v1.0 1 1
Sphaerobolus_stellatus_v1.0 7 6
Piloderma_croceum_F_1598_v1.0 3 3
Coniophora_puteana 3 3
Hydnomerulius_pinastri_v2.0 2 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 3 3
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 2 2
Scleroderma_citrinum_Foug_A_v1.0 3 3
Coprinopsis_cinerea_okayama7_130_v3 6 6
Laccaria_bicolor_S238N-H82_ 2 1
Agaricus_bisporus_var._bisporus_ 3 3
Schizophyllum_commune_ 5 5
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 5 2
Punctularia_strigosozonata_v1.0 1 1
Sebacina_vermifera_MAFF_305830_v1.0 2 2
Fomitiporia_mediterranea_v1.0 5 3
Tulasnella_calospora_AL13/4D_v1.0 4 3
Fomitopsis_pinicolav1.0 3 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3 3
Phanerochaete_chrysosporium_RP-78_2.1 3 3
Dichomitus_squalens 2 2
Trametes_versicolor_v1.0 1 1
Tremella_mesenterica_   (Witches' butter)   1 1
Daldinia_eschscholzii_EC12_v1.0 2 2
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Magnaporthe_poae_ATCC_64411_22 6 6
Magnaporthe_grisea_70-15_ 3 2
Podospora_anserina_ 4 2
Sporotrichum_thermophile_ATCC_42464_ 4 2
Thielavia_terrestris_NRRL_8126_ 4 4
Chaetomium_globosum_CBS_148.51_ 7 3
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 5 2
Verticillium_albo-atrum_VaMs.102_ 2 1
Verticillium_dahliae_VdLs.17_ 2 1
Acremonium_alcalophilumv_1.0 4 2
Glomerella_graminicola_22 3 2
Fusarium_graminearum_ 3 2
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_reesei_1.2 2 2
Trichoderma_virens_Gv29-8_ 2 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 2
Trichoderma_harzianum_CBS_226.95_v1.0 2 2
Botrytis_cinerea_B05.10_ 3 3
Sclerotinia_sclerotiorum_ 2 2
Blumeria_graminis_22 1 1
Leptosphaeria_maculans_22 2 2
Setosphaeria_turcica_v1.0 2 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 3 3
Mycosphaerella_graminicola_IPO323_ 2 2
Zasmidium_cellare_ATCC_36951_v1.0 3 3
Septoria_musiva_v1.0 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 3 2
Coccidioides_posadasii_RMSCC_3488_ 5 4
Coccidioides_immitis_RS_ 5 3
Ajellomyces_dermatitidis_SLH14081_ 2 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3 2
Microsporum_canis_CBS_113480_ 3 3
Trichophyton_equinum_CBS_127.97_ 3 3
Trichophyton_verrucosum_HKI_0517_ 3 2
Arthroderma_benhamiae_CBS_112371_ 2 2
Trichophyton_tonsurans_CBS_112818_ 3 3
Trichophyton_rubrum_CBS_118892_ 2 2
Uncinocarpus_reesii_1704_ 4 3
Aspergillus_zonatus_v1.0 2 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 4 3
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 3 3
Aspergillus_fumigatus_Af293 5 4
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 2 2
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 2 2
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 5 4
Aspergillus_terreus_NIH2624_ 5 4
Aspergillus_tubingensis_v1.0 2 2
Aspergillus_wentii_v1.0 4 4
Aspergillus_oryzae_RIB40_ 5 3
Aspergillus_niger_22 6 5
Aspergillus_flavus_NRRL3357_ 5 3
Aspergillus_clavatus_NRRL_1_ 3 3
Penicillium_marneffei_ATCC_18224_ 4 2
Tuber_melanosporum_Mel28_22 3 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3 3
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 3
Candida_dubliniensis_CD36_ 1 1
Candida_albicans_SC5314 3 3
