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  Home > Genomes > PDB chains (SCOP 1.75) > Acyl-CoA thioesterase domains


Acyl-CoA thioesterase family domain assignments
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PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 3 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1tbuA   1.36e-33   0.0000119   11-116   1tbu A:13-116  
 
Weak hits:
1c8uA   3.62e-82   0.00017   115-282   1c8u A:116-286  
  2.09e-61   0.0069   7-114   1c8u A:2-115  

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Select to display   Genome       Domains   Proteins
No Yes ALL   86682 86682
No Yes Homo sapiens 76_38 Human 2 2
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 1 1
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1 1
No Yes Microcebus murinus 76_1 Gray mouse lemur 1 1
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Saccoglossus kowalevskii v3.0   1 1
No Yes Lepisosteus oculatus 76 Spotted gar 1 1
No Yes Astyanax mexicanus 76 Mexican tetra 1 1
No Yes Danio rerio 76_9 Zebrafish 1 1
No Yes Caenorhabditis remanei   2 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Trichoplax adhaerens   1 1
No Yes Mucor circinelloides   2 2
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Candida glabrata CBS138   1 1
No Yes Lachancea kluyveri   1 1
No Yes Zygosaccharomyces rouxii   1 1
No Yes Saccharomyces mikatae MIT   1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 1 1
No Yes Saccharomyces bayanus MIT   1 1
No Yes Kluyveromyces lactis   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Selaginella moellendorffii   2 2
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Linum usitatissimum v200 Flax 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Emiliania huxleyi CCMP1516   1 1
No Yes Ilumatobacter coccineus   2 1
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Nakamurella multipartita DSM 44233   2 1
No Yes Catenulispora acidiphila DSM 44928   2 1
No Yes Stackebrandtia nassauensis DSM 44728   2 1
No Yes Frankia symbiont of Datisca glomerata   2 1
No Yes Frankia sp. EAN1pec   1 1
No Yes Frankia alni ACN14a   1 1
No Yes Thermobifida fusca YX   2 1
No Yes Thermomonospora curvata DSM 43183   2 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Kitasatospora setae KM-6054   3 2
No Yes Streptomyces coelicolor A3(2)   4 2
No Yes Streptomyces sp. PAMC26508   4 2
No Yes Streptomyces flavogriseus ATCC 33331   4 2
No Yes Streptomyces sp. SirexAA-E   3 2
No Yes Streptomyces griseus subsp. griseus NBRC 13350   4 2
No Yes Streptomyces bingchenggensis BCW-1   4 2
No Yes Streptomyces violaceusniger Tu 4113   4 2
No Yes Streptomyces avermitilis MA-4680   4 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   4 2
No Yes Streptomyces scabiei 87.22   4 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   3 2
No Yes Actinosynnema mirum DSM 43827   2 1
No Yes Saccharomonospora viridis DSM 43017   2 1
No Yes Saccharopolyspora erythraea NRRL 2338   2 1
No Yes Amycolatopsis mediterranei U32   2 1
No Yes Kribbella flavida DSM 17836   2 1
No Yes Nocardioides sp. JS614   1 1
No Yes Propionibacterium propionicum F0230a   1 1
No Yes Microlunatus phosphovorus NM-1   2 1
No Yes Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1   1 1
No Yes Salinispora arenicola CNS-205   2 1
No Yes Salinispora tropica CNB-440   2 1
No Yes Verrucosispora maris AB-18-032   2 1
No Yes Micromonospora sp. L5   2 1
No Yes Micromonospora aurantiaca ATCC 27029   2 1
No Yes Actinoplanes sp. N902-109   1 1
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Actinoplanes missouriensis 431   1 1
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Rhodococcus equi 103S   1 1
No Yes Rhodococcus opacus B4   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia cyriacigeorgica GUH-2   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Sanguibacter keddieii DSM 10542   1 1
No Yes Leifsonia xyli subsp. xyli str. CTCB07   1 1
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter chlorophenolicus A6   1 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter arilaitensis Re117   1 1
No Yes Kocuria rhizophila DC2201   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Renibacterium salmoninarum ATCC 33209   1 1
