SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > PDB chains (SCOP 1.75) > Plant inhibitors of proteinases and amylases domains


Plant inhibitors of proteinases and amylases superfamily domain assignments
in
PDB chains (SCOP 1.75)

Network of domain occurrence in all genomes

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 18 significant domains in 18 proteins.

     

Sequence ID   Evalue   Region   Family  
1clvI   1.71e-20   1-32   Plant inhibitors of proteinases and amylases  
1f2sI   0.00000000000104   4-28   Plant inhibitors of proteinases and amylases  
1h20A   3.71e-23   2-39   Plant inhibitors of proteinases and amylases  
1h9hI   0.00000000000182   2-29   Plant inhibitors of proteinases and amylases  
1h9iI   0.0000000000104   2-29   Plant inhibitors of proteinases and amylases  
1ha9A   0.00000000000000208   9-34   Plant inhibitors of proteinases and amylases  
1lu0A   0.0000000000000147   4-29   Plant inhibitors of proteinases and amylases  
1mctI   0.00000000000113   4-28   Plant inhibitors of proteinases and amylases  
1mcvI   0.0000000000779   7-28   Plant inhibitors of proteinases and amylases  
1w7zA   0.00000000000104   2-29   Plant inhibitors of proteinases and amylases  
2btcI   0.00000000000000113   4-29   Plant inhibitors of proteinases and amylases  
2c4bA   0.000000000000113   117-142   Plant inhibitors of proteinases and amylases  
2it7A   0.00000000000000952   3-28   Plant inhibitors of proteinases and amylases  
2it8A   0.00000000000204   1-29   Plant inhibitors of proteinases and amylases  
2letA   0.00000000000026   3-28   Plant inhibitors of proteinases and amylases  
2po8A   0.00000000000000208   2-27   Plant inhibitors of proteinases and amylases  
2staI   5.45e-16   4-29   Plant inhibitors of proteinases and amylases  
4cpaI   4.38e-22   2-38   Plant inhibitors of proteinases and amylases  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Plant inhibitors of proteinases and amylases domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   320 320
No Yes Cucumis sativus v122 Cucumber 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 3 3
No Yes Solanum tuberosum Potato 2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 3 3
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 3 3
No Yes NCBI 2017_08 genome   20 19
No Yes Uniprot 2018_03 genome   117 75
No Yes PDB chains (SCOP 1.75) (PDB)   18 18
No Yes Protein Data Bank (all PDB sequenc)   50 50
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   94 94

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.