Candida_guilliermondii_ATCC_6260_ 4 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 1 1
Candida_lusitaniae_ATCC_42720_ 2 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 1 1
Candida_glabrata_CBS138 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Saccharomyces_mikatae_MIT 1 1
Saccharomyces_bayanus_MIT 1 1
Kluyveromyces_lactis 1 1
Schizosaccharomyces_octosporus_yFS286_ 2 1
Catenaria_anguillulae_PL171_v1.0 12 6
Allomyces_macrogynus_ATCC_38327_ 8 8
Spizellomyces_punctatus_DAOM_BR117_ 12 4
Dictyostelium_discoideum 14 3
Dictyostelium_purpureum_ 11 1
Entamoeba_dispar_1.2 9 5
Entamoeba_invadens_1.2 28 25
Entamoeba_histolytica_1 5 3
Selaginella_moellendorffii_ 5 5
Pinus_taeda   (Loblolly pine)   2 2
Picea_abies   (Norway spruce)   5 5
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2 2
Gossypium_raimondii_v221 17 17
Citrus_clementina_v165 2 2
Citrus_sinensis_v154   (Sweet orange)   3 3
Thellungiella_halophila_v173 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   6 6
Capsella_rubella_v183 4 4
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   6 6
Medicago_truncatula_   (Barrel medic)   7 7
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   1 1
Cucumis_sativus_v122   (Cucumber)   4 4
Fragaria_vesca_   (Wild strawberry)   5 5
Malus_domestica_v196   (Apple)   8 8
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   2 2
Manihot_esculenta_v147   (Cassava)   2 2
Populus_trichocarpa_v156   (Black cottonwood)   3 3
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Solanum_tuberosum_   (Potato)   3 3
Actinidia_chinensis_Hongyang_ 5 5
Aquilegia_coerulea_v195 2 2
Triticum_urartu_22 3 3
Triticum_aestivum_22   (Bread wheat)   10 10
Aegilops_tauschii_22 1 1
Brachypodium_distachyon_   (Stiff brome)   2 2
Oryza_barthii_22   (African wild rice)   2 2
Oryza_meridionalis_22 5 5
Oryza_glumaepatula_22 8 8
Oryza_glaberrima   (African rice)   12 12
Oryza_punctata_22 4 4
Oryza_nivara_22 4 4
Oryza_brachyantha_22   (Malo sina)   7 7
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   35 35
Oryza_sativa_v193   (Rice)   32 32
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3 3
Panicum_virgatum_v202   (Switchgrass)   6 6
Setaria_italica_v164   (Foxtail millet)   4 4
Zea_mays_subsp._mays_   (Maize)   5 5
Zea_mays_v181   (Maize)   6 6
Sorghum_bicolor_   (Sorghum)   5 4
Musa_balbisiana   (Balbis banana)   5 4
Musa_acuminata_22   (Wild Malaysian banana)   7 5
Amborella_trichopoda_22 5 5
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 2 2
Chlorella_vulgaris_ 2 2
Volvox_carteri_f._nagariensis_ 7 7
Volvox_carteri_v199 7 7
Chlamydomonas_reinhardtii_4.0 7 7
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_tauri_ 1 1
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Cyanidioschyzon_merolae_strain_10D_22 2 2
Cyanidioschyzon_merolae 2 2
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 5 3
Bigelowiella_natans_CCMP2755_22 1 1
Giardia_lamblia_2.3 3 3
Cyanophora_paradoxa_ 3 3
Leishmania_mexicana_2.4 15 3
Leishmania_major_strain_Friedlin_ 8 3
Leishmania_infantum_JPCM5_2.4 8 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 20 6