No Yes Micrococcus luteus NCTC 2665   1 1
No Yes Gemmatimonas aurantiaca T-27   2 1
No Yes Haliscomenobacter hydrossis DSM 1100   2 1
No Yes Rhodothermus marinus DSM 4252   2 1
No Yes Leadbetterella byssophila DSM 17132   2 1
No Yes Polaribacter sp. MED152   2 1
No Yes Ornithobacterium rhinotracheale DSM 15997   2 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Desulfobacterium autotrophicum HRM2   2 1
No Yes Geobacter metallireducens GS-15   2 1
No Yes Stigmatella aurantiaca DW4/3-1   2 1
No Yes Corallococcus coralloides DSM 2259   2 1
No Yes Myxococcus xanthus DK 1622   2 1
No Yes Myxococcus fulvus HW-1   2 1
No Yes Variovorax paradoxus S110   1 1
No Yes Rhodoferax ferrireducens T118   2 1
No Yes Herminiimonas arsenicoxydans   1 1
No Yes Janthinobacterium sp. Marseille   1 1
No Yes Advenella kashmirensis WT001   1 1
No Yes Parvularcula bermudensis HTCC2503   1 1
No Yes Caulobacter sp. K31   2 1
No Yes Caulobacter crescentus NA1000   2 1
No Yes Caulobacter segnis ATCC 21756   2 1
No Yes Phenylobacterium zucineum HLK1   3 2
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Novosphingobium sp. PP1Y   2 2
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Sphingobium sp. SYK-6   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Maricaulis maris MCS10   2 1
No Yes Hyphomonas neptunium ATCC 15444   2 1
No Yes Phaeobacter gallaeciensis 2.10   2 1
No Yes Pseudovibrio sp. FO-BEG1   2 1
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Polymorphum gilvum SL003B-26A1   2 1
No Yes Starkeya novella DSM 506   1 1
No Yes Xanthobacter autotrophicus Py2   2 1
No Yes Azorhizobium caulinodans ORS 571   2 1
No Yes Methylobacterium chloromethanicum CM4   2 1
No Yes Methylobacterium extorquens AM1   2 1
No Yes Methylobacterium sp. 4-46   2 1
No Yes Methylobacterium populi BJ001   2 1
No Yes Methylobacterium nodulans ORS 2060   2 1
No Yes Methylobacterium radiotolerans JCM 2831   2 1
No Yes Parvibaculum lavamentivorans DS-1   2 1
No Yes Ochrobactrum anthropi ATCC 49188   2 1
No Yes Brucella microti CCM 4915   2 1
No Yes Brucella pinnipedialis B2/94   2 1
No Yes Brucella canis ATCC 23365   2 1
No Yes Brucella melitensis ATCC 23457   2 1
No Yes Brucella ovis ATCC 25840   2 1
No Yes Brucella abortus S19   2 1
No Yes Sinorhizobium fredii NGR234   2 1
No Yes Sinorhizobium medicae WSM419   2 1
No Yes Sinorhizobium meliloti AK83   2 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   2 1
No Yes Rhizobium etli CIAT 652   2 1
No Yes Rhizobium leguminosarum bv. viciae 3841   2 1
No Yes Agrobacterium tumefaciens str. C58   2 1
No Yes Agrobacterium radiobacter K84   2 1
No Yes Agrobacterium sp. H13-3   2 1
No Yes Agrobacterium vitis S4   2 1
No Yes Mesorhizobium sp. BNC1   2 1
No Yes Mesorhizobium opportunistum WSM2075   2 1
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   2 1
No Yes Mesorhizobium loti MAFF303099   2 1
No Yes Methylocella silvestris BL2   2 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   2 1
No Yes Hyphomicrobium sp. MC1   2 1
No Yes Hyphomicrobium denitrificans ATCC 51888   1 1
No Yes Oligotropha carboxidovorans OM4   2 1
No Yes Rhodopseudomonas palustris BisA53   2 1
No Yes Nitrobacter winogradskyi Nb-255   2 1
No Yes Nitrobacter hamburgensis X14   2 1
No Yes Bradyrhizobium japonicum USDA 110   2 1
No Yes Bradyrhizobium sp. ORS 278   2 1
No Yes Methylocystis sp. SC2   1 1
No Yes Aggregatibacter aphrophilus NJ8700   2 1
No Yes Aggregatibacter actinomycetemcomitans D7S-1   2 1
No Yes Gallibacterium anatis UMN179   2 1
No Yes Pasteurella multocida subsp. multocida str. 3480   2 1
No Yes Haemophilus parainfluenzae T3T1   2 1
No Yes Haemophilus influenzae PittEE   2 1
No Yes Actinobacillus succinogenes 130Z   2 1
No Yes Oceanimonas sp. GK1   2 1
No Yes Aeromonas veronii B565   2 1
No Yes Aeromonas salmonicida subsp. salmonicida A449   2 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   2 1
No Yes Aliivibrio salmonicida LFI1238   2 1
No Yes Vibrio fischeri MJ11   2 1
No Yes Vibrio sp. Ex25   2 1
No Yes Vibrio harveyi ATCC BAA-1116   2 1
No Yes Vibrio parahaemolyticus RIMD 2210633   2 1
No Yes Vibrio splendidus LGP32   2 1
