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Enzyme Commission (EC): Acting on the aldehyde or oxo group of donors 
(show info)
Biomedical Ontology
Like Gene Ontology (GO), biomedical ontology such as phenotype ontology classifies and organizes gene-mutant/null phenotypic information from the very general at the top to more specific terms in the directed acyclic graph (DAG) by viewing an individual term as a node and its relations to parental terms (allowing for multiple parents) as directed edges. To navigate this hierarchy, we display all parental phenotypic terms to the current phenotypic term of interest ordered by their shortest distances to the current term. Also, only direct children phenotypic terms of the current phenotypic term are listed. Biomedical ontologies we have incorporated are as follows:
- Disease Ontology (DO) Ontology DO semantically integrates disease and medical vocabularies through extensive cross mapping of DO terms to MeSH, ICD, NCI’s thesaurus, SNOMED and OMIM.
- Human Phenotype (HP) Ontology HP captures phenotypic abnormalities that are described in OMIM, along with the corresponding disease-causing genes. It includes three complementary biological concepts: Mode_of_Inheritance (MI), ONset_and_clinical_course (ON), and Phenotypic_Abnormality (PA).
- Mouse Phenotype (MP) Ontology MP describes phenotypes of the mouse after a specific gene is genetically disrupted. Using it, Mouse Genome Informatics (MGI) provides high-coverate gene-level phenotypes for the mouse.
- Worm Phenotype (WP) Ontology WP classifies and organizes phenotype descriptions for C. elegans and other nematodes. Using it, WormBase provides primary resource for phenotype annotations for C. elegans.
- Yeast Phenotype (YP) Ontology Based on YP which is the major contributor to the ‘Ascomycete phenotype ontology’, Saccharomyces Genome Database (SGD) provides single mutant phenotypes for every gene in the yeast genome.
- Fly Phenotype (FP) Ontology FP refers to FlyBase controlled vocabulary. Specifically, a structured controlled vocabulary is used for the annotation of alleles (for their mutagen etc) in FlyBase.
- Fly Anatomy (FA) Ontology FA is a structured controlled vocabulary of the anatomy of Drosophila melanogaster, used for the description of phenotypes and where a gene is expressed.
- Zebrafish Anatomy (ZA) Ontology ZA displays anatomical terms of the zebrafish using standard anatomical nomenclature, together with affected genes.
- Xenopus Anatomy (XA) Ontology XA represents the lineage of tissues and the timing of development for frogs (Xenopus laevis and Xenopus tropicalis). It is used to annotate Xenopus gene expression patterns and mutant and morphant phenotypes.
- Arabidopsis Plant Ontology (AP) Ontology As a major contributor to Plant Ontology which describes plant anatomical and morphological structures (AN) and growth and developmental stages (DE), the Arabidopsis Information Resource (TAIR) provides arabidopsis plant ontology annotations for the model higher plant Arabidopsis thaliana.
- Enzyme Commission (EC) Ontology Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed.
- UniProtKB KeyWords (KW) Ontology Keywords in UniProtKB are controlled vocabulary, providing a summary of the entry content and are used to index UniProtKB/Swiss-Prot entries based on 10 categories (the category "Technical term" being excluded here). Each keyword is attributed manually to UniProtKB/Swiss-Prot entries and automatically to UniProtKB/TrEMBL entries (according to specific annotation rules).
- CTD Diseases (CD) Ontology CD is MEDIC disease vocabulary that is modified by CTD from the "Diseases" [C] branch of Medical Subject Headings (MeSH), combined with genetic disorders from the Online Mendelian Inheritance in OMIM database.
- CTD Chemicals (CC) Ontology CC is chemical vocabulary that is adapted by CTD from the "Chemicals and Drugs" category and Supplementary Concept Records of Medical Subject Headings (MeSH, a hierarchical vocabulary used to index articles for MEDLINE/PubMed).
