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Allantoicase repeat family domain assignments
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PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 4 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1o59A   7.72e-64   0.00000000462   13-198   1o59 A:0-187  
  5.28e-52   0.0000000601   207-355   1o59 A:194-343  
1sg3A   1.34e-63   0.00000000549   4-186   1o59 A:0-187  
  4.88e-52   0.0000000601   195-343   1o59 A:194-343  

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Select to display   Genome       Domains   Proteins
No Yes ALL   30365 30365
No Yes Homo sapiens 76_38 Human 1 1
No Yes Otolemur garnettii 76_3 Small-eared galago 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 76_5 Platypus 2 1
No Yes Saccoglossus kowalevskii v3.0   1 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 1 1
No Yes Xenopus laevis African clawed frog 4 4
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 1 1
No Yes Latimeria chalumnae 76_1 Coelacanth 1 1
No Yes Lepisosteus oculatus 76 Spotted gar 2 2
No Yes Gadus morhua 76_1 Atlantic cod 1 1
No Yes Takifugu rubripes 76_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 2 1
No Yes Oryzias latipes 76_1 Japanese medaka 2 1
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 1
No Yes Poecilia formosa 76 Amazon molly 2 1
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 2 1
No Yes Astyanax mexicanus 76 Mexican tetra 2 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 1 1
No Yes Adineta vaga   4 2
No Yes Crassostrea gigas 22 Pacific oyster 2 1
No Yes Capitella sp. I   1 1
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Acropora digitifera v1.0   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   2 2
No Yes Mortierella verticillata NRRL 6337   8 4
No Yes Phycomyces blakesleeanus   4 2
No Yes Rhizopus oryzae RA 99-880   2 1
No Yes Mucor circinelloides   4 2
No Yes Rhizomucor miehei CAU432   4 2
No Yes Sporisorium reilianum 22   2 1
No Yes Ustilago maydis   2 1
No Yes Mixia osmundae IAM 14324 v1.0   2 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   2 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   2 1
No Yes Rhodotorula graminis WP1 v1.0   2 1
No Yes Sporobolomyces roseus IAM 13481   2 1
No Yes Microbotryum violaceum 22   3 2
No Yes Wallemia sebi v1.0   2 1
No Yes Sphaerobolus stellatus v1.0   2 1
No Yes Piloderma croceum F 1598 v1.0   2 1
No Yes Serpula lacrymans var. lacrymans S7.9   2 1
No Yes Coniophora puteana   2 1
No Yes Hydnomerulius pinastri v2.0   2 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   2 1
No Yes Pisolithus microcarpus 441 v1.0   2 1
No Yes Pisolithus tinctorius Marx 270 v1.0   2 1
No Yes Scleroderma citrinum Foug A v1.0   2 1
No Yes Coprinopsis cinerea okayama7 130 v3   2 1
No Yes Pleurotus ostreatus Oyster mushroom 2 1
No Yes Amanita thiersii Skay4041 v1.0   2 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 2 1
No Yes Galerina marginata v1.0   2 1
No Yes Hebeloma cylindrosporum h7 v2.0   2 1
No Yes Laccaria bicolor S238N-H82   2 1
No Yes Agaricus bisporus var. bisporus   2 1
No Yes Schizophyllum commune   2 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 1
No Yes Heterobasidion annosum   2 1
No Yes Gloeophyllum trabeumv1.0   2 1
No Yes Punctularia strigosozonata v1.0   2 1
No Yes Sebacina vermifera MAFF 305830 v1.0   2 1
No Yes Fomitiporia mediterranea v1.0   2 1
No Yes Tulasnella calospora AL13/4D v1.0   2 1
No Yes Postia placenta   4 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 1
No Yes Fomitopsis pinicolav1.0   2 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 1
No Yes Phanerochaete chrysosporium RP-78 2.1   2 1
No Yes Dichomitus squalens   2 1
