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Serine carboxypeptidase-like family domain assignments
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PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 13 significant domains in 13 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1ac5A   1.83e-125   0.0000000000004   14-454   1ac5 A:  
1bcsA   2.3e-131   0.000000000218   9-258   1wht A:,B:  
1bcsB   2.04e-65   0.0000000881   4-149   1wht A:,B:  
1cpyA   1.06e-182   0.000000000000265   11-417   1wpx A:1-421  
1gxsA   1.43e-110   0.000000000185   6-264   1gxs A:,B:  
1gxsB   5.81e-62   0.000000108   3-152   1gxs A:,B:  
1ivyA   3.87e-189   0.000000000000345   5-253,300-448   1ivy A:  
1whsA   2.06e-131   0.000000000218   4-253   1wht A:,B:  
1whtA   2.11e-131   0.000000000218   5-254   1wht A:,B:  
1whtB   1.91e-65   0.0000000881   2-147   1wht A:,B:  
1wpxA   2.68e-187   0.000000000000241   11-417   1wpx A:1-421  
3sc2A   3.32e-131   0.000000000245   9-258   1wht A:,B:  
3sc2B   1.87e-65   0.0000000881   2-147   1wht A:,B:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   32584 32584
No Yes Homo sapiens 76_38 Human 14 14
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 2 2
No Yes Pongo abelii 76_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 3 3
No Yes Papio anubis 76 Olive baboon 2 2
No Yes Macaca mulatta 76_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 5 5
No Yes Otolemur garnettii 76_3 Small-eared galago 3 3
No Yes Microcebus murinus 76_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 7 7
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 2 2
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 2 2
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 3 3
No Yes Oryctolagus cuniculus 76_2 Rabbit 2 2
No Yes Ochotona princeps 76 American pika 3 2
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 2 2
No Yes Bos taurus 76_3.1 Cattle 3 3
No Yes Ovis aries 76_3.1 Sheep 3 3
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 2 2
No Yes Canis familiaris 76_3.1 Dog 3 3
No Yes Felis catus 76_6.2 Domestic cat 2 2
No Yes Equus caballus 76_2 Horse 2 2
No Yes Myotis lucifugus 76_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 76_1 Large flying fox 2 2
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Procavia capensis 76_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 3 3
No Yes Echinops telfairi 76 Small Madagascar hedgehog 2 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 5 5
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 2 2
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 3 3
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 3 3
No Yes Ornithorhynchus anatinus 76_5 Platypus 2 2
No Yes Saccoglossus kowalevskii v3.0   5 4
No Yes Petromyzon marinus 76_7.0 Sea lamprey 4 4
No Yes Meleagris gallopavo 76_2 Turkey 1 1
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 4 4
No Yes Anolis carolinensis 76_2.0 Green anole 4 4
No Yes Xenopus laevis African clawed frog 6 6
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 3 3
No Yes Latimeria chalumnae 76_1 Coelacanth 5 5
No Yes Lepisosteus oculatus 76 Spotted gar 6 6
No Yes Gadus morhua 76_1 Atlantic cod 3 3
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 4 4
No Yes Takifugu rubripes 76_4 Torafugu 7 7
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 11 11
No Yes Oryzias latipes 76_1 Japanese medaka 6 6
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 3 3
No Yes Poecilia formosa 76 Amazon molly 3 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 3 3