Jump to [ Top · Hierarchy · Annotations ]
Root: EC Hierarchy (from IntEnz release 70)
Jump to [ Top · Hierarchy ]
Family( show details)
Highlighted in gray are those with FDR_all>0.001
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Branched-chain alpha-keto acid dehydrogenase PP module | 0 | DIRECT |
| ALDH-like | 0 | DIRECT |
| Aldehyde ferredoxin oxidoreductase, C-terminal domains | 0 | DIRECT |
| Carbon monoxide dehydrogenase | 0 | DIRECT |
| Aldehyde ferredoxin oxidoreductase, N-terminal domain | 0 | DIRECT |
| PutA pre-N-terminal region-like | 0 | DIRECT |
| Aminoacid dehydrogenase-like, C-terminal domain | 0 | DIRECT |
| Glutamyl tRNA-reductase dimerization domain | 0 | DIRECT |
| Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain | 0 | DIRECT |
| PFOR Pyr module | 0 | DIRECT |
| Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain | 0 | DIRECT |
| Branched-chain alpha-keto acid dehydrogenase Pyr module | 0 | DIRECT |
| Glutamyl tRNA-reductase catalytic, N-terminal domain | 0 | DIRECT |
| GMC oxidoreductases | 0 | DIRECT |
| GAPDH-like | 0 | DIRECT |
| N-terminal domain of bifunctional PutA protein | 0 | DIRECT |
| Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0 | DIRECT |
| CO dehydrogenase flavoprotein N-terminal domain-like | 3.693e-16 | DIRECT |
| Molybdenum cofactor-binding domain | 3.693e-16 | DIRECT |
| CO dehydrogenase ISP C-domain like | 9.189e-16 | DIRECT |
| CO dehydrogenase molybdoprotein N-domain-like | 9.189e-16 | DIRECT |
| PFOR PP module | 0.000000000000003816 | DIRECT |
| CO dehydrogenase flavoprotein C-terminal domain-like | 0.000000000000009037 | DIRECT |
| Pyruvate-ferredoxin oxidoreductase, PFOR, domain II | 0.0000000000001987 | DIRECT |
| FAD-linked reductases, N-terminal domain | 0.000000001285 | DIRECT |
| Transketolase C-terminal domain-like | 0.000000008276 | DIRECT |
| TK-like Pyr module | 0.000001064 | DIRECT |
| Peptidyl carrier domain | 0.000008118 | DIRECT |
| CAT-like | 0.00001372 | DIRECT |
| 2Fe-2S ferredoxin domains from multidomain proteins | 0.00003052 | DIRECT |
| Galactose oxidase, central domain | 0.0002646 | DIRECT |
| Germin/Seed storage 7S protein | 0.0002646 | DIRECT |
| Alpha subunit of glutamate synthase, C-terminal domain | 0.002231 | INHERITED FROM: Formylmethanofuran dehydrogenase || With an iron-sulfur protein as acceptor |
| TK-like PP module | 0.003106 | INHERITED FROM: Pyruvate dehydrogenase (acetyl-transferring) || With a disulfide as acceptor |
| Proline dehydrohenase domain of bifunctional PutA protein | 0.1755 | INHERITED FROM: L-glutamate gamma-semialdehyde dehydrogenase || With NAD(+) or NADP(+) as acceptor |
| PyrH-like | 0.816 | INHERITED FROM: Glutamate-5-semialdehyde dehydrogenase |
| Acetyl-CoA synthetase-like | 0.9126 | INHERITED FROM: L-aminoadipate-semialdehyde dehydrogenase || L-2-aminoadipate reductase |
| Tyrosine-dependent oxidoreductases | 1 | INHERITED FROM: Cinnamoyl-CoA reductase |
| SCOP term |
FDR (all) |
Annotation (direct or inherited) |
| Branched-chain alpha-keto acid dehydrogenase PP module | 0 | Direct |
| ALDH-like | 0 | Direct |
| Aldehyde ferredoxin oxidoreductase, C-terminal domains | 0 | Direct |
| Carbon monoxide dehydrogenase | 0 | Direct |
| Aldehyde ferredoxin oxidoreductase, N-terminal domain | 0 | Direct |
| PutA pre-N-terminal region-like | 0 | Direct |
| Aminoacid dehydrogenase-like, C-terminal domain | 0 | Direct |
| Glutamyl tRNA-reductase dimerization domain | 0 | Direct |
| Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain | 0 | Direct |
| PFOR Pyr module | 0 | Direct |
| Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain | 0 | Direct |
| Branched-chain alpha-keto acid dehydrogenase Pyr module | 0 | Direct |
| Glutamyl tRNA-reductase catalytic, N-terminal domain | 0 | Direct |
| GMC oxidoreductases | 0 | Direct |
| GAPDH-like | 0 | Direct |
| N-terminal domain of bifunctional PutA protein | 0 | Direct |
| Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0 | Direct |
| CO dehydrogenase flavoprotein N-terminal domain-like | 3.693e-16 | Direct |
| Molybdenum cofactor-binding domain | 3.693e-16 | Direct |
| CO dehydrogenase ISP C-domain like | 9.189e-16 | Direct |
| CO dehydrogenase molybdoprotein N-domain-like | 9.189e-16 | Direct |
| PFOR PP module | 0.000000000000003816 | Direct |
| CO dehydrogenase flavoprotein C-terminal domain-like | 0.000000000000009037 | Direct |
| Pyruvate-ferredoxin oxidoreductase, PFOR, domain II | 0.0000000000001987 | Direct |
| FAD-linked reductases, N-terminal domain | 0.000000001285 | Direct |
| Transketolase C-terminal domain-like | 0.000000008276 | Direct |
| TK-like Pyr module | 0.000001064 | Direct |
| Peptidyl carrier domain | 0.000008118 | Direct |
| CAT-like | 0.00001372 | Direct |
| 2Fe-2S ferredoxin domains from multidomain proteins | 0.00003052 | Direct |
| Galactose oxidase, central domain | 0.0002646 | Direct |
| Germin/Seed storage 7S protein | 0.0002646 | Direct |
| Alpha subunit of glutamate synthase, C-terminal domain | 0.002231 | Inherited |
| TK-like PP module | 0.003106 | Inherited |
| Proline dehydrohenase domain of bifunctional PutA protein | 0.1755 | Inherited |
| PyrH-like | 0.816 | Inherited |
| Acetyl-CoA synthetase-like | 0.9126 | Inherited |
| Tyrosine-dependent oxidoreductases | 1 | Inherited |
LINKTO: Domain2BO Download and Domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Single)( show details)
Highlighted in gray are those with FDR>0.001
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Duplex) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
52518,52518
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52518 - Thiamin diphosphate-binding fold (THDP-binding) | 0 | DIRECT |
51735,69075
51735 - NAD(P)-binding Rossmann-fold domains
69075 - Glutamyl tRNA-reductase dimerization domain | 0 | DIRECT |
81935,51730
81935 - N-terminal domain of bifunctional PutA protein
51730 - FAD-linked oxidoreductase | 0 | DIRECT |
52518,52922
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52922 - TK C-terminal domain-like | 0 | DIRECT |
69336,50692
69336 - Alpha subunit of glutamate synthase, C-terminal domain
50692 - ADC-like | 0 | DIRECT |
53323,54862
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
54862 - 4Fe-4S ferredoxins | 0 | DIRECT |
56228,48310
56228 - Aldehyde ferredoxin oxidoreductase, N-terminal domain
48310 - Aldehyde ferredoxin oxidoreductase, C-terminal domains | 0 | DIRECT |
52518,54862
52518 - Thiamin diphosphate-binding fold (THDP-binding)
54862 - 4Fe-4S ferredoxins | 0 | DIRECT |
47598,81935
47598 - Ribbon-helix-helix
81935 - N-terminal domain of bifunctional PutA protein | 0 | DIRECT |
51730,53720
51730 - FAD-linked oxidoreductase
53720 - ALDH-like | 0 | DIRECT |
56821,46548
56821 - Prismane protein-like
46548 - alpha-helical ferredoxin | 0 | DIRECT |
54862,52518
54862 - 4Fe-4S ferredoxins
52518 - Thiamin diphosphate-binding fold (THDP-binding) | 0 | DIRECT |
69742,51735
69742 - Glutamyl tRNA-reductase catalytic, N-terminal domain
51735 - NAD(P)-binding Rossmann-fold domains | 0 | DIRECT |
54292,47741
54292 - 2Fe-2S ferredoxin-like
47741 - CO dehydrogenase ISP C-domain like | 0 | DIRECT |
53633,53720
53633 - Carbamate kinase-like
