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DsrA/DsrB N-terminal-domain-like family domain assignments
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PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 4 significant domains in 4 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
2v4jA   3.16e-74   0.0000000215   3-167   2v4j A:2-167  
2v4jB   4.39e-57   0.000000694   2-142   2v4j B:2-135  
3c7bA   1.61e-73   0.0000000206   2-166   3c7b A:1-166  
3c7bB   1.1e-45   0.000000817   4-122   3c7b B:4-122  

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View all assignments containing a DsrA/DsrB N-terminal-domain-like domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   9540 9540
No Yes Candidatus Desulforudis audaxviator MP104C   2 2
No Yes Desulfosporosinus acidiphilus SJ4   2 2
No Yes Desulfosporosinus orientis DSM 765   2 2
No Yes Desulfitobacterium hafniense Y51   2 2
No Yes Desulfitobacterium dehalogenans ATCC 51507   2 2
No Yes Desulfotomaculum reducens MI-1   2 2
No Yes Desulfotomaculum acetoxidans DSM 771   2 2
No Yes Desulfotomaculum kuznetsovii DSM 6115   2 2
No Yes Desulfotomaculum carboxydivorans CO-1-SRB   2 2
No Yes Desulfotomaculum ruminis DSM 2154   4 4
No Yes Thermodesulfobium narugense DSM 14796   2 2
No Yes Carboxydothermus hydrogenoformans Z-2901   2 2
No Yes Moorella thermoacetica ATCC 39073   2 2
No Yes Ammonifex degensii KC4   2 2
No Yes Pelodictyon phaeoclathratiforme BU-1   2 2
No Yes Chlorobium luteolum DSM 273   2 2
No Yes Chlorobium chlorochromatii CaD3   2 2
No Yes Chlorobium phaeobacteroides DSM 266   2 2
No Yes Chlorobium phaeovibrioides DSM 265   2 2
No Yes Chlorobium limicola DSM 245   2 2
No Yes Chlorobaculum parvum NCIB 8327   2 2
No Yes Chlorobium tepidum TLS   3 3
No Yes Prosthecochloris aestuarii DSM 271   2 2
No Yes Thermodesulfatator indicus DSM 15286   2 2
No Yes Thermodesulfobacterium sp. OPB45   2 2
No Yes Thermodesulfovibrio yellowstonii DSM 11347   2 2
No Yes Desulfarculus baarsii DSM 2075   2 2
No Yes Desulfobacca acetoxidans DSM 11109   2 2
No Yes Desulfomonile tiedjei DSM 6799   2 2
No Yes Syntrophobacter fumaroxidans MPOB   2 2
No Yes Desulfurivibrio alkaliphilus AHT2   2 2
No Yes Desulfotalea psychrophila LSv54   2 2
No Yes Desulfobulbus propionicus DSM 2032   2 2
No Yes Desulfatibacillum alkenivorans AK-01   2 2
No Yes Desulfobacterium autotrophicum HRM2   2 2
No Yes Desulfococcus oleovorans Hxd3   2 2
No Yes Desulfohalobium retbaense DSM 5692   2 2
No Yes Desulfomicrobium baculatum DSM 4028   2 2
No Yes Desulfovibrio piezophilus   2 2
No Yes Desulfovibrio aespoeensis Aspo-2   2 2
No Yes Desulfovibrio magneticus RS-1   2 2
No Yes Desulfovibrio alaskensis G20   2 2
No Yes Desulfovibrio vulgaris subsp. vulgaris DP4   2 2
No Yes Desulfovibrio salexigens DSM 2638   2 2
No Yes Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774   4 4
No Yes Desulfovibrio africanus str. Walvis Bay   2 2
No Yes Thiobacillus denitrificans ATCC 25259   3 3
No Yes Sideroxydans lithotrophicus ES-1   2 2
No Yes Magnetococcus marinus MC-1   2 2
No Yes Magnetospirillum magneticum AMB-1   2 2
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Alkalilimnicola ehrlichii MLHE-1   2 2
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   2 2
No Yes Halorhodospira halophila SL1   1 1
No Yes Allochromatium vinosum DSM 180   2 2
No Yes Thiocystis violascens DSM 198   2 2
No Yes Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)   1 1
No Yes Candidatus Vesicomyosocius okutanii HA   1 1
No Yes Archaeoglobus profundus DSM 5631   2 2
No Yes Archaeoglobus veneficus SNP6   2 2
No Yes Archaeoglobus fulgidus DSM 4304   2 2
No Yes Gordonibacter pamelaeae 7-10-1-b   2 2
No Yes Desulfosporosinus meridiei DSM 13257   2 2
No Yes Desulfitobacterium dichloroeliminans LMG P-21439   2 2
No Yes Desulfitobacterium hafniense DCB-2   2 2
No Yes Desulfotomaculum gibsoniae DSM 7213   2 2
No Yes Chlorobium phaeobacteroides BS1   2 2
No Yes Desulfocapsa sulfexigens DSM 10523   2 2
No Yes Desulfobacula toluolica Tol2   2 2
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   4 4
No Yes Desulfovibrio vulgaris RCH1   2 2
No Yes Desulfovibrio vulgaris str. 'Miyazaki F'   2 2
No Yes Desulfovibrio vulgaris str. Hildenborough   2 2
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   2 2
No Yes Desulfovibrio desulfuricans ND132   2 2
No Yes Sulfuricella denitrificans skB26   3 3
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   2 2
No Yes Thioalkalivibrio nitratireducens DSM 14787   3 3
No Yes Thioflavicoccus mobilis 8321   2 2
No Yes Archaeoglobus sulfaticallidus PM70-1   2 2
No Yes 1_050719N (meta-genome)   1 1
No Yes Bath Hot Springs, filamentous community (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   780 780
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   2 2
No Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma1 (meta-genome)   2 2
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   2 2
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   14 14
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   85 85
No Yes Termite Protist Endosymbiont Community (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   8097 8097
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   44 44
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   48 48
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   86 86
No Yes TargetDB (Targets)   7 7

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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