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Atu1826-like family domain assignments
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PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
2fukA   1.22e-47   0.00000000538   11-216   2fuk A:3-220  
2i3dA   6.37e-51   0.0000000033   26-235   2i3d A:2-219  

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Select to display   Genome       Domains   Proteins
No Yes ALL   17221 17221
No Yes Caenorhabditis japonica   1 1
No Yes Trichoplax adhaerens   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Acidithiobacillus ferrivorans SS3   1 1
No Yes Acidithiobacillus caldus SM-1   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 53993   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Laribacter hongkongensis HLHK9   1 1
No Yes Methylibium petroleiphilum PM1   1 1
No Yes Thiomonas intermedia K12   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Burkholderia rhizoxinica HKI 454   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Cupriavidus necator N-1   1 1
No Yes Ralstonia eutropha H16   1 1
No Yes Ralstonia pickettii 12D   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia mallei SAVP1   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Thiobacillus denitrificans ATCC 25259   1 1
No Yes Sideroxydans lithotrophicus ES-1   1 1
No Yes Gallionella capsiferriformans ES-2   1 1
No Yes Parvularcula bermudensis HTCC2503   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Sphingobium sp. SYK-6   1 1
No Yes Sphingobium japonicum UT26S   1 1
No Yes Sphingobium chlorophenolicum L-1   1 1
No Yes Sphingomonas sp. MM-1   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Zymomonas mobilis subsp. mobilis NCIMB 11163   1 1
No Yes Maricaulis maris MCS10   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Pseudovibrio sp. FO-BEG1   1 1
No Yes Jannaschia sp. CCS1   1 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Roseobacter litoralis Och 149   1 1
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Rhodospirillum photometricum DSM 122   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Rhodospirillum centenum SW   1 1
No Yes Rhodospirillum rubrum F11   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum sp. B510   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Gluconacetobacter xylinus NBRC 3288   1 1
No Yes Granulibacter bethesdensis CGDNIH1   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Gluconobacter oxydans 621H   1 1
No Yes Acetobacter pasteurianus IFO 3283-01   1 1
No Yes Polymorphum gilvum SL003B-26A1   1 1
No Yes Micavibrio aeruginosavorus ARL-13   1 1
No Yes Candidatus Puniceispirillum marinum IMCC1322   1 1
No Yes alpha proteobacterium HIMB5   1 1
No Yes alpha proteobacterium HIMB59   1 1
No Yes Candidatus Pelagibacter sp. IMCC9063   1 1
No Yes Candidatus Midichloria mitochondrii IricVA   1 1
No Yes Neorickettsia sennetsu str. Miyayama   1 1
No Yes Neorickettsia risticii str. Illinois   1 1
No Yes Wolbachia endosymbiont of Culex quinquefasciatus Pel   1 1
No Yes Wolbachia sp. wRi   1 1
No Yes Ehrlichia chaffeensis str. Arkansas   1 1
No Yes Ehrlichia canis str. Jake   1 1
No Yes Ehrlichia ruminantium str. Gardel   1 1
No Yes Anaplasma phagocytophilum HZ   1 1
No Yes Anaplasma marginale str. Florida   1 1
No Yes Anaplasma centrale str. Israel   1 1
No Yes Orientia tsutsugamushi str. Boryong   1 1
No Yes Rickettsia bellii OSU 85-389   1 1
No Yes Rickettsia canadensis str. McKiel   1 1
No Yes Rickettsia typhi str. Wilmington   1 1
No Yes Rickettsia prowazekii str. BuV67-CWPP   1 1
No Yes Rickettsia philipii str. 364D   1 1
No Yes Rickettsia heilongjiangensis 054   1 1
No Yes Rickettsia peacockii str. Rustic   1 1
No Yes Rickettsia felis URRWXCal2   1 1
No Yes Rickettsia slovaca 13-B   1 1
No Yes Rickettsia parkeri str. Portsmouth   1 1
No Yes Rickettsia massiliae MTU5   1 1
No Yes Rickettsia japonica YH   1 1
No Yes Rickettsia africae ESF-5   1 1
No Yes Rickettsia rhipicephali str. 3-7-female6-CWPP   1 1
No Yes Rickettsia montanensis str. OSU 85-930   1 1
No Yes Candidatus Rickettsia amblyommii str. GAT-30V   1 1
No Yes Rickettsia australis str. Cutlack   1 1
No Yes Rickettsia akari str. Hartford   1 1
No Yes Rickettsia rickettsii str. 'Sheila Smith'   1 1
No Yes Rickettsia conorii str. Malish 7   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Azorhizobium caulinodans ORS 571   1 1
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium extorquens AM1   1 1
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Ochrobactrum anthropi ATCC 49188   1 1
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella ovis ATCC 25840   1 1
No Yes Brucella abortus S19   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium radiobacter K84   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Candidatus Liberibacter asiaticus str. psy62   1 1