53720 - ALDH-like | 0 | DIRECT |
51735,55347
51735 - NAD(P)-binding Rossmann-fold domains
55347 - Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0 | DIRECT |
53720,56796
53720 - ALDH-like
56796 - Dehydroquinate synthase-like | 0 | DIRECT |
53323,52518
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
52518 - Thiamin diphosphate-binding fold (THDP-binding) | 0 | DIRECT |
54665,56003
54665 - CO dehydrogenase molybdoprotein N-domain-like
56003 - Molybdenum cofactor-binding domain | 1.78e-16 | DIRECT |
55447,54665
55447 - CO dehydrogenase flavoprotein C-terminal domain-like
54665 - CO dehydrogenase molybdoprotein N-domain-like | 5.316e-16 | DIRECT |
56176,55447
56176 - FAD-binding/transporter-associated domain-like
55447 - CO dehydrogenase flavoprotein C-terminal domain-like | 8.835e-16 | DIRECT |
47741,56176
47741 - CO dehydrogenase ISP C-domain like
56176 - FAD-binding/transporter-associated domain-like | 0.00000000000000176 | DIRECT |
51905,54373
51905 - FAD/NAD(P)-binding domain
54373 - FAD-linked reductases, C-terminal domain | 0.000000000001115 | DIRECT |
52777,56801
52777 - CoA-dependent acyltransferases
56801 - Acetyl-CoA synthetase-like | 0.0000001258 | DIRECT |
52922,52518
52922 - TK C-terminal domain-like
52518 - Thiamin diphosphate-binding fold (THDP-binding) | 0.000004399 | DIRECT |
50965,81296
50965 - Galactose oxidase, central domain
81296 - E set domains | 0.0002023 | DIRECT |
52922,53323
52922 - TK C-terminal domain-like
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.0002023 | DIRECT |
| Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
52518,52518
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52518 - Thiamin diphosphate-binding fold (THDP-binding) | 0 | Direct |
51735,69075
51735 - NAD(P)-binding Rossmann-fold domains
69075 - Glutamyl tRNA-reductase dimerization domain | 0 | Direct |
81935,51730
81935 - N-terminal domain of bifunctional PutA protein
51730 - FAD-linked oxidoreductase | 0 | Direct |
52518,52922
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52922 - TK C-terminal domain-like | 0 | Direct |
69336,50692
69336 - Alpha subunit of glutamate synthase, C-terminal domain
50692 - ADC-like | 0 | Direct |
53323,54862
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
54862 - 4Fe-4S ferredoxins | 0 | Direct |
56228,48310
56228 - Aldehyde ferredoxin oxidoreductase, N-terminal domain
48310 - Aldehyde ferredoxin oxidoreductase, C-terminal domains | 0 | Direct |
52518,54862
52518 - Thiamin diphosphate-binding fold (THDP-binding)
54862 - 4Fe-4S ferredoxins | 0 | Direct |
47598,81935
47598 - Ribbon-helix-helix
81935 - N-terminal domain of bifunctional PutA protein | 0 | Direct |
51730,53720
51730 - FAD-linked oxidoreductase
53720 - ALDH-like | 0 | Direct |
56821,46548
56821 - Prismane protein-like
46548 - alpha-helical ferredoxin | 0 | Direct |
54862,52518
54862 - 4Fe-4S ferredoxins
52518 - Thiamin diphosphate-binding fold (THDP-binding) | 0 | Direct |
69742,51735
69742 - Glutamyl tRNA-reductase catalytic, N-terminal domain
51735 - NAD(P)-binding Rossmann-fold domains | 0 | Direct |
54292,47741
54292 - 2Fe-2S ferredoxin-like
47741 - CO dehydrogenase ISP C-domain like | 0 | Direct |
53633,53720
53633 - Carbamate kinase-like
53720 - ALDH-like | 0 | Direct |
51735,55347
51735 - NAD(P)-binding Rossmann-fold domains
55347 - Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0 | Direct |
53720,56796
53720 - ALDH-like
56796 - Dehydroquinate synthase-like | 0 | Direct |
53323,52518
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
52518 - Thiamin diphosphate-binding fold (THDP-binding) | 0 | Direct |
