SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Plant invertase/pectin methylesterase inhibitor domains


Plant invertase/pectin methylesterase inhibitor family domain assignments


No domain assignments for these genomes.

Add assignments from groups of genomes

View all assignments containing a Plant invertase/pectin methylesterase inhibitor domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   749 749
No Yes Eucalyptus grandis v201 Rose gum 4 4
No Yes Theobroma cacao B97-61/B2 v1 Cacao 3 3
No Yes Gossypium raimondii v221   3 3
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 1 1
No Yes Thellungiella halophila v173   5 5
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 5 5
No Yes Capsella rubella v183   4 4
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 3 3
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 4 4
No Yes Phaseolus vulgaris v186 French bean 4 4
No Yes Glycine max v109 Soybean 7 7
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Fragaria vesca Wild strawberry 4 4
No Yes Malus domestica v196 Apple 9 9
No Yes Prunus persica v139 Peach 4 4
No Yes Linum usitatissimum v200 Flax 11 11
No Yes Manihot esculenta v147 Cassava 4 4
No Yes Populus trichocarpa v156 Black cottonwood 2 2
No Yes Mimulus guttatus v140 Spotted monkey flower 3 3
No Yes Solanum lycopersicum v.2.3 Tomato 3 3
No Yes Solanum tuberosum Potato 4 4
No Yes Actinidia chinensis Hongyang   3 3
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 3 3
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Malus x domestica (Duplicate) Apple 9 9
No Yes Ricinus communis (Early assembly) Castor bean 2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   5 5
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 3 3
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 3 3
No Yes Arabidopsis thaliana 10 Thale cress 3 3
No Yes NCBI 2017_08 genome   226 225
No Yes STRING v9.0.5 (STRING)   11 11
No Yes Uniprot 2018_03 genome   230 228
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   24 24
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   75 75
No Yes TargetDB (Targets)   4 4

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.