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_congolense_2.4 5 4
Trypanosoma_brucei_gambiense_v4.1 2 2
Trypanosoma_brucei_TREU927_v4.1 4 3
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 2 2
Pythium_arrhenomanes_ATCC_12531_22 2 2
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 2 2
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 3 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5 5
Phytophthora_sojae_1.1 3 3
Phytophthora_infestans_T30-4_ 1 1
Phytophthora_capsici_ 1 1
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 3 3
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 3 3
Paramecium_tetraurelia_ 11 10
Tetrahymena_thermophila_SB210_1_ 5 5
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 2 1
Theileria_annulata 3 3
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 6 6
Naegleria_gruberi_ 2 2
Trichomonas_vaginalis_ 28 23
Guillardia_theta_CCMP2712_v1.0_ 8 8
Emiliania_huxleyi_CCMP1516_ 1 1
Leptolyngbya_sp._PCC_7376 1 1
Acaryochloris_marina_MBIC11017 1 1
Thermosynechococcus_sp._NK55 1 1
Thermosynechococcus_elongatus_BP-1 1 1
Synechococcus_sp._PCC_7502 1 1
Microcoleus_sp._PCC_7113 1 1
Trichodesmium_erythraeum_IMS101 1 1
Gloeocapsa_sp._PCC_7428 1 1
Microcystis_aeruginosa_NIES-843 1 1
Mycoplasma_mycoides_subsp._capri_LC_str._95010 4 4
Eggerthella_lenta_DSM_2243 1 1
Coriobacterium_glomerans_PW2 1 1
Acidothermus_cellulolyticus_11B 1 1
Saccharomonospora_viridis_DSM_43017 1 1
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Thermomicrobium_roseum_DSM_5159 1 1
Chloroflexus_aggregans_DSM_9485 1 1
Marinithermus_hydrothermalis_DSM_14884 2 2
Thermus_sp._CCB_US3_UF1 2 2
Thermus_scotoductus_SA-01 2 2
Symbiobacterium_thermophilum_IAM_14863 1 1
Clostridium_cellulolyticum_H10 1 1
Sulfobacillus_acidophilus_DSM_10332 1 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 1 1
Acetobacterium_woodii_DSM_1030 1 1
Eubacterium_eligens_ATCC_27750 1 1
Filifactor_alocis_ATCC_35896 1 1
Roseburia_hominis_A2-183 1 1
Roseburia_intestinalis 1 1
Syntrophothermus_lipocalidus_DSM_12680 2 2
Clostridium_sp._BNL1100 1 1
Coprothermobacter_proteolyticus_DSM_5265 1 1
Thermoanaerobacter_tengcongensis_MB4 1 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1 1
Thermoanaerobacter_sp._X514 1 1
Thermoanaerobacter_italicus_Ab9 1 1
Thermoanaerobacter_wiegelii_Rt8.B1 2 2
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1 1
Acetohalobium_arabaticum_DSM_5501 2 2
Carnobacterium_sp._17-4 1 1
Enterococcus_hirae_ATCC_9790 2 2
Enterococcus_faecium_Aus0004 1 1
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 1 1
Lactobacillus_crispatus_ST1 1 1
Lactobacillus_johnsonii_FI9785 1 1
Lactobacillus_amylovorus_GRL1118 1 1
Lactobacillus_brevis_ATCC_367 1 1
Lactobacillus_acidophilus_30SC 1 1
Pediococcus_pentosaceus_ATCC_25745 1 1
Streptococcus_uberis_0140J 1 1
Streptococcus_agalactiae_A909 2 2
Oceanobacillus_iheyensis_HTE831 3 3
Geobacillus_thermoleovorans_CCB_US3_UF5 1 1
Bacillus_pseudofirmus_OF4 1 1
Bacillus_cellulosilyticus_DSM_2522 1 1
Staphylococcus_lugdunensis_HKU09-01 1 1
Staphylococcus_epidermidis_RP62A 1 1
Candidatus_Cloacamonas_acidaminovorans 1 1
Chlorobium_chlorochromatii_CaD3 1 1