54665,56003
54665 - CO dehydrogenase molybdoprotein N-domain-like
56003 - Molybdenum cofactor-binding domain | 1.78e-16 | Direct |
55447,54665
55447 - CO dehydrogenase flavoprotein C-terminal domain-like
54665 - CO dehydrogenase molybdoprotein N-domain-like | 5.316e-16 | Direct |
56176,55447
56176 - FAD-binding/transporter-associated domain-like
55447 - CO dehydrogenase flavoprotein C-terminal domain-like | 8.835e-16 | Direct |
47741,56176
47741 - CO dehydrogenase ISP C-domain like
56176 - FAD-binding/transporter-associated domain-like | 0.00000000000000176 | Direct |
51905,54373
51905 - FAD/NAD(P)-binding domain
54373 - FAD-linked reductases, C-terminal domain | 0.000000000001115 | Direct |
52777,56801
52777 - CoA-dependent acyltransferases
56801 - Acetyl-CoA synthetase-like | 0.0000001258 | Direct |
52922,52518
52922 - TK C-terminal domain-like
52518 - Thiamin diphosphate-binding fold (THDP-binding) | 0.000004399 | Direct |
50965,81296
50965 - Galactose oxidase, central domain
81296 - E set domains | 0.0002023 | Direct |
52922,53323
52922 - TK C-terminal domain-like
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.0002023 | Direct |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Jump to [ Top · Hierarchy ]
Supra-domain (Triple) in N- to C-terminal order( show details)
Highlighted in gray are those with FDR>0.001
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
53323,52518,52922
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52922 - TK C-terminal domain-like | 0 | DIRECT |
52518,52922,53323
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52922 - TK C-terminal domain-like
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0 | DIRECT |
47598,81935,51730
47598 - Ribbon-helix-helix
81935 - N-terminal domain of bifunctional PutA protein
51730 - FAD-linked oxidoreductase | 0 | DIRECT |
52518,52922,52518
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52922 - TK C-terminal domain-like
52518 - Thiamin diphosphate-binding fold (THDP-binding) | 0 | DIRECT |
69742,51735,69075
69742 - Glutamyl tRNA-reductase catalytic, N-terminal domain
51735 - NAD(P)-binding Rossmann-fold domains
69075 - Glutamyl tRNA-reductase dimerization domain | 0 | DIRECT |
81935,51730,53720
81935 - N-terminal domain of bifunctional PutA protein
51730 - FAD-linked oxidoreductase
53720 - ALDH-like | 0 | DIRECT |
52922,52518,54862
52922 - TK C-terminal domain-like
52518 - Thiamin diphosphate-binding fold (THDP-binding)
54862 - 4Fe-4S ferredoxins | 0 | DIRECT |
53323,54862,52518
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
54862 - 4Fe-4S ferredoxins
52518 - Thiamin diphosphate-binding fold (THDP-binding) | 0 | DIRECT |
52922,53323,54862
52922 - TK C-terminal domain-like
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
54862 - 4Fe-4S ferredoxins | 0 | DIRECT |
55447,54665,56003
55447 - CO dehydrogenase flavoprotein C-terminal domain-like
54665 - CO dehydrogenase molybdoprotein N-domain-like
56003 - Molybdenum cofactor-binding domain | 5.316e-16 | DIRECT |
56176,55447,54665
56176 - FAD-binding/transporter-associated domain-like
55447 - CO dehydrogenase flavoprotein C-terminal domain-like
54665 - CO dehydrogenase molybdoprotein N-domain-like | 5.316e-16 | DIRECT |
54292,47741,56176
54292 - 2Fe-2S ferredoxin-like
47741 - CO dehydrogenase ISP C-domain like
56176 - FAD-binding/transporter-associated domain-like | 0.00000000000000176 | DIRECT |
47741,56176,55447
47741 - CO dehydrogenase ISP C-domain like
56176 - FAD-binding/transporter-associated domain-like