No Yes Astyanax mexicanus 76 Mexican tetra 3 3
No Yes Danio rerio 76_9 Zebrafish 4 4
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 10 10
No Yes Ciona intestinalis 76 Vase tunicate 3 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 6 6
No Yes Adineta vaga   14 14
No Yes Octopus bimaculoides 280   2 2
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Lottia gigantea Owl limpet 5 5
No Yes Helobdella robusta   2 2
No Yes Capitella sp. I   11 11
No Yes Danaus plexippus OGS1.0 Monarch butterfly 5 5
No Yes Heliconius melpomene Postman butterfly 4 4
No Yes Bombyx mori Domestic silkworm 3 3
No Yes Nasonia vitripennis Jewel wasp 6 6
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 1 1
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 2
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 3 3
No Yes Lucilia cuprina Australian sheep blowfly 3 3
No Yes Drosophila grimshawi 1.3   2 2
No Yes Drosophila willistoni 1.3   3 3
No Yes Drosophila pseudoobscura 2.13   2 2
No Yes Drosophila persimilis 1.3   2 2
No Yes Drosophila suzukii   5 5
No Yes Drosophila yakuba 1.3   3 3
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   2 2
No Yes Drosophila melanogaster 76_5 Fruit fly 4 4
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   2 2
No Yes Drosophila virilis 1.2   3 3
No Yes Drosophila mojavensis 1.3   3 3
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 4 4
No Yes Culex pipiens quinquefasciatus Southern house mosquito 3 3
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 2
No Yes Tribolium castaneum 3.0 Red flour beetle 2 2
No Yes Pediculus humanus corporis (Early assembly) Human body louse 4 4
No Yes Acyrthosiphon pisum Pea aphid 5 5
No Yes Rhodnius prolixus 22   6 6
No Yes Strigamia maritima 22   1 1
No Yes Sarcoptes scabiei   2 2
No Yes Tetranychus urticae Two-spotted spider mite 5 5
No Yes Ixodes scapularis (Preliminary) Black-legged tick 10 10
No Yes Pristionchus pacificus   38 16
No Yes Meloidogyne incognita Southern root-knot nematode 13 12
No Yes Meloidogyne hapla   4 4
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 3 3
No Yes Caenorhabditis japonica   14 8
No Yes Caenorhabditis brenneri   16 10
No Yes Caenorhabditis remanei   14 8
No Yes Caenorhabditis elegans 76_235 Roundworm 20 14
No Yes Caenorhabditis briggsae 2   15 9
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   1 1
No Yes Echinococcus granulosus   1 1
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   2 2
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   7 6
No Yes Trichoplax adhaerens   11 11
No Yes Proterospongia sp. ATCC 50818   6 6
No Yes Monosiga brevicollis   6 6
No Yes Sphaeroforma arctica JP610   3 3
No Yes Capsaspora owczarzaki ATCC 30864   5 5
No Yes Conidiobolus coronatus NRRL28638 v1.0   10 10
No Yes Mortierella verticillata NRRL 6337   4 4
No Yes Phycomyces blakesleeanus   7 7
No Yes Rhizopus oryzae RA 99-880   6 6
No Yes Mucor circinelloides   5 5
No Yes Rhizomucor miehei CAU432   4 4
No Yes Malassezia globosa CBS 7966   4 4
No Yes Sporisorium reilianum 22   6 6
No Yes Ustilago maydis   6 6
No Yes Mixia osmundae IAM 14324 v1.0   6 6
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   9 9
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   7 7
No Yes Melampsora laricis-populina   8 8
No Yes Rhodotorula graminis WP1 v1.0   4 4
No Yes Sporobolomyces roseus IAM 13481   4 4
No Yes Microbotryum violaceum 22   7 7
No Yes Wallemia sebi v1.0   2 2
No Yes Sphaerobolus stellatus v1.0   25 25