No Yes Trametes versicolor v1.0   2 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   2 1
No Yes Apiospora montagnei NRRL 25634 v1.0   2 1
No Yes Magnaporthe grisea 70-15   2 1
No Yes Podospora anserina   2 1
No Yes Sporotrichum thermophile ATCC 42464   2 1
No Yes Thielavia terrestris NRRL 8126   2 1
No Yes Chaetomium globosum CBS 148.51   2 1
No Yes Neurospora tetrasperma   2 1
No Yes Neurospora discreta FGSC 8579   2 1
No Yes Neurospora crassa OR74A   2 1
No Yes Cryphonectria parasitica Chestnut blight fungus 2 1
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   2 1
No Yes Acremonium alcalophilumv 1.0   2 1
No Yes Glomerella graminicola 22   2 1
No Yes Fusarium graminearum   2 1
No Yes Nectria haematococca mpVI   2 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   2 1
No Yes Fusarium verticillioides 7600   2 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 1
No Yes Trichoderma atroviride   2 1
No Yes Trichoderma citrinoviride v1.0   2 1
No Yes Trichoderma reesei 1.2   2 1
No Yes Trichoderma virens Gv29-8   2 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 1
No Yes Botrytis cinerea B05.10   2 1
No Yes Sclerotinia sclerotiorum   2 1
No Yes Didymella exigua CBS 183.55 v1.0   2 1
No Yes Leptosphaeria maculans 22   2 1
No Yes Setosphaeria turcica v1.0   2 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 1
No Yes Cochliobolus victoriae FI3 v1.0   2 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   2 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 1
No Yes Alternaria brassicicola   2 1
No Yes Cochliobolus lunatus m118 v2.0   2 1
No Yes Pyrenophora teres f. teres 22   2 1
No Yes Pyrenophora tritici-repentis   2 1
No Yes Stagonospora nodorum   2 1
No Yes Mycosphaerella graminicola IPO323   2 1
No Yes Zasmidium cellare ATCC 36951 v1.0   2 1
No Yes Dothistroma septosporum   2 1
No Yes Septoria musiva v1.0   2 1
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 1
No Yes Paracoccidioides brasiliensis Pb18   2 1
No Yes Coccidioides posadasii RMSCC 3488   2 1
No Yes Coccidioides immitis RS   1 1
No Yes Ajellomyces dermatitidis SLH14081   2 1
No Yes Histoplasma capsulatum class NAmI strain WU24   2 1
No Yes Microsporum canis CBS 113480   2 1
No Yes Trichophyton equinum CBS 127.97   2 1
No Yes Trichophyton verrucosum HKI 0517   2 1
No Yes Arthroderma benhamiae CBS 112371   2 1
No Yes Trichophyton tonsurans CBS 112818   2 1
No Yes Trichophyton rubrum CBS 118892   2 1
No Yes Uncinocarpus reesii 1704   1 1
No Yes Aspergillus zonatus v1.0   2 1
No Yes Aspergillus acidus v1.0   2 1
No Yes Aspergillus fumigatus Af293   2 1
No Yes Aspergillus brasiliensis v1.0   2 1
No Yes Aspergillus nidulans FGSC A4   2 1
No Yes Aspergillus glaucus   2 1
No Yes Aspergillus carbonarius ITEM 5010   2 1
No Yes Neosartorya fischeri NRRL 181   2 1
No Yes Aspergillus tubingensis v1.0   2 1
No Yes Aspergillus wentii v1.0   2 1
No Yes Aspergillus niger 22   2 1
No Yes Aspergillus niger ATCC 1015   2 1
No Yes Penicillium marneffei ATCC 18224   2 1
No Yes Tuber melanosporum Mel28 22   3 2
No Yes Tuber melanosporum Vittad Perigord truffle 3 2
No Yes Hansenula polymorpha v2.0   2 1
No Yes Dekkera bruxellensis CBS 2499 v2.0   2 1
No Yes Pichia membranifaciensv1.0   2 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   2 1
No Yes Candida dubliniensis CD36   2 1
No Yes Candida tropicalis MYA-3404   2 1
No Yes Candida parapsilosis   2 1
No Yes Candida albicans SC5314   2 1
No Yes Lodderomyces elongisporus NRRL YB-4239   2 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   2 1
No Yes Pichia stipitis CBS 6054   2 1
No Yes Candida guilliermondii ATCC 6260   2 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   2 1
No Yes Debaromyces hansenii   2 1