No Yes Mesorhizobium sp. BNC1   1 1
No Yes Mesorhizobium opportunistum WSM2075   1 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   1 1
No Yes Methylocella silvestris BL2   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Hyphomicrobium sp. MC1   1 1
No Yes Hyphomicrobium denitrificans ATCC 51888   1 1
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Nitrobacter winogradskyi Nb-255   1 1
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Methylocystis sp. SC2   1 1
No Yes Bartonella tribocorum CIP 105476   1 1
No Yes Bartonella clarridgeiae 73   1 1
No Yes Bartonella henselae str. Houston-1   1 1
No Yes Bartonella grahamii as4aup   1 1
No Yes Bartonella quintana str. Toulouse   1 1
No Yes Bartonella bacilliformis KC583   1 1
No Yes Cellvibrio japonicus Ueda107   1 1
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Alcanivorax borkumensis SK2   1 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Frateuria aurantia DSM 6220   1 1
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Stenotrophomonas maltophilia K279a   1 1
No Yes Xylella fastidiosa M23   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas albilineans GPE PC73   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Coxiella burnetii Dugway 5J108-111   1 1
No Yes Legionella longbeachae NSW150   1 1
No Yes Legionella pneumophila str. Corby   1 1
No Yes gamma proteobacterium HdN1   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas fulva 12-X   1 1
No Yes Pseudomonas putida F1   1 1
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas mendocina ymp   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Thiomicrospira crunogena XCL-2   1 1
No Yes Thioalkalimicrobium cyclicum ALM1   1 1
No Yes Francisella sp. TX077308   1 1
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   1 1
No Yes Francisella tularensis subsp. tularensis WY96-3418   1 1
No Yes Francisella cf. novicida 3523   1 1
No Yes Francisella novicida U112   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 23270   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Burkholderia lata   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia cepacia GG4   1 1
No Yes Sulfuricella denitrificans skB26   1 1
No Yes Caulobacter crescentus CB15   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 29191   1 1
No Yes Zymomonas mobilis subsp. mobilis CP4   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 10988   1 1
No Yes Zymomonas mobilis subsp. mobilis ZM4   1 1
No Yes Zymomonas mobilis subsp. pomaceae ATCC 29192   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Octadecabacter antarcticus 307   1 1
No Yes Octadecabacter arcticus 238   1 1
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Paracoccus aminophilus JCM 7686   1 1
No Yes Candidatus Endolissoclinum faulkneri L2   1 1
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   1 1
No Yes Rhodospirillum rubrum ATCC 11170   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans H24   1 1
No Yes Acetobacter pasteurianus 386B   1 1
No Yes Acetobacter pasteurianus IFO 3283-12   1 1
No Yes Acetobacter pasteurianus IFO 3283-01-42C   1 1
No Yes Acetobacter pasteurianus IFO 3283-32   1 1
No Yes Acetobacter pasteurianus IFO 3283-26   1 1
No Yes Acetobacter pasteurianus IFO 3283-22   1 1
No Yes Acetobacter pasteurianus IFO 3283-07   1 1
No Yes Acetobacter pasteurianus IFO 3283-03   1 1
No Yes Micavibrio aeruginosavorus EPB   1 1
No Yes Candidatus Pelagibacter ubique HTCC1062   1 1
No Yes Wolbachia endosymbiont of Drosophila melanogaster   1 1
No Yes Wolbachia endosymbiont of Onchocerca ochengi str. Adamawa_Cameroon   1 1
No Yes Wolbachia endosymbiont strain TRS of Brugia malayi   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wHa   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wNo   1 1
No Yes Ehrlichia muris AS145   1 1
No Yes Ehrlichia ruminantium str. Welgevonden   1 1
No Yes Ehrlichia ruminantium str. Welgevonden   1 1
No Yes Anaplasma phagocytophilum str. Dog2   1 1
No Yes Anaplasma phagocytophilum str. HZ2   1 1
No Yes Anaplasma phagocytophilum str. JM   1 1
No Yes Anaplasma marginale str. Dawn   1 1
No Yes Anaplasma marginale str. Gypsy Plains   1 1
No Yes Anaplasma marginale str. St. Maries   1 1
No Yes Orientia tsutsugamushi str. Ikeda   1 1
No Yes Rickettsia bellii RML369-C   1 1
No Yes Rickettsia canadensis str. CA410   1 1
No Yes Rickettsia typhi str. B9991CWPP   1 1
No Yes Rickettsia typhi str. TH1527   1 1
No Yes Rickettsia prowazekii str. Breinl   1 1
No Yes Rickettsia prowazekii str. NMRC Madrid E   1 1
No Yes Rickettsia prowazekii str. RpGvF24   1 1
No Yes Rickettsia prowazekii str. GvV257   1 1
No Yes Rickettsia prowazekii str. Dachau   1 1