No Yes Vibrio anguillarum 775   2 1
No Yes Vibrio furnissii NCTC 11218   2 1
No Yes Vibrio vulnificus MO6-24/O   2 1
No Yes Vibrio cholerae O395   2 1
No Yes Photobacterium profundum SS9   2 1
No Yes Psychromonas ingrahamii 37   2 1
No Yes Psychromonas sp. CNPT3   2 1
No Yes Idiomarina loihiensis L2TR   2 1
No Yes Ferrimonas balearica DSM 9799   2 1
No Yes Shewanella piezotolerans WP3   2 1
No Yes Shewanella loihica PV-4   2 1
No Yes Shewanella halifaxensis HAW-EB4   2 1
No Yes Shewanella sediminis HAW-EB3   2 1
No Yes Shewanella denitrificans OS217   2 1
No Yes Shewanella pealeana ATCC 700345   2 1
No Yes Shewanella oneidensis MR-1   2 1
No Yes Shewanella baltica OS185   2 1
No Yes Shewanella woodyi ATCC 51908   2 1
No Yes Shewanella sp. MR-4   2 1
No Yes Shewanella amazonensis SB2B   2 1
No Yes Shewanella violacea DSS12   2 1
No Yes Shewanella frigidimarina NCIMB 400   2 1
No Yes Shewanella putrefaciens CN-32   2 1
No Yes Colwellia psychrerythraea 34H   2 1
No Yes Pseudoalteromonas sp. SM9913   2 1
No Yes Pseudoalteromonas atlantica T6c   2 1
No Yes Pseudoalteromonas haloplanktis TAC125   2 1
No Yes Glaciecola sp. 4H-3-7+YE-5   2 1
No Yes Glaciecola nitratireducens FR1064   2 1
No Yes Marinobacter adhaerens HP15   1 1
No Yes Marinobacter sp. BSs20148   2 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Alteromonas sp. SN2   2 1
No Yes Hahella chejuensis KCTC 2396   2 1
No Yes Alcanivorax borkumensis SK2   2 1
No Yes Marinomonas posidonica IVIA-Po-181   2 1
No Yes Marinomonas sp. MWYL1   2 1
No Yes Marinomonas mediterranea MMB-1   2 1
No Yes Chromohalobacter salexigens DSM 3043   2 1
No Yes Halomonas elongata DSM 2581   2 1
No Yes Rhodanobacter denitrificans   2 1
No Yes Frateuria aurantia DSM 6220   2 1
No Yes Pseudoxanthomonas spadix BD-a59   2 1
No Yes Pseudoxanthomonas suwonensis 11-1   2 1
No Yes Stenotrophomonas maltophilia K279a   2 1
No Yes Xylella fastidiosa M23   2 1
No Yes Xanthomonas axonopodis pv. citri str. 306   2 1
No Yes Xanthomonas albilineans GPE PC73   2 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   2 1
No Yes Xanthomonas campestris pv. campestris str. B100   2 1
No Yes gamma proteobacterium HdN1   4 2
No Yes Photorhabdus asymbiotica   2 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   2 1
No Yes Xenorhabdus nematophila ATCC 19061   2 1
No Yes Providencia stuartii MRSN 2154   2 1
No Yes Proteus mirabilis HI4320   2 1
No Yes Edwardsiella ictaluri 93-146   2 1
No Yes Edwardsiella tarda EIB202   2 1
No Yes Rahnella sp. Y9602   2 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   2 1
No Yes Yersinia pseudotuberculosis IP 31758   2 1
No Yes Yersinia pestis Pestoides F   2 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   2 1
No Yes Serratia sp. AS12   2 1
No Yes Serratia sp. ATCC 39006   2 1
No Yes Serratia plymuthica AS9   2 1
No Yes Serratia proteamaculans 568   2 1
No Yes Dickeya dadantii Ech703   2 1
No Yes Dickeya zeae Ech1591   2 1
No Yes Pectobacterium wasabiae WPP163   2 1
No Yes Pectobacterium sp. SCC3193   2 1
No Yes Pectobacterium atrosepticum SCRI1043   2 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   2 1
No Yes Pantoea sp. At-9b   2 1
No Yes Pantoea vagans C9-1   2 1
No Yes Pantoea ananatis LMG 20103   2 1
No Yes Erwinia tasmaniensis Et1/99   2 1
No Yes Erwinia sp. Ejp617   2 1
No Yes Erwinia billingiae Eb661   2 1
No Yes Erwinia pyrifoliae Ep1/96   2 1
No Yes Erwinia amylovora ATCC 49946   2 1
No Yes Escherichia blattae DSM 4481   2 1
No Yes Cronobacter turicensis z3032   2 1
No Yes Cronobacter sakazakii ES15   2 1
No Yes Enterobacteriaceae bacterium strain FGI 57   2 1
No Yes Shigella sonnei Ss046   2 1
No Yes Shigella flexneri 5 str. 8401   2 1
No Yes Shigella dysenteriae Sd197   2 1
No Yes Shigella boydii CDC 3083-94   2 1
No Yes Salmonella bongori NCTC 12419   2 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   2 1
No Yes Klebsiella oxytoca E718   2 1
No Yes Klebsiella variicola At-22   2 1
No Yes Klebsiella pneumoniae NTUH-K2044   2 1
No Yes Enterobacter aerogenes KCTC 2190   2 1
No Yes Escherichia fergusonii ATCC 35469   2 1
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   2 1
No Yes Enterobacter sp. R4-368   2 1