No Yes Piloderma croceum F 1598 v1.0   12 12
No Yes Serpula lacrymans var. lacrymans S7.9   11 11
No Yes Coniophora puteana   11 11
No Yes Hydnomerulius pinastri v2.0   6 6
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   4 4
No Yes Pisolithus microcarpus 441 v1.0   4 4
No Yes Pisolithus tinctorius Marx 270 v1.0   8 8
No Yes Scleroderma citrinum Foug A v1.0   9 9
No Yes Coprinopsis cinerea okayama7 130 v3   3 3
No Yes Pleurotus ostreatus Oyster mushroom 9 9
No Yes Amanita thiersii Skay4041 v1.0   14 14
No Yes Amanita muscaria Koide v1.0 Fly agaric 10 10
No Yes Galerina marginata v1.0   14 14
No Yes Hebeloma cylindrosporum h7 v2.0   8 8
No Yes Laccaria bicolor S238N-H82   7 7
No Yes Agaricus bisporus var. bisporus   12 12
No Yes Schizophyllum commune   10 10
No Yes Stereum hirsutum FP-91666 SS1 v1.0   10 10
No Yes Heterobasidion annosum   7 7
No Yes Gloeophyllum trabeumv1.0   10 10
No Yes Punctularia strigosozonata v1.0   16 16
No Yes Sebacina vermifera MAFF 305830 v1.0   4 4
No Yes Fomitiporia mediterranea v1.0   13 12
No Yes Tulasnella calospora AL13/4D v1.0   4 4
No Yes Postia placenta   18 18
No Yes Wolfiporia cocos MD-104 SS10 v1.0   9 9
No Yes Fomitopsis pinicolav1.0   6 6
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   6 6
No Yes Phanerochaete chrysosporium RP-78 2.1   15 15
No Yes Dichomitus squalens   16 16
No Yes Trametes versicolor v1.0   17 17
No Yes Tremella mesenterica Witches' butter 3 3
No Yes Daldinia eschscholzii EC12 v1.0   9 9
No Yes Apiospora montagnei NRRL 25634 v1.0   14 14
No Yes Magnaporthe poae ATCC 64411 22   5 5
No Yes Magnaporthe grisea 70-15   6 6
No Yes Podospora anserina   4 4
No Yes Sporotrichum thermophile ATCC 42464   3 3
No Yes Thielavia terrestris NRRL 8126   4 4
No Yes Chaetomium globosum CBS 148.51   4 4
No Yes Neurospora tetrasperma   4 4
No Yes Neurospora discreta FGSC 8579   3 3
No Yes Neurospora crassa OR74A   4 4
No Yes Cryphonectria parasitica Chestnut blight fungus 11 11
No Yes Verticillium albo-atrum VaMs.102   5 5
No Yes Verticillium dahliae VdLs.17   7 7
No Yes Acremonium alcalophilumv 1.0   4 4
No Yes Glomerella graminicola 22   8 8
No Yes Fusarium graminearum   8 8
No Yes Nectria haematococca mpVI   15 15
No Yes Fusarium oxysporum f. sp. lycopersici 4286   9 9
No Yes Fusarium verticillioides 7600   7 7
No Yes Trichoderma asperellum CBS 433.97 v1.0   6 6
No Yes Trichoderma atroviride   4 4
No Yes Trichoderma citrinoviride v1.0   5 5
No Yes Trichoderma reesei 1.2   4 4
No Yes Trichoderma virens Gv29-8   7 7
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   3 3
No Yes Trichoderma harzianum CBS 226.95 v1.0   5 5
No Yes Amorphotheca resinae v1.0 Creosote fungus 8 8
No Yes Botrytis cinerea B05.10   7 7
No Yes Sclerotinia sclerotiorum   9 9
No Yes Blumeria graminis 22   6 6
No Yes Didymella exigua CBS 183.55 v1.0   8 8
No Yes Leptosphaeria maculans 22   6 6
No Yes Setosphaeria turcica v1.0   11 11
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   11 11
No Yes Cochliobolus victoriae FI3 v1.0   11 11
No Yes Cochliobolus carbonum 26-R-13 v1.0   11 11
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 11 11
No Yes Alternaria brassicicola   9 9
No Yes Cochliobolus lunatus m118 v2.0   11 11
No Yes Pyrenophora teres f. teres 22   10 10
No Yes Pyrenophora tritici-repentis   9 9
No Yes Stagonospora nodorum   9 9
No Yes Mycosphaerella graminicola IPO323   13 13
No Yes Zasmidium cellare ATCC 36951 v1.0   14 14
No Yes Dothistroma septosporum   12 12
No Yes Septoria musiva v1.0   11 11