55447 - CO dehydrogenase flavoprotein C-terminal domain-like | 0.000000000000008896 | DIRECT |
52518,52518,52922
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52922 - TK C-terminal domain-like | 0.2628 | INHERITED FROM: Pyruvate dehydrogenase (acetyl-transferring) || With a disulfide as acceptor |
| Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
53323,52518,52922
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52922 - TK C-terminal domain-like | 0 | Direct |
52518,52922,53323
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52922 - TK C-terminal domain-like
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0 | Direct |
47598,81935,51730
47598 - Ribbon-helix-helix
81935 - N-terminal domain of bifunctional PutA protein
51730 - FAD-linked oxidoreductase | 0 | Direct |
52518,52922,52518
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52922 - TK C-terminal domain-like
52518 - Thiamin diphosphate-binding fold (THDP-binding) | 0 | Direct |
69742,51735,69075
69742 - Glutamyl tRNA-reductase catalytic, N-terminal domain
51735 - NAD(P)-binding Rossmann-fold domains
69075 - Glutamyl tRNA-reductase dimerization domain | 0 | Direct |
81935,51730,53720
81935 - N-terminal domain of bifunctional PutA protein
51730 - FAD-linked oxidoreductase
53720 - ALDH-like | 0 | Direct |
52922,52518,54862
52922 - TK C-terminal domain-like
52518 - Thiamin diphosphate-binding fold (THDP-binding)
54862 - 4Fe-4S ferredoxins | 0 | Direct |
53323,54862,52518
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
54862 - 4Fe-4S ferredoxins
52518 - Thiamin diphosphate-binding fold (THDP-binding) | 0 | Direct |
52922,53323,54862
52922 - TK C-terminal domain-like
53323 - Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
54862 - 4Fe-4S ferredoxins | 0 | Direct |
55447,54665,56003
55447 - CO dehydrogenase flavoprotein C-terminal domain-like
54665 - CO dehydrogenase molybdoprotein N-domain-like
56003 - Molybdenum cofactor-binding domain | 5.316e-16 | Direct |
56176,55447,54665
56176 - FAD-binding/transporter-associated domain-like
55447 - CO dehydrogenase flavoprotein C-terminal domain-like
54665 - CO dehydrogenase molybdoprotein N-domain-like | 5.316e-16 | Direct |
54292,47741,56176
54292 - 2Fe-2S ferredoxin-like
47741 - CO dehydrogenase ISP C-domain like
56176 - FAD-binding/transporter-associated domain-like | 0.00000000000000176 | Direct |
47741,56176,55447
47741 - CO dehydrogenase ISP C-domain like
56176 - FAD-binding/transporter-associated domain-like
55447 - CO dehydrogenase flavoprotein C-terminal domain-like | 0.000000000000008896 | Direct |
52518,52518,52922
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52518 - Thiamin diphosphate-binding fold (THDP-binding)
52922 - TK C-terminal domain-like | 0.2628 | Inherited |
LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm
Plot distribution on species Tree Of Life (sTOL) for Superfamily and/or Family domains annotated by this EC term
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Plot tree as:
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Download Newick format tree:
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( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domain
architecture data for all genomes in SUPERFAMILY. The PAUP
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Plot distribution on species Tree Of Life (sTOL) for single supra-domains annotated by this EC term
|
Plot tree as:
| |
Download Newick format tree:
| |
Browsing in TREE OF LIFE:
|
( show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
|
|
> BO Hierarchy > Acting on the aldehyde or oxo group of donors