No Yes Enterobacter sp. 638   2 1
No Yes Enterobacter asburiae LF7a   2 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   2 1
No Yes Citrobacter rodentium ICC168   2 1
No Yes Citrobacter koseri ATCC BAA-895   2 1
No Yes Azotobacter vinelandii DJ   2 1
No Yes Pseudomonas sp. TKP   2 1
No Yes Pseudomonas sp. UW4   2 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   2 1
No Yes Pseudomonas entomophila L48   2 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   2 1
No Yes Pseudomonas stutzeri A1501   2 1
No Yes Pseudomonas fulva 12-X   2 1
No Yes Pseudomonas putida F1   2 1
No Yes Pseudomonas protegens Pf-5   2 1
No Yes Pseudomonas fluorescens SBW25   2 1
No Yes Pseudomonas mendocina ymp   2 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   2 1
No Yes Pseudomonas sp. VLB120   2 1
No Yes Psychrobacter sp. G   1 1
No Yes Psychrobacter sp. PRwf-1   1 1
No Yes Psychrobacter arcticus 273-4   1 1
No Yes Psychrobacter cryohalolentis K5   1 1
No Yes Moraxella catarrhalis RH4   1 1
No Yes Acinetobacter oleivorans DR1   1 1
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Acinetobacter baumannii ATCC 17978   1 1
No Yes Acinetobacter sp. ADP1   2 1
No Yes Saccharomyces cerevisiae UC5   1 1
No Yes Saccharomyces cerevisiae PW5   1 1
No Yes Saccharomyces cerevisiae FL100   1 1
No Yes Saccharomyces cerevisiae CBS7960   1 1
No Yes Saccharomyces cerevisiae YJM269   1 1
No Yes Saccharomyces cerevisiae T7   1 1
No Yes Saccharomyces cerevisiae FostersB   1 1
No Yes Saccharomyces cerevisiae VL3   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Saccharomyces cerevisiae Sigma1278b   1 1
No Yes Saccharomyces cerevisiae W303   1 1
No Yes Saccharomyces cerevisiae JAY291   1 1
No Yes Saccharomyces cerevisiae AWRI1631   1 1
No Yes Saccharomyces cerevisiae T73   1 1
No Yes Saccharomyces cerevisiae CLIB215   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 1 1
No Yes Nocardiopsis alba ATCC BAA-2165   2 1
No Yes Streptomyces albus J1074   4 2
No Yes Streptomyces rapamycinicus NRRL 5491   5 3
No Yes Streptomyces davawensis JCM 4913   4 2
No Yes Streptomyces fulvissimus DSM 40593   4 2
No Yes Streptomyces venezuelae ATCC 10712   3 2
No Yes Streptomyces collinus Tu 365   4 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   4 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   3 2
No Yes Saccharothrix espanaensis DSM 44229   2 1
No Yes Amycolatopsis mediterranei RB   2 1
No Yes Amycolatopsis mediterranei S699   2 1
No Yes Amycolatopsis mediterranei S699   2 1
No Yes Amycolatopsis orientalis HCCB10007   2 1
No Yes Propionibacterium avidum 44067   1 1
No Yes Actinoplanes friuliensis DSM 7358   1 1
No Yes Rhodococcus pyridinivorans SB3094   1 1
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Leifsonia xyli subsp. cynodontis DSM 46306   1 1
No Yes Clavibacter michiganensis subsp. sepedonicus   1 1
No Yes Clavibacter michiganensis subsp. nebraskensis NCPPB 2581   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   2 1
No Yes Emticicia oligotrophica DSM 17448   2 1
No Yes Myxococcus stipitatus DSM 14675   2 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Caulobacter crescentus CB15   2 1
No Yes Phaeobacter gallaeciensis DSM 17395   2 1
No Yes Phaeobacter gallaeciensis DSM 26640   2 1
No Yes Leisingera methylohalidivorans DSM 14336   2 1
No Yes Methylobacterium extorquens DM4   2 1
No Yes Methylobacterium extorquens PA1   2 1
No Yes Brucella ceti TE10759-12   2 1
No Yes Brucella ceti TE28753-12   2 1
No Yes Brucella canis HSK A52141   2 1
No Yes Brucella suis VBI22   2 1
No Yes Brucella suis 1330   2 1
No Yes Brucella suis 1330   2 1
No Yes Brucella melitensis NI   2 1
No Yes Brucella melitensis M5-90   2 1
No Yes Brucella melitensis M28   2 1
No Yes Brucella melitensis bv. 1 str. 16M   2 1
No Yes Brucella abortus A13334   2 1
No Yes Brucella melitensis biovar Abortus 2308   2 1
No Yes Brucella abortus bv. 1 str. 9-941   2 1
No Yes Sinorhizobium fredii USDA 257   2 1
No Yes Sinorhizobium fredii HH103   2 1
No Yes Sinorhizobium meliloti 2011   2 1
No Yes Sinorhizobium meliloti GR4   2 1
No Yes Sinorhizobium meliloti Rm41   2 1
No Yes Sinorhizobium meliloti SM11   2 1
No Yes Sinorhizobium meliloti BL225C   2 1