No Yes Mycosphaerella fijiensis CIRAD86   13 13
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   10 10
No Yes Paracoccidioides brasiliensis Pb18   4 4
No Yes Coccidioides posadasii RMSCC 3488   8 8
No Yes Coccidioides immitis RS   9 9
No Yes Ajellomyces dermatitidis SLH14081   7 7
No Yes Histoplasma capsulatum class NAmI strain WU24   4 4
No Yes Microsporum canis CBS 113480   10 10
No Yes Trichophyton equinum CBS 127.97   10 10
No Yes Trichophyton verrucosum HKI 0517   10 10
No Yes Arthroderma benhamiae CBS 112371   9 9
No Yes Trichophyton tonsurans CBS 112818   10 10
No Yes Trichophyton rubrum CBS 118892   11 11
No Yes Uncinocarpus reesii 1704   7 7
No Yes Aspergillus zonatus v1.0   7 7
No Yes Penicillium chrysogenum Wisconsin 54-1255   9 9
No Yes Penicillium chrysogenum v1.0   9 9
No Yes Aspergillus acidus v1.0   11 11
No Yes Aspergillus fumigatus Af293   11 11
No Yes Aspergillus brasiliensis v1.0   12 12
No Yes Aspergillus nidulans FGSC A4   5 5
No Yes Aspergillus sydowii v1.0   5 5
No Yes Aspergillus versicolor v1.0   8 8
No Yes Aspergillus glaucus   7 7
No Yes Aspergillus carbonarius ITEM 5010   11 11
No Yes Neosartorya fischeri NRRL 181   10 10
No Yes Aspergillus terreus NIH2624   10 10
No Yes Aspergillus tubingensis v1.0   13 13
No Yes Aspergillus wentii v1.0   9 9
No Yes Aspergillus oryzae RIB40   12 12
No Yes Aspergillus niger 22   12 12
No Yes Aspergillus niger ATCC 1015   8 8
No Yes Aspergillus flavus NRRL3357   11 11
No Yes Aspergillus clavatus NRRL 1   10 10
No Yes Penicillium marneffei ATCC 18224   7 7
No Yes Tuber melanosporum Mel28 22   3 3
No Yes Tuber melanosporum Vittad Perigord truffle 4 4
No Yes Hansenula polymorpha v2.0   3 3
No Yes Dekkera bruxellensis CBS 2499 v2.0   2 2
No Yes Pichia membranifaciensv1.0   3 3
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   4 4
No Yes Candida dubliniensis CD36   4 4
No Yes Candida tropicalis MYA-3404   4 4
No Yes Candida parapsilosis   7 7
No Yes Candida albicans SC5314   5 5
No Yes Lodderomyces elongisporus NRRL YB-4239   5 5
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   5 5
No Yes Pichia stipitis CBS 6054   4 4
No Yes Candida guilliermondii ATCC 6260   3 3
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   3 3
No Yes Debaromyces hansenii   3 3
No Yes Wickerhamomyces anomalus   3 3
No Yes Pichia pastoris GS115   3 3
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   3 3
No Yes Yarrowia lipolytica CLIB122   10 10
No Yes Candida lusitaniae ATCC 42720   3 3
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   4 4
No Yes Vanderwaltozyma polyspora DSM 70294   3 3
No Yes Candida glabrata CBS138   2 2
No Yes Kluyveromyces thermotolerans CBS 6340   3 3
No Yes Lachancea kluyveri   4 4
No Yes Kluyveromyces waltii   3 3
No Yes Ashbya gossypii ATCC 10895   3 3
No Yes Zygosaccharomyces rouxii   3 3
No Yes Saccharomyces mikatae MIT   3 3
No Yes Saccharomyces paradoxus MIT   3 3
No Yes Saccharomyces cerevisiae 76 Baker's yeast 3 3
No Yes Saccharomyces bayanus MIT   3 3
No Yes Kluyveromyces lactis   4 4
No Yes Schizosaccharomyces cryophilus OY26 22   2 2
No Yes Schizosaccharomyces octosporus yFS286   2 2
No Yes Schizosaccharomyces japonicus yFS275   2 2
No Yes Schizosaccharomyces pombe Fission yeast 3 3
No Yes Catenaria anguillulae PL171 v1.0   4 4
No Yes Allomyces macrogynus ATCC 38327   3 3
No Yes Spizellomyces punctatus DAOM BR117   3 3
No Yes Dictyostelium discoideum   3 3
No Yes Dictyostelium purpureum   2 2
No Yes Selaginella moellendorffii   36 36
No Yes Pinus taeda Loblolly pine 63 57