No Yes Rickettsia prowazekii str. Katsinyian   1 1
No Yes Rickettsia prowazekii str. Chernikova   1 1
No Yes Rickettsia prowazekii Rp22   1 1
No Yes Rickettsia prowazekii str. Madrid E   1 1
No Yes Rickettsia slovaca str. D-CWPP   1 1
No Yes Rickettsia massiliae str. AZT80   1 1
No Yes Rickettsia rickettsii str. Arizona   1 1
No Yes Rickettsia rickettsii str. Brazil   1 1
No Yes Rickettsia rickettsii str. Hauke   1 1
No Yes Rickettsia rickettsii str. Colombia   1 1
No Yes Rickettsia rickettsii str. Hlp#2   1 1
No Yes Rickettsia rickettsii str. Hino   1 1
No Yes Rickettsia rickettsii str. Iowa   1 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Brucella ceti TE10759-12   1 1
No Yes Brucella ceti TE28753-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   1 1
No Yes Brucella melitensis M5-90   1 1
No Yes Brucella melitensis M28   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Brucella abortus A13334   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Liberibacter crescens BT-1   1 1
No Yes Candidatus Liberibacter solanacearum CLso-ZC1   1 1
No Yes Candidatus Liberibacter americanus str. Sao Paulo   1 1
No Yes Candidatus Liberibacter asiaticus str. gxpsy   1 1
No Yes Mesorhizobium australicum WSM2073   1 1
No Yes Hyphomicrobium nitrativorans NL23   1 1
No Yes Hyphomicrobium denitrificans 1NES1   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Bartonella australis Aust/NH1   1 1
No Yes Bartonella vinsonii subsp. berkhoffii str. Winnie   1 1
No Yes Bartonella quintana RM-11   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Alcanivorax dieselolei B5   1 1
No Yes Stenotrophomonas maltophilia D457   1 1
No Yes Stenotrophomonas maltophilia JV3   1 1
No Yes Stenotrophomonas maltophilia R551-3   1 1
No Yes Xylella fastidiosa M12   1 1
No Yes Xylella fastidiosa Temecula1   1 1
No Yes Xylella fastidiosa 9a5c   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Coxiella burnetii CbuK_Q154   1 1
No Yes Coxiella burnetii CbuG_Q212   1 1
No Yes Coxiella burnetii RSA 331   1 1
No Yes Coxiella burnetii RSA 493   1 1
No Yes Legionella pneumophila str. Paris   1 1
No Yes Legionella pneumophila str. Lens   1 1
No Yes Legionella pneumophila subsp. pneumophila LPE509   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   1 1
No Yes Legionella pneumophila 2300/99 Alcoy   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Pseudomonas putida H8234   1 1
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida DOT-T1E   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   1 1
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Pseudomonas mendocina NK-01   1 1
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Francisella noatunensis subsp. orientalis LADL--07-285A   1 1
No Yes Francisella tularensis subsp. mediasiatica FSC147   1 1
No Yes Francisella tularensis subsp. holarctica F92   1 1
No Yes Francisella tularensis subsp. holarctica FTNF002-00   1 1
No Yes Francisella tularensis subsp. holarctica OSU18   1 1
No Yes Francisella tularensis subsp. holarctica LVS   1 1
No Yes Francisella tularensis subsp. holarctica FSC200   1 1
No Yes Francisella tularensis subsp. tularensis TIGB03   1 1
No Yes Francisella tularensis subsp. tularensis TI0902   1 1
No Yes Francisella tularensis subsp. tularensis NE061598   1 1
No Yes Francisella tularensis subsp. tularensis FSC198   1 1
No Yes Francisella tularensis subsp. tularensis SCHU S4   1 1
No Yes Francisella cf. novicida Fx1   1 1
No Yes Wolbachia endosymbiont of Brugia malayi v1.0 (Broad Institute)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   3 3
No Yes Combined (meta-genome)   2 2
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   2 2
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   4 4
No Yes Dump bottom (Dump bottom) (meta-genome)   25 25
No Yes Dump top (Dump top) (meta-genome)   12 12
No Yes Endophytic microbiome from Rice (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   11177 11176
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   7 7
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   4 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   7 7
No Yes Sludge/US, Jazz Assembly (meta-genome)   2 2
No Yes Sludge/US, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   10 10
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   209 209
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   5 5
No Yes Uniprot 2018_03 genome   3996 3995
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   3 3
No Yes Global Ocean Sampling Expedition (GOS)   952 952
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   11 11
No Yes TargetDB (Targets)   3 3

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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