No Yes Sinorhizobium meliloti 1021   2 1
No Yes Rhizobium etli CFN 42   2 1
No Yes Rhizobium etli bv. mimosae str. Mim1   2 1
No Yes Rhizobium tropici CIAT 899   2 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   2 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   2 1
No Yes Mesorhizobium australicum WSM2073   2 1
No Yes Hyphomicrobium nitrativorans NL23   2 1
No Yes Hyphomicrobium denitrificans 1NES1   2 1
No Yes Oligotropha carboxidovorans OM5   2 1
No Yes Oligotropha carboxidovorans OM5   2 1
No Yes Rhodopseudomonas palustris DX-1   2 1
No Yes Rhodopseudomonas palustris TIE-1   2 1
No Yes Rhodopseudomonas palustris HaA2   2 1
No Yes Rhodopseudomonas palustris BisB5   2 1
No Yes Rhodopseudomonas palustris BisB18   2 1
No Yes Rhodopseudomonas palustris CGA009   2 1
No Yes Bradyrhizobium sp. S23321   2 1
No Yes Bradyrhizobium sp. BTAi1   2 1
No Yes Bradyrhizobium oligotrophicum S58   2 1
No Yes Bradyrhizobium japonicum USDA 6   2 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Mannheimia succiniciproducens MBEL55E   2 1
No Yes Bibersteinia trehalosi USDA-ARS-USMARC-192   2 1
No Yes Aggregatibacter actinomycetemcomitans ANH9381   2 1
No Yes Pasteurella multocida 36950   2 1
No Yes Pasteurella multocida subsp. multocida str. HN06   2 1
No Yes Pasteurella multocida subsp. multocida str. Pm70   2 1
No Yes Haemophilus influenzae KR494   2 1
No Yes Haemophilus influenzae F3031   2 1
No Yes Haemophilus influenzae 10810   2 1
No Yes Haemophilus influenzae PittGG   2 1
No Yes Haemophilus influenzae 86-028NP   2 1
No Yes Haemophilus influenzae R2866   2 1
No Yes Haemophilus influenzae R2846   2 1
No Yes Haemophilus influenzae Rd KW20   2 1
No Yes Aeromonas hydrophila ML09-119   2 1
No Yes Vibrio fischeri ES114   2 1
No Yes Vibrio sp. EJY3   2 1
No Yes Vibrio parahaemolyticus BB22OP   2 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   2 1
No Yes Vibrio anguillarum Listonella anguillarum M3   2 1
No Yes Vibrio nigripulchritudo VibrioScope   2 1
No Yes Vibrio vulnificus CMCP6   2 1
No Yes Vibrio vulnificus YJ016   2 1
No Yes Vibrio cholerae LMA3984-4   2 1
No Yes Vibrio cholerae M66-2   2 1
No Yes Vibrio cholerae O395   2 1
No Yes Vibrio cholerae IEC224   2 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   2 1
No Yes Vibrio cholerae MJ-1236   2 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   2 1
No Yes Idiomarina loihiensis GSL 199   2 1
No Yes Shewanella sp. W3-18-1   2 1
No Yes Shewanella sp. ANA-3   2 1
No Yes Shewanella baltica BA175   2 1
No Yes Shewanella baltica OS678   2 1
No Yes Shewanella baltica OS117   2 1
No Yes Shewanella baltica OS223   2 1
No Yes Shewanella baltica OS195   2 1
No Yes Shewanella baltica OS155   2 1
No Yes Shewanella sp. MR-7   2 1
No Yes Shewanella putrefaciens 200   2 1
No Yes Glaciecola psychrophila 170   2 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   2 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   2 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   2 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   2 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   2 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   2 1
No Yes Alteromonas macleodii str. 'English Channel 615'   2 1
No Yes Alteromonas macleodii AltDE1   2 1
No Yes Alteromonas macleodii str. 'English Channel 673'   2 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   2 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   2 1
No Yes Alteromonas macleodii ATCC 27126   2 1
No Yes Alcanivorax dieselolei B5   4 2
No Yes Thalassolituus oleivorans MIL-1   1 1
No Yes Stenotrophomonas maltophilia D457   2 1
No Yes Stenotrophomonas maltophilia JV3   2 1
No Yes Stenotrophomonas maltophilia R551-3   2 1
No Yes Xylella fastidiosa subsp. fastidiosa GB514   2 1
No Yes Xylella fastidiosa M12   2 1
No Yes Xylella fastidiosa Temecula1   2 1
No Yes Xylella fastidiosa 9a5c   2 1
No Yes Xanthomonas citri subsp. citri Aw12879   2 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   2 1
No Yes Xanthomonas axonopodis Xac29-1   2 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   2 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   2 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   2 1