No Yes Picea abies Norway spruce 41 40
No Yes Eucalyptus grandis v201 Rose gum 121 121
No Yes Theobroma cacao B97-61/B2 v1 Cacao 40 39
No Yes Gossypium raimondii v221   115 113
No Yes Citrus clementina v165   50 50
No Yes Citrus sinensis v154 Sweet orange 64 64
No Yes Thellungiella halophila v173   53 53
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 53 53
No Yes Capsella rubella v183   48 48
No Yes Arabidopsis lyrata Lyrate rockcress 46 46
No Yes Arabidopsis thaliana 10 Thale cress 71 71
No Yes Carica papaya Papaya 23 23
No Yes Medicago truncatula Barrel medic 79 77
No Yes Phaseolus vulgaris v186 French bean 46 46
No Yes Glycine max v109 Soybean 93 93
No Yes Cucumis sativus v122 Cucumber 42 42
No Yes Fragaria vesca Wild strawberry 40 36
No Yes Malus domestica v196 Apple 48 46
No Yes Prunus persica v139 Peach 39 39
No Yes Linum usitatissimum v200 Flax 71 67
No Yes Manihot esculenta v147 Cassava 46 46
No Yes Populus trichocarpa v156 Black cottonwood 56 56
No Yes Vitis vinifera Wine grape 51 48
No Yes Mimulus guttatus v140 Spotted monkey flower 30 29
No Yes Solanum lycopersicum v.2.3 Tomato 50 49
No Yes Solanum tuberosum Potato 69 66
No Yes Actinidia chinensis Hongyang   36 36
No Yes Aquilegia coerulea v195   124 123
No Yes Triticum urartu 22   43 40
No Yes Triticum aestivum 22 Bread wheat 124 124
No Yes Aegilops tauschii 22   56 56
No Yes Brachypodium distachyon Stiff brome 72 71
No Yes Oryza barthii 22 African wild rice 69 62
No Yes Oryza meridionalis 22   64 63
No Yes Oryza glumaepatula 22   59 57
No Yes Oryza glaberrima African rice 34 34
No Yes Oryza punctata 22   68 60
No Yes Oryza nivara 22   68 61
No Yes Oryza brachyantha 22 Malo sina 39 39
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 87 87
No Yes Oryza sativa v193 Rice 86 86
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 41 40
No Yes Panicum virgatum v202 Switchgrass 96 96
No Yes Setaria italica v164 Foxtail millet 62 62
No Yes Zea mays subsp. mays Maize 74 74
No Yes Zea mays v181 Maize 80 80
No Yes Sorghum bicolor Sorghum 54 48
No Yes Musa balbisiana Balbis banana 36 36
No Yes Musa acuminata 22 Wild Malaysian banana 37 37
No Yes Amborella trichopoda 22   29 29
No Yes Physcomitrella patens   19 19
No Yes Coccomyxa subellipsoidea sp. C-169 v2   4 4
No Yes Asterochloris sp. Cgr/DA1pho v1.0   4 4
No Yes Chlorella variabilis sp. NC64A   5 5
No Yes Chlorella vulgaris   4 4
No Yes Volvox carteri f. nagariensis   6 6
No Yes Volvox carteri v199   4 4
No Yes Chlamydomonas reinhardtii 4.0   7 7
No Yes Ostreococcus sp. RCC809   2 2
No Yes Ostreococcus lucimarinus CCE9901   2 2
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   2 2
No Yes Micromonas sp. RCC299   2 2
No Yes Micromonas pusilla CCMP1545 v3.0   2 2
No Yes Thecamonas trahens ATCC 50062   7 7
No Yes Bigelowiella natans CCMP2755 22   9 9
No Yes Cyanophora paradoxa   1 1
No Yes Leishmania mexicana 2.4   1 1
No Yes Leishmania major strain Friedlin   1 1
No Yes Leishmania infantum JPCM5 2.4   1 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma congolense 2.4   2 2
No Yes Trypanosoma brucei gambiense v4.1   4 4
No Yes Trypanosoma brucei TREU927 v4.1   3 3
No Yes Ectocarpus siliculosus   3 3
No Yes Aureococcus anophagefferens   11 11
No Yes Albugo laibachii 22   6 6
No Yes Pythium iwayamai DAOM BR242034 22   22 20
No Yes Pythium arrhenomanes ATCC 12531 22   13 13
No Yes Pythium ultimum v1.7-2   19 19
No Yes Pythium aphanidermatum DAOM BR444 22   17 17
No Yes Pythium irregulare DAOM BR486 22   20 19