No Yes Wickerhamomyces anomalus   2 1
No Yes Pichia pastoris GS115   2 1
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   2 1
No Yes Yarrowia lipolytica CLIB122   2 1
No Yes Candida lusitaniae ATCC 42720   2 1
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   2 1
No Yes Kluyveromyces thermotolerans CBS 6340   2 1
No Yes Lachancea kluyveri   2 1
No Yes Kluyveromyces waltii   2 1
No Yes Ashbya gossypii ATCC 10895   2 1
No Yes Zygosaccharomyces rouxii   2 1
No Yes Saccharomyces mikatae MIT   2 1
No Yes Saccharomyces paradoxus MIT   2 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 2 1
No Yes Saccharomyces bayanus MIT   2 1
No Yes Kluyveromyces lactis   2 1
No Yes Schizosaccharomyces cryophilus OY26 22   2 1
No Yes Schizosaccharomyces octosporus yFS286   2 1
No Yes Schizosaccharomyces japonicus yFS275   2 1
No Yes Schizosaccharomyces pombe Fission yeast 2 1
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Fragilariopsis cylindrus   4 2
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Modestobacter marinus   1 1
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Stackebrandtia nassauensis DSM 44728   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Streptosporangium roseum DSM 43021   2 2
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   2 2
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   1 1
No Yes Pseudonocardia dioxanivorans CB1190   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Actinoplanes sp. N902-109   1 1
No Yes Actinoplanes missouriensis 431   1 1
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Rhodococcus opacus B4   2 2
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium massiliense str. GO 06   1 1
No Yes Mycobacterium abscessus ATCC 19977   1 1
No Yes Mycobacterium sp. JLS   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium ulcerans Agy99   1 1
No Yes Mycobacterium marinum M   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Corynebacterium variabile DSM 44702   1 1
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Sorangium cellulosum 'So ce 56'   2 1
No Yes Stigmatella aurantiaca DW4/3-1   2 1
No Yes Corallococcus coralloides DSM 2259   2 1
No Yes Myxococcus fulvus HW-1   2 1
No Yes Thauera sp. MZ1T   2 1
No Yes Azoarcus sp. KH32C   4 2
No Yes Azoarcus sp. BH72   2 1
No Yes Pseudogulbenkiania sp. NH8B   2 1
No Yes Burkholderia phytofirmans PsJN   2 2
No Yes Burkholderia phymatum STM815   2 2
No Yes Burkholderia xenovorans LB400   7 4
No Yes Ralstonia eutropha H16   1 1
No Yes Ralstonia pickettii 12D   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Burkholderia sp. RPE64   2 2
No Yes Burkholderia sp. CCGE1002   2 2
No Yes Burkholderia thailandensis E264   3 2
No Yes Burkholderia pseudomallei 1106a   3 2
No Yes Burkholderia mallei SAVP1   3 2
No Yes Burkholderia ambifaria AMMD   3 2
No Yes Burkholderia cenocepacia HI2424   3 2
No Yes Burkholderia multivorans ATCC 17616   3 2
No Yes Burkholderia vietnamiensis G4   2 2
No Yes Burkholderia gladioli BSR3   3 2
No Yes Burkholderia glumae BGR1   3 2
No Yes Pusillimonas sp. T7-7   2 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Candidatus Puniceispirillum marinum IMCC1322   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Photobacterium profundum SS9   2 1
No Yes Colwellia psychrerythraea 34H   2 1
No Yes Hahella chejuensis KCTC 2396   2 1
No Yes Frateuria aurantia DSM 6220   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas sp. TKP   2 1
No Yes Pseudomonas sp. UW4   2 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   2 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   2 1
No Yes Pseudomonas stutzeri A1501   1 1
No Yes Pseudomonas protegens Pf-5   2 1
No Yes Pseudomonas fluorescens SBW25   2 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   2 1