Chlorobaculum_parvum_NCIB_8327 1 1
Chlorobium_tepidum_TLS 2 2
Flexibacter_litoralis_DSM_6794 1 1
Owenweeksia_hongkongensis_DSM_17368 1 1
Zobellia_galactanivorans 1 1
Waddlia_chondrophila_WSU_86-1044 1 1
Chlamydia_psittaci_01DC11 1 1
Pirellula_staleyi_DSM_6068 1 1
Thermanaerovibrio_acidaminovorans_DSM_6589 1 1
Petrotoga_mobilis_SJ95 1 1
Fervidobacterium_pennivorans_DSM_9078 1 1
Fervidobacterium_nodosum_Rt17-B1 1 1
Thermotoga_lettingae_TMO 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Granulicella_mallensis_MP5ACTX8 1 1
Terriglobus_saanensis_SP1PR4 2 2
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 2 2
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 1 1
Candidatus_Saccharimonas_aalborgensis 1 1
Acidithiobacillus_ferrivorans_SS3 1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1 1
Bacteriovorax_marinus_SJ 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Arcobacter_sp._L 1 1
Helicobacter_bizzozeronii_CIII-1 1 1
Desulfomonile_tiedjei_DSM_6799 2 2
Desulfohalobium_retbaense_DSM_5692 1 1
Desulfovibrio_alaskensis_G20 1 1
Haliangium_ochraceum_DSM_14365 1 1
Anaeromyxobacter_sp._Fw109-5 1 1
Dechlorosoma_suillum_PS 1 1
Ralstonia_pickettii_12D 1 1
Burkholderia_glumae_BGR1 1 1
Herminiimonas_arsenicoxydans 1 1
Janthinobacterium_sp._Marseille 1 1
Herbaspirillum_seropedicae_SmR1 1 1
Nitrosospira_multiformis_ATCC_25196 1 1
Ketogulonicigenium_vulgare_Y25 1 1
Rhodospirillum_photometricum_DSM_122 1 1
Azospirillum_lipoferum_4B 1 1
Azospirillum_brasilense_Sp245 1 1
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Xanthobacter_autotrophicus_Py2 1 1
Azorhizobium_caulinodans_ORS_571 1 1
Methylobacterium_sp._4-46 3 3
Methylobacterium_nodulans_ORS_2060 1 1
Parvibaculum_lavamentivorans_DS-1 1 1
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 1 1
Brucella_canis_ATCC_23365 1 1
Brucella_suis_ATCC_23445 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 1 1
Brucella_abortus_S19 1 1
Bradyrhizobium_japonicum_USDA_110 1 1
Oceanimonas_sp._GK1 1 1
Shewanella_loihica_PV-4 1 1
Pseudoalteromonas_sp._SM9913 1 1
Kangiella_koreensis_DSM_16069 1 1
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Allochromatium_vinosum_DSM_180 2 2
Nitrosococcus_oceani_ATCC_19707 1 1
Legionella_pneumophila_str._Corby 1 1
Escherichia_blattae_DSM_4481 1 1
Cronobacter_turicensis_z3032 1 1
Enterobacter_aerogenes_KCTC_2190 1 1
Enterobacter_sp._R4-368 1 1
Pseudomonas_sp._VLB120 1 1
Nanoarchaeum_equitans_Kin4-M 1 1
Acidilobus_saccharovorans_345-15 1 1
Pyrolobus_fumarii_1A 3 3
Desulfurococcus_mucosus_DSM_2162 1 1
Thermofilum_sp._1910b 1 1
Thermofilum_pendens_Hrk_5 2 2
Pyrobaculum_calidifontis_JCM_11548 3 2
Pyrobaculum_oguniense_TE7 2 2
Pyrobaculum_aerophilum_str._IM2 1 1
Thermoproteus_uzoniensis_768-20 1 1
Methanocella_conradii_HZ254 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanoculleus_bourgensis_MS2 1 1
Archaeoglobus_fulgidus_DSM_4304 1 1
Pyrococcus_abyssi_GE5 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Halopiger_xanaduensis_SH-6 1 1
Natrinema_sp._J7-2 1 1
Halogeometricum_borinquense_DSM_11551 1 1
Halorhabdus_utahensis_DSM_12940 1 1
Natronomonas_pharaonis_DSM_2160 1 1