No Yes Pythium vexans DAOM BR484 22   18 18
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 16 14
No Yes Phytophthora sojae 1.1   17 15
No Yes Phytophthora infestans T30-4   18 18
No Yes Phytophthora capsici   16 16
No Yes Hyaloperonospora arabidopsidis 22   11 11
No Yes Phaeodactylum tricornutumCCAP 1055/1   6 6
No Yes Fragilariopsis cylindrus   11 11
No Yes Thalassiosira pseudonana CCMP1335   4 4
No Yes Perkinsus marinus ATCC 50983   30 30
No Yes Paramecium tetraurelia   26 26
No Yes Tetrahymena thermophila SB210 1   23 23
No Yes Ichthyophthirius multifiliis strain G5   2 2
No Yes Symbiodinium minutum clade B1 v1.2   9 9
No Yes Naegleria gruberi   9 9
No Yes Guillardia theta CCMP2712 v1.0   4 4
No Yes Emiliania huxleyi CCMP1516   20 20
No Yes Desulfatibacillum alkenivorans AK-01   1 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Legionella longbeachae NSW150   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 4 4
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 4 4
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 9 6
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 16 10
No Yes Cryptococcus neoformans var. grubii H99   4 4
No Yes Cryptococcus neoformans B-3501A   4 4
No Yes Cryptococcus neoformans JEC21   4 4
No Yes Paracoccidioides brasiliensis Pb01   3 3
No Yes Paracoccidioides brasiliensis Pb03   4 4
No Yes Coccidioides posadasii str. Silveira   8 8
No Yes Coccidioides immitis RMSCC 3703   9 9
No Yes Coccidioides immitis RMSCC 2394   9 9
No Yes Coccidioides immitis H538.4   5 5
No Yes Ajellomyces dermatitidis ER-3   5 5
No Yes Histoplasma capsulatum H143   5 5
No Yes Histoplasma capsulatum H88   5 5
No Yes Histoplasma capsulatum G186AR   7 7
No Yes Aspergillus fumigatus A1163   10 10
No Yes Candida albicans WO-1   4 4
No Yes Saccharomyces cerevisiae UC5   3 3
No Yes Saccharomyces cerevisiae PW5   3 3
No Yes Saccharomyces cerevisiae FL100   1 1
No Yes Saccharomyces cerevisiae CLIB324   1 1
No Yes Saccharomyces cerevisiae CBS7960   2 2
No Yes Saccharomyces cerevisiae YJM269   2 2
No Yes Saccharomyces cerevisiae T7   3 3
No Yes Saccharomyces cerevisiae FostersB   3 3
No Yes Saccharomyces cerevisiae FostersO   3 3
No Yes Saccharomyces cerevisiae VL3   3 3
No Yes Saccharomyces cerevisiae Vin13   3 3
No Yes Saccharomyces cerevisiae LalvinQA23   3 3
No Yes Saccharomyces cerevisiae AWRI796   3 3
No Yes Saccharomyces cerevisiae Sigma1278b   3 3
No Yes Saccharomyces cerevisiae W303   3 3
No Yes Saccharomyces cerevisiae JAY291   3 3
No Yes Saccharomyces cerevisiae AWRI1631   2 2
No Yes Saccharomyces cerevisiae YPS163   1 1
No Yes Saccharomyces cerevisiae M22   2 2
No Yes Saccharomyces cerevisiae T73   2 2
No Yes Saccharomyces cerevisiae CLIB215   2 2
No Yes Saccharomyces cerevisiae YJM789   3 3
No Yes Saccharomyces cerevisiae YJM789   3 3
No Yes Saccharomyces cerevisiae RM11-1a   2 2
No Yes Saccharomyces cerevisiae RM11-1a   2 2
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 3 3
No Yes Schizosaccharomyces pombe 972h-   3 3
No Yes Batrachochytrium dendrobatidis JEL423   4 4
No Yes Batrachochytrium dendrobatidis JAM81   3 3
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 41 41
No Yes Hordeum vulgare 22 Domesticated barley 90 90
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 42 42
No Yes Trypanosoma brucei Lister 427 v4.1   3 3
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 12 12
No Yes Homo sapiens (NCBI version) Human 5 5
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 2 2
