SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > PDB chains (SCOP 1.75) > Salicylic acid carboxyl methyltransferase (SAMT) domains


Salicylic acid carboxyl methyltransferase (SAMT) family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1m6eX   4.6e-191   0.000000000776   5-357   1m6e X:  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Salicylic acid carboxyl methyltransferase (SAMT) domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   6917 6917
No Yes Selaginella moellendorffii   9 9
No Yes Pinus taeda Loblolly pine 40 36
No Yes Picea abies Norway spruce 36 36
No Yes Eucalyptus grandis v201 Rose gum 55 55
No Yes Theobroma cacao B97-61/B2 v1 Cacao 28 27
No Yes Gossypium raimondii v221   22 22
No Yes Citrus clementina v165   34 34
No Yes Citrus sinensis v154 Sweet orange 27 27
No Yes Thellungiella halophila v173   26 26
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 35 35
No Yes Capsella rubella v183   23 23
No Yes Arabidopsis lyrata Lyrate rockcress 18 18
No Yes Arabidopsis thaliana 10 Thale cress 29 29
No Yes Carica papaya Papaya 18 18
No Yes Medicago truncatula Barrel medic 23 23
No Yes Phaseolus vulgaris v186 French bean 22 22
No Yes Glycine max v109 Soybean 30 30
No Yes Cucumis sativus v122 Cucumber 15 15
No Yes Fragaria vesca Wild strawberry 17 15
No Yes Malus domestica v196 Apple 45 45
No Yes Prunus persica v139 Peach 25 24
No Yes Linum usitatissimum v200 Flax 12 12
No Yes Manihot esculenta v147 Cassava 24 24
No Yes Populus trichocarpa v156 Black cottonwood 28 28
No Yes Vitis vinifera Wine grape 33 32
No Yes Mimulus guttatus v140 Spotted monkey flower 21 21
No Yes Solanum lycopersicum v.2.3 Tomato 19 19
No Yes Solanum tuberosum Potato 26 26
No Yes Actinidia chinensis Hongyang   15 13
No Yes Aquilegia coerulea v195   24 24
No Yes Triticum urartu 22   19 19
No Yes Triticum aestivum 22 Bread wheat 44 44
No Yes Aegilops tauschii 22   28 28
No Yes Brachypodium distachyon Stiff brome 14 14
No Yes Oryza barthii 22 African wild rice 37 29
No Yes Oryza meridionalis 22   29 23
No Yes Oryza glumaepatula 22   46 37
No Yes Oryza glaberrima African rice 32 32
No Yes Oryza punctata 22   33 26
No Yes Oryza nivara 22   35 33
No Yes Oryza brachyantha 22 Malo sina 18 18
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 39 39
No Yes Oryza sativa v193 Rice 39 39
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 13 13
No Yes Panicum virgatum v202 Switchgrass 31 31
No Yes Setaria italica v164 Foxtail millet 16 16
No Yes Zea mays subsp. mays Maize 14 14
No Yes Zea mays v181 Maize 15 15
No Yes Sorghum bicolor Sorghum 18 18
No Yes Musa balbisiana Balbis banana 15 14
No Yes Musa acuminata 22 Wild Malaysian banana 18 18
No Yes Amborella trichopoda 22   11 11
No Yes Physcomitrella patens   2 2
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 30 30
No Yes Hordeum vulgare 22 Domesticated barley 27 27
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 29 29
No Yes Picea sitchensis (Incomplete) Sitka spruce 3 3
No Yes Lotus japonicus (Early assembly)   12 12
No Yes Malus x domestica (Duplicate) Apple 45 45
No Yes Ricinus communis (Early assembly) Castor bean 15 15
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   19 19
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 18 18
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 19 19
No Yes Phoenix dactylifera (Early draft) Date palm 3 3
No Yes Arabidopsis thaliana 10 Thale cress 24 24
No Yes NCBI 2017_08 genome   1870 1860
No Yes STRING v9.0.5 (STRING)   196 195
No Yes Uniprot 2018_03 genome   2554 2489
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   1 1
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   22 22
No Yes TargetDB (Targets)   23 23

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.