Haloarcula_hispanica_ATCC_33960 1 1
Halalkalicoccus_jeotgali_B3 2 2
Halobacterium_salinarum_R1 1 1
Methanocaldococcus_sp._FS406-22 1 1
Methanocaldococcus_vulcanius_M7 1 1
Methanothermobacter_marburgensis_str._Marburg 1 1
Methanosphaera_stadtmanae_DSM_3091 1 1
Methanobrevibacter_sp._AbM4 1 1
Methanobrevibacter_ruminantium_M1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   149 51
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   126 29
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   83 18
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   64 20
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   37 11
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 2 2
Cryptococcus_neoformans_JEC21_ 2 2
Paracoccidioides_brasiliensis_Pb01_ 5 3
Paracoccidioides_brasiliensis_Pb03_ 3 2
Coccidioides_posadasii_str._Silveira_ 6 4
Coccidioides_immitis_RMSCC_3703_ 3 3
Coccidioides_immitis_RMSCC_2394_ 5 3
Coccidioides_immitis_H538.4_ 4 4
Ajellomyces_dermatitidis_ER-3_ 3 2
Histoplasma_capsulatum_H143 3 2
Histoplasma_capsulatum_H88 3 2
Histoplasma_capsulatum_G186AR 3 2
Aspergillus_fumigatus_A1163_ 5 4
Candida_albicans_WO-1_ 2 2
Batrachochytrium_dendrobatidis_JEL423_ 9 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1 1
Hordeum_vulgare_22   (Domesticated barley)   10 10
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5 5
Trypanosoma_brucei_Lister_427_v4.1 4 3
Neospora_caninum_Nc-Liverpool_6.2 1 1
Plasmodium_falciparum_HB3_ 1 1
Dactylococcopsis_salina_PCC_8305 1 1
Oscillatoria_nigro-viridis_PCC_7112 5 4
Oscillatoria_acuminata_PCC_6304 1 1
Cyanothece_sp._PCC_7822 2 1
Cyanothece_sp._PCC_7424 1 1
Cyanobacterium_aponinum_PCC_10605 1 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1 1
Stanieria_cyanosphaera_PCC_7437 1 1
Candidatus_Phytoplasma_australiense_Strawberry_lethal_yellows_phytoplasma_(CPA)_str._NZSb11 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1 1
Corynebacterium_diphtheriae_HC02 1 1
Thermus_oshimai_JL-2 1 1
Thermus_thermophilus_JL-18 1 1
Sulfobacillus_acidophilus_TPY 1 1
Roseburia_intestinalis_XB6B4 2 2
Clostridium_perfringens_str._13 1 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 1 1
Thermacetogenium_phaeum_DSM_12270 1 1
Thermoanaerobacter_sp._X513 1 1
Enterococcus_faecium_Aus0085 1 1
Enterococcus_faecium_NRRL_B-2354 1 1
Enterococcus_faecium_DO 2 2
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 1 1
Lactobacillus_johnsonii_N6.2 1 1
Lactobacillus_johnsonii_NCC_533 1 1
Lactobacillus_amylovorus_GRL_1112 1 1
Lactobacillus_brevis_KB290 1 1
Lactobacillus_acidophilus_La-14 1 1
Lactobacillus_acidophilus_NCFM 1 1
Pediococcus_pentosaceus_SL4 1 1
Lactococcus_lactis_subsp._lactis_KF147 1 1
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 2 2
Streptococcus_equi_subsp._zooepidemicus 1 1
Streptococcus_pyogenes_Alab49 1 1
Streptococcus_agalactiae_GD201008-001 1 1
Bacillus_coagulans_36D1 1 1
Staphylococcus_lugdunensis_N920143 1 1
Staphylococcus_epidermidis_ATCC_12228 1 1
Chlorobium_phaeobacteroides_BS1 1 1
Echinicola_vietnamensis_DSM_17526 1 1
Chlamydia_psittaci_WC 1 1
Chlamydia_psittaci_MN 1 1
Chlamydia_psittaci_84/55 1 1