No Yes Xanthomonas campestris pv. raphani 756C   2 1
No Yes Xanthomonas campestris pv. campestris str. 8004   2 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   2 1
No Yes Proteus mirabilis BB2000   2 1
No Yes Morganella morganii subsp. morganii KT   2 1
No Yes Edwardsiella tarda C07-087   2 1
No Yes Edwardsiella tarda FL6-60   2 1
No Yes Rahnella aquatilis HX2   2 1
No Yes Yersinia pseudotuberculosis PB1/+   2 1
No Yes Yersinia pseudotuberculosis YPIII   2 1
No Yes Yersinia pseudotuberculosis IP 32953   2 1
No Yes Yersinia pestis biovar Microtus str. 91001   2 1
No Yes Yersinia pestis A1122   2 1
No Yes Yersinia pestis Z176003   2 1
No Yes Yersinia pestis D182038   2 1
No Yes Yersinia pestis D106004   2 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   2 1
No Yes Yersinia pestis Nepal516   2 1
No Yes Yersinia pestis Antiqua   2 1
No Yes Yersinia pestis Angola   2 1
No Yes Yersinia pestis CO92   2 1
No Yes Yersinia pestis KIM10+   2 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   2 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   2 1
No Yes Serratia sp. AS13   2 1
No Yes Serratia plymuthica S13   2 1
No Yes Serratia plymuthica 4Rx13   2 1
No Yes Serratia marcescens FGI94   2 1
No Yes Serratia marcescens WW4   2 1
No Yes Serratia liquefaciens ATCC 27592   2 1
No Yes Dickeya dadantii Ech586   2 1
No Yes Dickeya dadantii 3937   2 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   2 1
No Yes Pantoea ananatis LMG 5342   2 1
No Yes Pantoea ananatis PA13   2 1
No Yes Pantoea ananatis AJ13355   2 1
No Yes Erwinia pyrifoliae DSM 12163   2 1
No Yes Erwinia amylovora CFBP1430   2 1
No Yes Cronobacter sakazakii CMCC 45402   2 1
No Yes Cronobacter sakazakii SP291   2 1
No Yes Cronobacter sakazakii ATCC BAA-894   2 1
No Yes Raoultella ornithinolytica B6   2 1
No Yes Shigella sonnei 53G   2 1
No Yes Shigella flexneri 2002017   1 1
No Yes Shigella flexneri 2a str. 2457T   2 1
No Yes Shigella flexneri 2a str. 301   2 1
No Yes Shigella dysenteriae 1617   2 1
No Yes Shigella boydii Sb227   2 1
No Yes Salmonella bongori N268-08   2 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   2 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   2 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   2 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   2 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   2 1
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   2 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   2 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   2 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   2 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   2 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   2 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   2 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   2 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   2 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   2 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   2 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   2 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   2 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   2 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   2 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   2 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   2 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   2 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   2 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   2 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   2 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   2 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   2 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   2 1
No Yes Klebsiella oxytoca KCTC 1686   2 1
No Yes Klebsiella pneumoniae JM45   2 1
No Yes Klebsiella pneumoniae CG43   2 1
No Yes Klebsiella pneumoniae KCTC 2242   2 1
No Yes Klebsiella pneumoniae 342   2 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   2 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   2 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   2 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   2 1
