SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 1n3aA from PDB chains (SCOP 1.75)

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  1n3aA
Domain Number 1 Region: 128-314
Classification Level Classification E-value
Superfamily DNA-glycosylase 1.03e-46
Family DNA repair glycosylase, 2 C-terminal domains 0.0000000135
Further Details:      
 
Domain Number 2 Region: 5-127
Classification Level Classification E-value
Superfamily TATA-box binding protein-like 1.21e-38
Family DNA repair glycosylase, N-terminal domain 0.000000197
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) SCOP: 1n3aA   PDB: 1n3a
Sequence length 317
Comment (A:)
Sequence
gseghrtlastpalwasipcprselrldlvlpsgqsfrwreqspahwsgvladqvwtltq
teeqlhctvyrgdksqasrptpdeleavrkyfqldvtlaqlyhhwgsvdshfqevaqkfq
gvrllrqdpieclfsficssnnniaritgmverlcqafgprliqlddvtyhgfpslqala
gpeveahlrklglgyraryvsasaraileeqgglawlqqlressyeeahkalcilpgvgt
kvadciclmaldkpqavpvqvhmwhiaqrdyswhpttsqakgpspqtnkelgnffrslwg
pyagwaqavlfsadlrq
Download sequence
Identical sequences 1n3aA 1n3a_A

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]