No Yes Acinetobacter oleivorans DR1   2 1
No Yes Acinetobacter calcoaceticus PHEA-2   2 1
No Yes Acinetobacter baumannii ATCC 17978   2 1
No Yes Acinetobacter sp. ADP1   2 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 3 3
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   2 1
No Yes Paracoccidioides brasiliensis Pb03   2 1
No Yes Coccidioides posadasii str. Silveira   2 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   2 1
No Yes Coccidioides immitis H538.4   2 1
No Yes Ajellomyces dermatitidis ER-3   2 1
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   2 1
No Yes Histoplasma capsulatum G186AR   2 1
No Yes Aspergillus fumigatus A1163   2 1
No Yes Candida albicans WO-1   2 1
No Yes Saccharomyces cerevisiae UC5   2 1
No Yes Saccharomyces cerevisiae PW5   2 1
No Yes Saccharomyces cerevisiae FL100   2 1
No Yes Saccharomyces cerevisiae CLIB324   2 1
No Yes Saccharomyces cerevisiae CBS7960   2 1
No Yes Saccharomyces cerevisiae YJM269   2 1
No Yes Saccharomyces cerevisiae T7   2 1
No Yes Saccharomyces cerevisiae FostersB   1 1
No Yes Saccharomyces cerevisiae FostersO   2 1
No Yes Saccharomyces cerevisiae VL3   2 1
No Yes Saccharomyces cerevisiae Vin13   2 1
No Yes Saccharomyces cerevisiae LalvinQA23   2 1
No Yes Saccharomyces cerevisiae AWRI796   2 1
No Yes Saccharomyces cerevisiae Sigma1278b   2 1
No Yes Saccharomyces cerevisiae W303   2 1
No Yes Saccharomyces cerevisiae JAY291   2 1
No Yes Saccharomyces cerevisiae M22   2 1
No Yes Saccharomyces cerevisiae CLIB215   2 1
No Yes Saccharomyces cerevisiae Y10   2 1
No Yes Saccharomyces cerevisiae YJM789   2 1
No Yes Saccharomyces cerevisiae YJM789   2 1
No Yes Saccharomyces cerevisiae RM11-1a   2 1
No Yes Saccharomyces cerevisiae RM11-1a   2 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 2 1
No Yes Schizosaccharomyces pombe 972h-   2 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Frankia sp. EuI1c   1 1
No Yes Frankia sp. CcI3   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   2 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces fulvissimus DSM 40593   2 2
No Yes Streptomyces venezuelae ATCC 10712   2 2
No Yes Streptomyces collinus Tu 365   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   1 1
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Actinoplanes friuliensis DSM 7358   1 1
No Yes Rhodococcus pyridinivorans SB3094   1 1
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   2 2
No Yes Mycobacterium abscessus subsp. bolletii 50594   1 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Corynebacterium terpenotabidum Y-11   1 1
No Yes Sorangium cellulosum So0157-2   2 1
No Yes Burkholderia phenoliruptrix BR3459a   3 2
No Yes Pandoraea pnomenusa 3kgm   2 2
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia sp. YI23   2 2
No Yes Burkholderia sp. CCGE1003   2 1
No Yes Burkholderia sp. CCGE1001   3 2
No Yes Burkholderia sp. KJ006   3 2
No Yes Burkholderia thailandensis MSMB121   3 2
No Yes Burkholderia pseudomallei MSHR305   3 2
No Yes Burkholderia pseudomallei NCTC 13179   3 2
No Yes Burkholderia pseudomallei BPC006   3 2
No Yes Burkholderia pseudomallei 1026b   3 2
No Yes Burkholderia pseudomallei MSHR346   3 2
No Yes Burkholderia pseudomallei 668   3 2
No Yes Burkholderia pseudomallei 1710b   3 2
No Yes Burkholderia pseudomallei K96243   3 2
No Yes Burkholderia mallei NCTC 10229   3 2
No Yes Burkholderia mallei NCTC 10247   3 2
No Yes Burkholderia mallei ATCC 23344   3 2
No Yes Burkholderia lata   3 2
No Yes Burkholderia ambifaria MC40-6   2 2
No Yes Burkholderia cenocepacia MC0-3   3 2
No Yes Burkholderia cenocepacia AU 1054   3 2
No Yes Burkholderia cenocepacia J2315   3 2
No Yes Burkholderia multivorans ATCC 17616   3 2