No Yes Enterobacter aerogenes EA1509E   2 1
No Yes Escherichia coli E24377A   2 1
No Yes Escherichia coli E. coli PMV-1   2 1
No Yes Escherichia coli JJ1886   2 1
No Yes Escherichia coli LY180   2 1
No Yes Escherichia coli APEC O78   2 1
No Yes Escherichia coli O7:K1 str. CE10   2 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   2 1
No Yes Escherichia coli O104:H4 str. 2009EL-2071   2 1
No Yes Escherichia coli O104:H4 str. 2011C-3493   2 1
No Yes Escherichia coli NA114   2 1
No Yes Escherichia coli P12b   2 1
No Yes Escherichia coli str. 'clone D i2'   2 1
No Yes Escherichia coli str. 'clone D i14'   2 1
No Yes Escherichia coli UM146   2 1
No Yes Escherichia coli 042   2 1
No Yes Escherichia coli Xuzhou21   2 1
No Yes Escherichia coli IHE3034   2 1
No Yes Escherichia coli UMNK88   2 1
No Yes Escherichia coli O83:H1 str. NRG 857C   2 1
No Yes Escherichia coli ABU 83972   2 1
No Yes Escherichia coli KO11FL   2 1
No Yes Escherichia coli KO11FL   2 1
No Yes Escherichia coli LF82   2 1
No Yes Escherichia coli ED1a   2 1
No Yes Escherichia coli IAI39   2 1
No Yes Escherichia coli UMN026   2 1
No Yes Escherichia coli 55989   2 1
No Yes Escherichia coli S88   2 1
No Yes Escherichia coli IAI1   2 1
No Yes Escherichia coli W   2 1
No Yes Escherichia coli W   2 1
No Yes Escherichia coli DH1   2 1
No Yes Escherichia coli DH1   2 1
No Yes Escherichia coli ATCC 8739   2 1
No Yes Escherichia coli BL21(DE3)   2 1
No Yes Escherichia coli BL21(DE3)   2 1
No Yes Escherichia coli SMS-3-5   2 1
No Yes Escherichia coli SE15   2 1
No Yes Escherichia coli SE11   2 1
No Yes Escherichia coli APEC O1   2 1
No Yes Escherichia coli O103:H2 str. 12009   2 1
No Yes Escherichia coli UTI89   2 1
No Yes Escherichia coli 536   2 1
No Yes Escherichia coli HS   2 1
No Yes Escherichia coli ETEC H10407   2 1
No Yes Escherichia coli O55:H7 str. RM12579   2 1
No Yes Escherichia coli O55:H7 str. CB9615   2 1
No Yes Escherichia coli O26:H11 str. 11368   2 1
No Yes Escherichia coli CFT073   2 1
No Yes Escherichia coli O111:H- str. 11128   2 1
No Yes Escherichia coli O127:H6 str. E2348/69   2 1
No Yes Escherichia coli O157:H7 str. TW14359   2 1
No Yes Escherichia coli O157:H7 str. EC4115   2 1
No Yes Escherichia coli O157:H7 str. Sakai   2 1
No Yes Escherichia coli O157:H7 str. EDL933   2 1
No Yes Escherichia coli str. K-12 substr. MDS42   2 1
No Yes Escherichia coli BW2952   2 1
No Yes Escherichia coli str. K-12 substr. MG1655   2 1
No Yes Escherichia coli str. K-12 substr. W3110   2 1
No Yes Escherichia coli str. K-12 substr. DH10B   2 1
No Yes Escherichia coli B str. REL606   2 1
No Yes Enterobacter cloacae SCF1   2 1
No Yes Enterobacter cloacae EcWSU1   2 1
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   2 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   2 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   2 1
No Yes Azotobacter vinelandii CA6   2 1
No Yes Azotobacter vinelandii CA   2 1
No Yes Pseudomonas denitrificans ATCC 13867   2 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   2 1
No Yes Pseudomonas syringae pv. syringae B728a   2 1
No Yes Pseudomonas stutzeri CCUG 29243   2 1
No Yes Pseudomonas stutzeri DSM 10701   2 1
No Yes Pseudomonas stutzeri DSM 4166   2 1
No Yes Pseudomonas stutzeri RCH2   2 1
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   2 1
No Yes Pseudomonas monteilii SB3101   2 1
No Yes Pseudomonas monteilii SB3078   2 1
No Yes Pseudomonas putida H8234   2 1
No Yes Pseudomonas putida HB3267   2 1
No Yes Pseudomonas putida NBRC 14164   2 1
No Yes Pseudomonas putida DOT-T1E   2 1
No Yes Pseudomonas putida S16   2 1
No Yes Pseudomonas putida BIRD-1   2 1
No Yes Pseudomonas putida W619   2 1
No Yes Pseudomonas putida ND6   2 1
No Yes Pseudomonas putida KT2440   2 1
No Yes Pseudomonas putida GB-1   2 1
No Yes Pseudomonas protegens CHA0   2 1
No Yes Pseudomonas poae RE*1-1-14   2 1
No Yes Pseudomonas fluorescens F113   2 1
No Yes Pseudomonas fluorescens A506   2 1
No Yes Pseudomonas fluorescens R124   2 1
No Yes Pseudomonas fluorescens Pf0-1   2 1
No Yes Pseudomonas resinovorans NBRC 106553   2 1
