SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for YJR050W from Saccharomyces cerevisiae YJM789

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  YJR050W
Domain Number 1 Region: 28-97
Classification Level Classification E-value
Superfamily ISY1 domain-like 6.28e-23
Family ISY1 N-terminal domain-like 0.0012
Further Details:      
 
Weak hits

Sequence:  YJR050W
Domain Number - Region: 88-128
Classification Level Classification E-value
Superfamily L35p-like 0.00445
Family Ribosomal protein L35p 0.0084
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) YJR050W
Sequence length 235
Comment ISY1 ORF Verified Member of NineTeen Complex (NTC) that contains Prp19p and stabilizes U6 snRNA in catalytic forms of spliceosome containing U2, U5, and U6 snRNAs, interacts with Prp16p to modulate splicing fidelity; isy1 syf2 cells have defective spindles
Sequence
MSRNVDKANSVLVRFQEQQAESAGGYKDYSRYQRPRNVSKVKSIKEANEWKRQVSKEIKQ
KSTRIYDPSLNEVQIAELNDELNNLFKEWKRWQWHIDHTLMEKKTKRKRLEDSHVLVNSG
KLINGKRYFGRALELPEVKEWLKQSQRQNDGGSINTKCIPKDKNDFYYHGKVTAALTEFE
ANWTSILKAHYNVPVNEDEDEMSKQTQEIHVPTLADMEHWLVQRRKKKLMDELNL
Download sequence
Identical sequences A6ZQ09 G2WH55
tr|A6ZQ09|A6ZQ09_YEAS7 YJR050W

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]