No Yes Burkholderia cepacia GG4   3 2
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Vibrio nigripulchritudo VibrioScope   2 1
No Yes Alcanivorax dieselolei B5   1 1
No Yes Thalassolituus oleivorans MIL-1   2 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   2 1
No Yes Pseudomonas syringae pv. syringae B728a   2 1
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   1 1
No Yes Pseudomonas protegens CHA0   2 1
No Yes Pseudomonas poae RE*1-1-14   2 1
No Yes Pseudomonas fluorescens F113   2 1
No Yes Pseudomonas fluorescens A506   2 1
No Yes Pseudomonas fluorescens R124   2 1
No Yes Pseudomonas fluorescens Pf0-1   2 1
No Yes Pseudomonas aeruginosa SCV20265   2 1
No Yes Pseudomonas aeruginosa MTB-1   2 1
No Yes Pseudomonas aeruginosa LES431   2 1
No Yes Pseudomonas aeruginosa RP73   2 1
No Yes Pseudomonas aeruginosa B136-33   2 1
No Yes Pseudomonas aeruginosa PA1R   2 1
No Yes Pseudomonas aeruginosa PA1   2 1
No Yes Pseudomonas aeruginosa DK2   2 1
No Yes Pseudomonas aeruginosa NCGM2.S1   2 1
No Yes Pseudomonas aeruginosa M18   2 1
No Yes Pseudomonas aeruginosa LESB58   2 1
No Yes Pseudomonas aeruginosa PA7   2 1
No Yes Pseudomonas aeruginosa PAO1   2 1
No Yes Acinetobacter genomosp. 13TU RUH2624   2 1
No Yes Acinetobacter sp. SH024   2 1
No Yes Acinetobacter calcoaceticus ruh2202   2 1
No Yes Acinetobacter baumannii ZW85-1   2 1
No Yes Acinetobacter baumannii TYTH-1   2 1
No Yes Acinetobacter baumannii BJAB0868   2 1
No Yes Acinetobacter baumannii BJAB0715   2 1
No Yes Acinetobacter baumannii BJAB07104   2 1
No Yes Acinetobacter baumannii TCDC-AB0715   2 1
No Yes Acinetobacter baumannii D1279779   2 1
No Yes Acinetobacter baumannii MDR-TJ   2 1
No Yes Acinetobacter baumannii 1656-2   2 1
No Yes Acinetobacter baumannii ATCC 19606   2 1
No Yes Acinetobacter baumannii AB307-0294   2 1
No Yes Acinetobacter baumannii AYE   2 1
No Yes Acinetobacter baumannii SDF   2 1
No Yes Acinetobacter baumannii MDR-ZJ06   2 1
No Yes Acinetobacter baumannii AB0057   2 1
No Yes Acinetobacter baumannii ACICU   2 1
No Yes Acinetobacter junii SH205   4 2
No Yes Acinetobacter lwoffii SH145   2 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1 1
No Yes Homo sapiens (NCBI version) Human 1 1
No Yes Homo sapiens 69_37 Human 1 1
No Yes Otolemur garnettii 69_3 Small-eared galago 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 69_5 Platypus 2 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 1 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 1 1
No Yes Latimeria chalumnae 69_1 Coelacanth 1 1
No Yes Gadus morhua 69_1 Atlantic cod 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 2 1
No Yes Oryzias latipes 69_1 Japanese medaka 2 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 1
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 2 1
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 2 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   1 1
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   3 2
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   4 2
No Yes NCBI 2017_08 genome   22796 14211
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   2 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   5 3
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   229 151
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   5494 3533
No Yes Global Ocean Sampling Expedition (GOS)   383 327
No Yes NCBI plasmid sequences (Plasmids)   7 7
No Yes PDB chains (SCOP 1.75) (PDB)   4 2
No Yes Protein Data Bank (all PDB sequenc)   6 3
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   18 18
No Yes TargetDB (Targets)   5 3

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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