Chlamydia_psittaci_08DC60 1 1
Chlamydia_psittaci_02DC15 1 1
Chlamydia_psittaci_C19/98 1 1
Chlamydia_psittaci_NJ1 1 1
Chlamydia_psittaci_CP3 1 1
Chlamydophila_psittaci_RD1 1 1
Chlamydophila_psittaci_6BC 1 1
Chlamydophila_psittaci_6BC 1 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Helicobacter_pylori_BM012S 1 1
Helicobacter_pylori_UM037 1 1
Helicobacter_pylori_PeCan18 1 1
Helicobacter_pylori_Puno135 2 2
Helicobacter_pylori_ELS37 1 1
Helicobacter_pylori_Sat464 1 1
Helicobacter_pylori_SJM180 1 1
Helicobacter_pylori_83 1 1
Helicobacter_pylori_Shi470 1 1
Helicobacter_pylori_F32 1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1 1
Sorangium_cellulosum_So0157-2 1 1
Ralstonia_pickettii_12J 1 1
Burkholderia_thailandensis_MSMB121 1 1
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 1 1
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Candidatus_Pelagibacter_ubique_HTCC1062 1 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 1 1
Brucella_ceti_TE10759-12 1 1
Brucella_canis_HSK_A52141 1 1
Brucella_suis_VBI22 1 1
Brucella_suis_1330 1 1
Brucella_suis_1330 1 1
Brucella_melitensis_NI 1 1
Brucella_melitensis_M5-90 1 1
Brucella_melitensis_M28 1 1
Brucella_abortus_A13334 1 1
Brucella_melitensis_biovar_Abortus_2308 1 1
Brucella_abortus_bv._1_str._9-941 1 1
Sinorhizobium_meliloti_GR4 1 1
Mannheimia_succiniciproducens_MBEL55E 1 1
Pasteurella_multocida_36950 1 1
Stenotrophomonas_maltophilia_JV3 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Thioalkalivibrio_nitratireducens_DSM_14787 1 1
Coxiella_burnetii_RSA_331 1 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1
Raoultella_ornithinolytica_B6 1 1
Salmonella_bongori_N268-08 1 1
Enterobacter_aerogenes_EA1509E 1 1
Pseudomonas_putida_HB3267 1 1
Sulfolobus_islandicus_REY15A 1 1
Methanolobus_psychrophilus_R15 1 1
Thermococcus_litoralis_DSM_5473 1 1
Halovivax_ruber_XH-70 1 1
Natrinema_pellirubrum_DSM_15624 2 1
Natronococcus_occultus_SP4 1 1
Natronomonas_moolapensis_8.8.11 1 1
Haloarcula_hispanica_N601 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   90 27
Pan_troglodytes_69_2.1.4   (Chimpanzee)   76 25
Gorilla_gorilla_69_3.1   (Western gorilla)   65 22
Pongo_abelii_69_2   (Sumatran orangutan)   72 23
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   65 22
Macaca_mulatta_69_1   (Rhesus monkey)   85 28
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   68 21
Otolemur_garnettii_69_3   (Small-eared galago)   72 21
Microcebus_murinus_69_1   (Gray mouse lemur)   72 19
Rattus_norvegicus_69_3.4   (Norway rat)   73 24
Mus_musculus_69_38   (House mouse)   84 27
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   58 16
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   61 16
Cavia_porcellus_69_3   (Domestic guinea pig)   49 18
Oryctolagus_cuniculus_69_2   (Rabbit)   68 21
Ochotona_princeps_69   (American pika)   52 15
Tupaia_belangeri_69   (Northern tree shrew)   61 17
Sus_scrofa_69_10.2   (Pig)   82 29
Bos_taurus_69_3.1   (Cattle)   80 26
Vicugna_pacos_69_1   (Alpaca)   39 11
Tursiops_truncatus_69_1   (Bottlenose dolphin)   66 20
Mustela_putorius_furo_69_1.0   (Domestic ferret)   62 26
