SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Ficedula albicollis 76_1.0 > ENSFALP00000009154

Domain assignment for ENSFALP00000009154 from Ficedula albicollis 76_1.0

Domain architecture

Domain assignment details

(show help)
Strong hits

Sequence:  ENSFALP00000009154
Domain Number 1 Region: 1612-1825
Classification Level Classification E-value
Superfamily TPR-like 1e-41
Family HAT/Suf repeat 0.0017
Further Details:      
 
Domain Number 2 Region: 442-535
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 1.72e-20
Family Cold shock DNA-binding domain-like 0.0097
Further Details:      
 
Domain Number 3 Region: 727-811
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 2.46e-19
Family Cold shock DNA-binding domain-like 0.0016
Further Details:      
 
Domain Number 4 Region: 537-617
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.00000000000000366
Family Cold shock DNA-binding domain-like 0.004
Further Details:      
 
Domain Number 5 Region: 1215-1307
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.0000000000000858
Family Cold shock DNA-binding domain-like 0.0067
Further Details:      
 
Domain Number 6 Region: 172-269
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.0000000000025
Family Cold shock DNA-binding domain-like 0.00014
Further Details:      
 
Domain Number 7 Region: 1309-1392
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.0000000000724
Family Cold shock DNA-binding domain-like 0.008
Further Details:      
 
Domain Number 8 Region: 78-181
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.00000000119
Family Cold shock DNA-binding domain-like 0.011
Further Details:      
 
Domain Number 9 Region: 1026-1107
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.00000000403
Family Cold shock DNA-binding domain-like 0.011
Further Details:      
 
Domain Number 10 Region: 1515-1650
Classification Level Classification E-value
Superfamily TPR-like 0.00000000522
Family HAT/Suf repeat 0.057
Further Details:      
 
Domain Number 11 Region: 1139-1217
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.000000191
Family Cold shock DNA-binding domain-like 0.031
Further Details:      
 
Domain Number 12 Region: 276-353
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.00000134
Family Cold shock DNA-binding domain-like 0.034
Further Details:      
 
Weak hits

Sequence:  ENSFALP00000009154
Domain Number - Region: 375-446
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.000375
Family Cold shock DNA-binding domain-like 0.037
Further Details:      
 
Domain Number - Region: 630-716
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.0005
Family Cold shock DNA-binding domain-like 0.047
Further Details:      
 
Domain Number - Region: 923-996
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.0038
Family Cold shock DNA-binding domain-like 0.064
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSFALP00000009154   Gene: ENSFALG00000008775   Transcript: ENSFALT00000009193
Sequence length 1833
Comment pep:known_by_projection scaffold:FicAlb_1.4:JH603177.1:16585051:16608160:1 gene:ENSFALG00000008775 transcript:ENSFALT00000009193 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MASMEENFPRGGIQKKPAEGKTPKPKLERDNLFDVQHEEKSQKRKRSQKDQGKQQESKKR
FKADKEAAAKDNVMIIGPLTIEALSEEMLLLGCIKEVTDYELAISLPNGLSGFVPVTQIS
DAYSKLLTKQVAQGELLEELNSLPDLFSPGTLVRCIVTSIEKSDDGRRSVKLSIDPKKVN
KGLNSTALAAGMLLSGSVMSVEDHGYLIDIGVTGTHAFLPHQKAKTYIKALKKGPDLKIG
QNLNCLIVEVKNEGRVVCLSIDRSEVAASIATERQNWTLSNLLPGLVVKARVQKLAPLGM
KLTFLSYFTGIVDFMHMDPEKSMSYSADQVVRACVLSVHPTSRAVRLSLLPPFLHAGGAP
RQLPGQRLGAVLEEATVKAFYKQFGAVFELDDGTLAFARLKHLSKTRKSFKPGAFKEGCK
HKCRIIDYSLMDEMCIVSLKHQIIEARFLQYQDIHVGDVVQGKVVSLKPIGMQVKVADGI
RGLVPSIHLSDVILKQPEKKYNIGDEVKCRVLECNPEGKKLILTLKKSLVQSKLPVLSNY
EDAKPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISCPDKVFYEGQVLKVMV
LKCEPQQERLLLSFKLSSKPGPEDKWKCTPKEKQEVKYQIGEMVDVKILKKKDNGLEVSI
LEDEDNVVAWIPMLHLSDFVATSKLLWHCLQEGDVLPRVMYLSDKGEHIILSRKSAVISA
VQEQQVVRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHF
VVGQTVIAKVMSIDEEKQRVLLNLKVSECSSGDSAAESFALLNQYFEELKGIKDLLKRGE
PSICELVPGKRVHLVVQGVREDGSALFSGCSATGWTVTATHYHLGGKNIAHGEKRKALVL
HVDALKSEVYVSLREELLKQRPRQLRENSQHSAVVQHITEHFAIVSLGQTAQLAAVPIAC
HFNDTFRFDSEKLSVGRTISVTLKAVKKNHHGVLLAVQGPAKRNVFVRVRNESETALEEM
LPALKHSLSTGNLVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTSTLKTG
QKVTARVIGGRDVNTHRCLPITHPHFKQSIPELSIRPSEKEGEFTAMLNLKEETSLKELY
SVGQTVTCFVKKYNMLKNWLEVEVGPDIRGRVPHLLLSLNTKVLKHPEKTFKNGQAISAT
VTGTDATGTNLCLSLTGIQSLEQGTISVGMVIKVTPHTGLTIALPGGKTGKVSIFHLNDT
YSEDPLVNFKVGKIVRCYILSNENGKIQLSLRQSRLNPKINSKVEDIEITSIKDVKKGQL
VRGYVKSITPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVVGVNR
KEKHIELSLLPEDTGMPSVLPESLGLPQYGAEEEKREADIEEKREEPKLKKKRRGNIENH
QEAKPKKRKICPADENDSGIEVYYREEEEDDQEEEADKKKTKVKKPGEAPRLQVSMGFTW
DEDNAMDIPVLDQKEESSESEEEEEDMQSKLKKRTKKEKELEKQKEEKELCKVEAALMDP
SRQPQSADDFDRLVLGSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKL
NVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYQTML
KRFRQEKSVWLKYASFLLKQGQAEATHRLLERALKALPTKEHVDVISRFAQLEFHSGDTE
HAKALFESTLSSYPKRTDVWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFKRY
LDYEKKFGTAESVLAVKRAALEYVETKSSLADT
Download sequence
Identical sequences U3K2A0
ENSFALP00000009154 XP_005048646.1.66865

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.