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Domain assignment for YNL178W from Saccharomyces cerevisiae Sigma1278b

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YNL178W
Domain Number 1 Region: 95-220
Classification Level Classification E-value
Superfamily CATH 2.4e-50
Family CATH 0.000000682
Further Details:      
 
Domain Number 2 Region: 93-191
Classification Level Classification E-value
Superfamily Ribosomal protein S3 C-terminal domain 1.1e-26
Family Ribosomal protein S3 C-terminal domain 0.0016
Further Details:      
 
Domain Number 3 Region: 13-99
Classification Level Classification E-value
Superfamily Prokaryotic type KH domain (KH-domain type II) 5.61e-22
Family Prokaryotic type KH domain (KH-domain type II) 0.0000389
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) YNL178W
Sequence length 240
Comment RPS3 ORF Verified Protein component of the small (40S) ribosomal subunit, has apurinic/apyrimidinic (AP) endonuclease activity; essential for viability; has similarity to E. coli S3 and rat S3 ribosomal proteins
Sequence
MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG
ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY
GVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQG
VLGIKVKIMRDPAKSRTGPKALPDAVTIIEPKEEEPILAPSVKDYRPAEETEAQAEPVEA
Download sequence
Identical sequences A0A0L8VJB6 A0A250WGK9 A6ZRQ7 B3LP29 B5VQM9 C7GTF2 C8ZG50 E7KH01 E7KTE7 E7LZ98 E7QJS6 G2WLT0 H0GMF0 N1NXR8 P05750
YNL178W YNL178W 3j6x_S3 3j6y_S3 3j77_S3 3j78_S3 4v6i_AB 4v7r_AC 4v7r_CC 4v88_AD 4v88_CD 4v8y_AD 4v8z_AD 5juo_AB 5jup_AB 5jus_AB 5jut_AB 5juu_AB 5mc6_A 6fai_D YNL178W YNL178W YNL178W YNL178W YNL178W ORFP:18229 YNL178W SCRT_03310 tr|A6ZRQ7|A6ZRQ7_YEAS7 YNL178W YNL178W YNL178W 4932.YNL178W YNL178W YNL178W YNL178W ORFP:18675 YNL178W YNL178W NP_014221.3.97178 YNL178W YNL178W YNL178W

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