SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 1c4kA from PDB chains (SCOP 1.75)

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  1c4kA
Domain Number 1 Region: 108-566
Classification Level Classification E-value
Superfamily PLP-dependent transferases 8e-124
Family Ornithine decarboxylase major domain 0.0000000000000207
Further Details:      
 
Domain Number 2 Region: 570-728
Classification Level Classification E-value
Superfamily Ornithine decarboxylase C-terminal domain 1.1e-45
Family Ornithine decarboxylase C-terminal domain 0.00000002
Further Details:      
 
Domain Number 3 Region: 3-107
Classification Level Classification E-value
Superfamily CheY-like 3.85e-27
Family Ornithine decarboxylase N-terminal "wing" domain 0.00000125
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) SCOP: 1c4kA   PDB: 1c4k
Sequence length 730
Comment (A:)
Sequence
ssslkiastqearqyfdtdrvvvdavgsdftdvgaviamdyetdvidaadatkfgipvfa
vtkdaqaisadelkkifhiidlenkfdatvnareietavnnyedsilppffkslkeyvsr
yliqfdcpghqggqyyrkhpagrefydffgetvfradlcnadvalgdllihegpavaaek
haarvynadktyfvlggssnanntvtsalvsngdlvlfdrnnhksvynsalamaggrpvy
lqtnrnpygfiggiydsdfdekkirelaakvdperakwkrpfrlaviqlgtydgtiynah
evvkrighlcdyiefdsawvgyeqfipmmrnssplliddlgpedpgiivvqsvhkqqagf
sqtsqihkkdshikgqlrycdhkhfnnsfnlfmstspfypmyaaldvnaamqegeagrkl
whdllittiearkklikagsmfrpfvppvvngkkwedgdtedmannidywrfekgakwha
yegygdnqyyvdpnkfmlttpginpetgdyedfgvpativanylrdhgiipeksdlnsil
flmtpaetpakmnnlitqllqlqrlieedaplkqvlpsiyaaneeryngytirelcqelh
dfyknnntftyqkrlflreffpeqgmlpyearqefirnhnklvplnkiegeialegalpy
ppgvfcvapgekwsetavkyftilqdginnfpgfapeiqgvyfkqegdkvvaygevydae
vaknddrynn
Download sequence
Identical sequences 1c4kA 1c4k_A

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]