Ailuropoda_melanoleuca_69_1   (Giant panda)   77 24
Canis_familiaris_69_3.1   (Dog)   72 20
Felis_catus_69   (Domestic cat)   64 18
Equus_caballus_69_2   (Horse)   72 21
Myotis_lucifugus_69_2.0   (Little brown bat)   72 24
Pteropus_vampyrus_69_1   (Large flying fox)   73 22
Sorex_araneus_69_1   (European shrew)   51 17
Erinaceus_europaeus_69   (Western European hedgehog)   57 18
Procavia_capensis_69_1   (Cape rock hyrax)   65 22
Loxodonta_africana_69_3   (African savanna elephant)   80 22
Echinops_telfairi_69   (Small Madagascar hedgehog)   50 20
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   48 14
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   40 12
Macropus_eugenii_69_1.0   (Tammar wallaby)   59 20
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   71 23
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   49 19
Ornithorhynchus_anatinus_69_5   (Platypus)   67 27
Petromyzon_marinus_69_7.0   (Sea lamprey)   35 15
Meleagris_gallopavo_69_2   (Turkey)   58 19
Gallus_gallus_69_2   (Chicken)   84 24
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   83 25
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   58 20
Anolis_carolinensis_69_2.0   (Green anole)   66 20
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   96 30
Latimeria_chalumnae_69_1   (Coelacanth)   64 21
Gadus_morhua_69_1   (Atlantic cod)   103 31
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   112 35
Takifugu_rubripes_69_4   (Torafugu)   85 33
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   117 35
Oryzias_latipes_69_1   (Japanese medaka)   129 47
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   90 29
Oreochromis_niloticus_69_1.0   (Nile tilapia)   107 34
Danio_rerio_69_9   (Zebrafish)   178 53
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   36 11
Ciona_intestinalis_69   (Vase tunicate)   32 12
Drosophila_melanogaster_69_5   (Fruit fly)   72 15
Caenorhabditis_elegans_69_215   (Roundworm)   35 9
Arabidopsis_thaliana_10   (Thale cress)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   204 75
Homo_sapiens__(NCBI_version)   (Human)   125 39
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   81 26
Heliconius_numata__(Incomplete) 6 6
Loa_loa_v3.3_(Request)   (Eye worm)   38 16
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   33 17
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   28 8
Moniliophthora_perniciosa_FA553__(Genome_survey) 5 5
Lotus_japonicus__(Early_assembly) 2 2
Malus_x_domestica_(Duplicate)   (Apple)   8 8
Nicotiana_benthamiana_0.4.4_(Early_draft) 6 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
Phoenix_dactylifera__(Early_draft)   (Date palm)   3 3
NCBI_plasmid_sequences_(Plasmids) 15 15
TargetDB__(Targets) 27 15
PDB_chains_(SCOP_1.75)_(PDB) 6 4
NCBI_viral_sequences_(Viral) 35 35
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 37 37
STRING_v9.0.5_(STRING) 2966 1178
Protein_Data_Bank_(all_PDB_sequenc) 89 41
Uniprot_2018_03_genome 34780 15049
NCBI_2017_08_genome 61601 25319
UniProt__viral_sequences_(Viral) 33 33
Protozoadb_2010_08_(Protozoadb) 153 108

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