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  Home > Genomes > PDB chains (SCOP 1.75) > Monooxygenase (hydroxylase) regulatory protein domains


Monooxygenase (hydroxylase) regulatory protein superfamily domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
1ckvA   3.15e-49   1-140   Monooxygenase (hydroxylase) regulatory protein  
1hqiA   4.76e-45   7-88   Monooxygenase (hydroxylase) regulatory protein  
2bf2A   1.02e-37   14-95   Monooxygenase (hydroxylase) regulatory protein  
2bf5A   8.79e-38   10-91   Monooxygenase (hydroxylase) regulatory protein  
2mobA   1.68e-45   1-137   Monooxygenase (hydroxylase) regulatory protein  

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Select to display   Genome       Domains   Proteins
No Yes ALL   3818 3818
No Yes Capitella sp. I   1 1
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Pseudonocardia dioxanivorans CB1190   7 7
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Nocardioides sp. JS614   1 1
No Yes Gordonia sp. KTR9   1 1
No Yes Gordonia polyisoprenivorans VH2   2 2
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium rhodesiae NBB3   2 2
No Yes Mycobacterium chubuense NBB4   5 5
No Yes Mycobacterium marinum M   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Sulfobacillus acidophilus DSM 10332   3 3
No Yes Kyrpidia tusciae DSM 2912   4 4
No Yes Bacillus sp. 1NLA3E   1 1
No Yes Arcobacter sp. L   1 1
No Yes Dechloromonas aromatica RCB   2 2
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. BH72   3 3
No Yes Methylibium petroleiphilum PM1   5 5
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Ralstonia eutropha JMP134   3 3
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus metallidurans CH34   3 3
No Yes Cupriavidus necator N-1   2 2
No Yes Ralstonia eutropha H16   1 1
No Yes Ralstonia pickettii 12D   2 2
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Verminephrobacter eiseniae EF01-2   2 2
No Yes Alicycliphilus denitrificans K601   1 1
No Yes Acidovorax sp. JS42   1 1
No Yes Comamonas testosteroni CNB-2   1 1
No Yes Sphingobium japonicum UT26S   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum sp. B510   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Methylocella silvestris BL2   2 2
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Hyphomicrobium sp. MC1   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Marinobacter adhaerens HP15   1 1
No Yes Methylomonas methanica MC09   1 1
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Pseudoxanthomonas spadix BD-a59   2 2
No Yes Azotobacter vinelandii DJ   2 2
No Yes Acinetobacter oleivorans DR1   1 1
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Sulfolobus islandicus Y.N.15.51   1 1
No Yes Sulfolobus solfataricus P2   1 1
No Yes Pyrobaculum arsenaticum DSM 13514   1 1
No Yes Frankia sp. CcI3   2 2
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Sulfobacillus acidophilus TPY   3 3
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Pandoraea pnomenusa 3kgm   2 2
No Yes Ralstonia pickettii 12J   2 2
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia lata   1 1
No Yes Burkholderia cepacia GG4   1 1
No Yes Alicycliphilus denitrificans BC   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Paracoccus aminophilus JCM 7686   1 1
No Yes Bradyrhizobium sp. BTAi1   2 2
No Yes Bradyrhizobium oligotrophicum S58   2 2
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Azotobacter vinelandii CA6   2 2
No Yes Azotobacter vinelandii CA   2 2
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter radioresistens SH164   1 1
No Yes Cycloclasticus zancles 7-ME   2 2
No Yes Sulfolobus islandicus REY15A   1 1
No Yes Sulfolobus islandicus HVE10/4   1 1
No Yes Sulfolobus islandicus L.S.2.15   1 1
No Yes Sulfolobus islandicus M.16.4   1 1
No Yes Sulfolobus islandicus L.D.8.5   1 1
No Yes Sulfolobus solfataricus 98/2   1 1
No Yes 3_050719R (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Combined (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   2 2
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   2 2
No Yes NCBI 2017_08 genome   2151 2151
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   3 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   4 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   60 60
No Yes Uniprot 2018_03 genome   1197 1197
No Yes Global Ocean Sampling Expedition (GOS)   2 2
No Yes NCBI plasmid sequences (Plasmids)   18 18
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   36 36
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   77 77

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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