SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Q4DMK9 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Q4DMK9
Domain Number 1 Region: 94-190
Classification Level Classification E-value
Superfamily Ribosomal protein S3 C-terminal domain 4.17e-25
Family Ribosomal protein S3 C-terminal domain 0.0015
Further Details:      
 
Domain Number 2 Region: 13-98
Classification Level Classification E-value
Superfamily Prokaryotic type KH domain (KH-domain type II) 1.04e-19
Family Prokaryotic type KH domain (KH-domain type II) 0.0000625
Further Details:      
 
Domain Number 3 Region: 166-211
Classification Level Classification E-value
Superfamily CATH 0.0000000000443
Family CATH 0.002
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Q4DMK9
Sequence length 214
Comment (tr|Q4DMK9|Q4DMK9_TRYCC) 40S ribosomal protein S3, putative {ECO:0000313|EMBL:EAN93771.1} KW=Complete proteome; Reference proteome OX=353153 OS=Trypanosoma cruzi (strain CL Brener). GN=Tc00.1047053504021.109 OC=Schizotrypanum.
Sequence
MGPLSKKRMIIRDGVFYAELFEFLKRELADDGFAGVEHRVTSTRTEIVIRATKTREVLGE
KGRRIRELTACLQQRFHYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMG
IIRHVMESGAKGCEVTVGGKIKGQRAKSMTFRDGYMIKSGTAHKNFVDVATRHCHLRAGT
LGVKVKIMLPKSMQNEEEILPDVITVLEPKEITA
Download sequence
Identical sequences Q4DMK9
5opt_m psu|Tc00.1047053507677.39 gi|71408264|ref|XP_806547.1| gi|71653987|ref|XP_815622.1| gi|71656239|ref|XP_816670.1| XP_806547.1.87722 XP_815622.1.87722 XP_816670.1.87722

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]