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Moniliophthora perniciosa FA553 (Genome survey)   4 4
No Yes Picea sitchensis (Incomplete) Sitka spruce 6 6
No Yes Lotus japonicus (Early assembly)   20 20
No Yes Malus x domestica (Duplicate) Apple 48 46
No Yes Ricinus communis (Early assembly) Castor bean 37 37
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   45 42
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 49 48
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 50 49
No Yes Phoenix dactylifera (Early draft) Date palm 23 23
No Yes Homo sapiens 69_37 Human 2 2
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 2 2
No Yes Pongo abelii 69_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 2 2
No Yes Macaca mulatta 69_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 2 2
No Yes Otolemur garnettii 69_3 Small-eared galago 2 2
No Yes Microcebus murinus 69_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 2 2
No Yes Mus musculus 69_38 House mouse 2 2
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 2 2
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 2 2
No Yes Cavia porcellus 69_3 Domestic guinea pig 3 3
No Yes Oryctolagus cuniculus 69_2 Rabbit 2 2
No Yes Ochotona princeps 69 American pika 3 2
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 2 2
No Yes Bos taurus 69_3.1 Cattle 3 3
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 2 2
No Yes Canis familiaris 69_3.1 Dog 2 2
No Yes Felis catus 69 Domestic cat 2 2
No Yes Equus caballus 69_2 Horse 2 2
No Yes Myotis lucifugus 69_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 69_1 Large flying fox 2 2
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 1 1
No Yes Procavia capensis 69_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 3 3
No Yes Echinops telfairi 69 Small Madagascar hedgehog 2 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 2 2
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 2 2
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 3 3
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 3 3
No Yes Ornithorhynchus anatinus 69_5 Platypus 2 2
No Yes Petromyzon marinus 69_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 69_2.0 Green anole 3 3
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 4 4
No Yes Gadus morhua 69_1 Atlantic cod 3 3
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 3 3
No Yes Takifugu rubripes 69_4 Torafugu 3 3
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 4 4
No Yes Oryzias latipes 69_1 Japanese medaka 3 3
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 3 3
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 3 3
No Yes Danio rerio 69_9 Zebrafish 4 4
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 69 Vase tunicate 3 3
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes Caenorhabditis elegans 69_215 Roundworm 15 9
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 3 3
No Yes Arabidopsis thaliana 10 Thale cress 51 51
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes NCBI 2017_08 genome   8029 7969
No Yes Protozoadb 2010_08 (Protozoadb)   11 11
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   954 921
No Yes Uniprot 2018_03 genome   13882 13539
No Yes Global Ocean Sampling Expedition (GOS)   17 17
No Yes PDB chains (SCOP 1.75) (PDB)   13 13
No Yes Protein Data Bank (all PDB sequenc)   31 31
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   64 64
No Yes TargetDB (Targets)   8 8

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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