No Yes Pseudomonas mendocina NK-01   2 1
No Yes Pseudomonas aeruginosa SCV20265   2 1
No Yes Pseudomonas aeruginosa MTB-1   2 1
No Yes Pseudomonas aeruginosa LES431   2 1
No Yes Pseudomonas aeruginosa RP73   2 1
No Yes Pseudomonas aeruginosa B136-33   2 1
No Yes Pseudomonas aeruginosa PA1R   2 1
No Yes Pseudomonas aeruginosa PA1   2 1
No Yes Pseudomonas aeruginosa DK2   2 1
No Yes Pseudomonas aeruginosa NCGM2.S1   2 1
No Yes Pseudomonas aeruginosa M18   2 1
No Yes Pseudomonas aeruginosa LESB58   2 1
No Yes Pseudomonas aeruginosa PA7   2 1
No Yes Pseudomonas aeruginosa PAO1   2 1
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter calcoaceticus ruh2202   1 1
No Yes Acinetobacter baumannii ZW85-1   1 1
No Yes Acinetobacter baumannii TYTH-1   1 1
No Yes Acinetobacter baumannii BJAB0868   1 1
No Yes Acinetobacter baumannii BJAB0715   1 1
No Yes Acinetobacter baumannii BJAB07104   1 1
No Yes Acinetobacter baumannii TCDC-AB0715   1 1
No Yes Acinetobacter baumannii D1279779   1 1
No Yes Acinetobacter baumannii MDR-TJ   1 1
No Yes Acinetobacter baumannii 1656-2   1 1
No Yes Acinetobacter baumannii ATCC 19606   1 1
No Yes Acinetobacter baumannii AB307-0294   1 1
No Yes Acinetobacter baumannii AYE   1 1
No Yes Acinetobacter baumannii SDF   1 1
No Yes Acinetobacter baumannii MDR-ZJ06   1 1
No Yes Acinetobacter baumannii AB0057   1 1
No Yes Acinetobacter baumannii ACICU   1 1
No Yes Acinetobacter radioresistens SH164   1 1
No Yes Acinetobacter junii SH205   2 1
No Yes Acinetobacter johnsonii SH046   2 1
No Yes Acinetobacter lwoffii SH145   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 2 2
No Yes Homo sapiens (NCBI version) Human 1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   2 1
No Yes Homo sapiens 69_37 Human 1 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 1 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 1 1
No Yes Microcebus murinus 69_1 Gray mouse lemur 1 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 1 1
No Yes Danio rerio 69_9 Zebrafish 1 1
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 1 1
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes 1_Upper_euphotic (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   2 1
No Yes 4_050719Q (meta-genome)   2 1
No Yes 5_050719P (meta-genome)   2 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   16 13
No Yes Combined (meta-genome)   21 18
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   26 17
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   7 6
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   5 3
No Yes Dump bottom (Dump bottom) (meta-genome)   14 14
No Yes Dump top (Dump top) (meta-genome)   11 10
No Yes Endophytic microbiome from Rice (meta-genome)   7 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   4 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   17 14
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   25 19
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   29 22
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   10 10
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   6 6
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   7 5
No Yes NCBI 2017_08 genome   71343 38212
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   3 3
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   2 1
No Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome)   2 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   4 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   7 6
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   8 6
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   547 301
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   6 6
No Yes Uniprot 2018_03 genome   11836 6900
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   2 1
No Yes Global Ocean Sampling Expedition (GOS)   488 399
No Yes NCBI plasmid sequences (Plasmids)   3 2
No Yes PDB chains (SCOP 1.75) (PDB)   3 2
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   88 88
No Yes TargetDB (Targets)   1 1
No Yes The Salmonella enterica Pan-genome (meta-genome)   62 31

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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