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Relaxase domain family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   16303 16303
No Yes Acaryochloris marina MBIC11017   9 9
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7120   1 1
No Yes Mycobacterium marinum M   1 1
No Yes Corynebacterium efficiens YS-314   1 1
No Yes Sulfobacillus acidophilus DSM 10332   1 1
No Yes Niastella koreensis GR20-10   2 2
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Opitutus terrae PB90-1   3 3
No Yes Granulicella tundricola MP5ACTX9   4 4
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus saanensis SP1PR4   3 3
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Acidobacterium capsulatum ATCC 51196   3 3
No Yes Leptospirillum ferrooxidans C2-3   1 1
No Yes Acidithiobacillus ferrivorans SS3   1 1
No Yes Acidithiobacillus caldus SM-1   1 1
No Yes Sulfurospirillum barnesii SES-3   1 1
No Yes Sulfurimonas denitrificans DSM 1251   1 1
No Yes Nitratiruptor sp. SB155-2   1 1
No Yes Geobacter sp. M21   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes beta proteobacterium CB   1 1
No Yes Thiomonas arsenitoxydans   1 1
No Yes Thiomonas intermedia K12   1 1
No Yes Burkholderia rhizoxinica HKI 454   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   2 2
No Yes Burkholderia gladioli BSR3   2 2
No Yes Burkholderia glumae BGR1   3 3
No Yes Alicycliphilus denitrificans K601   1 1
No Yes Delftia sp. Cs1-4   1 1
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. JS42   1 1
No Yes Pusillimonas sp. T7-7   2 2
No Yes Bordetella petrii DSM 12804   1 1
No Yes Thiobacillus denitrificans ATCC 25259   2 2
No Yes Parvularcula bermudensis HTCC2503   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Erythrobacter litoralis HTCC2594   3 3
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium sp. PP1Y   3 3
No Yes Novosphingobium aromaticivorans DSM 12444   2 2
No Yes Sphingobium japonicum UT26S   1 1
No Yes Sphingobium chlorophenolicum L-1   1 1
No Yes Sphingomonas sp. MM-1   1 1
No Yes Sphingomonas wittichii RW1   2 2
No Yes Azospirillum lipoferum 4B   1 1
No Yes Granulibacter bethesdensis CGDNIH1   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Candidatus Puniceispirillum marinum IMCC1322   1 1
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Aeromonas salmonicida subsp. salmonicida A449   2 2
No Yes Aliivibrio salmonicida LFI1238   1 1
No Yes Photobacterium profundum SS9   1 1
No Yes Shewanella baltica OS185   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas albilineans GPE PC73   2 2
No Yes Halothiobacillus neapolitanus c2   1 1
No Yes Legionella longbeachae NSW150   2 2
No Yes Yersinia pestis Pestoides F   1 1
No Yes Pantoea sp. At-9b   2 2
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella dysenteriae Sd197   2 2
No Yes Klebsiella oxytoca E718   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Enterobacter sp. 638   1 1
No Yes Enterobacter asburiae LF7a   1 1
No Yes Chamaesiphon minutus PCC 6605   2 2
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Cyanothece sp. PCC 7822   2 2
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanothece sp. ATCC 51142   2 2
No Yes Mycobacterium abscessus subsp. bolletii 50594   2 2
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Sulfobacillus acidophilus TPY   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Leptospirillum ferriphilum ML-04   2 2
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Burkholderia sp. YI23   2 2
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans H24   1 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Vibrio vulnificus CMCP6   1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS223   3 3
No Yes Shewanella baltica OS195   2 2
No Yes Shewanella sp. MR-7   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Legionella pneumophila str. Paris   1 1
No Yes Legionella pneumophila str. Lens   1 1
No Yes Legionella pneumophila subsp. pneumophila LPE509   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Shigella flexneri 2002017   2 2
No Yes Shigella flexneri 2a str. 301   2 2
No Yes Shigella dysenteriae 1617   2 2
No Yes Shigella boydii Sb227   2 2
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   2 2
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2071   1 1
No Yes Escherichia coli O104:H4 str. 2011C-3493   1 1
No Yes Escherichia coli NA114   1 1
No Yes Escherichia coli UM146   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli APEC O1   1 1
No Yes Escherichia coli O103:H2 str. 12009   1 1
No Yes Escherichia coli UTI89   1 1
No Yes Escherichia coli ETEC H10407   1 1
No Yes Escherichia coli O26:H11 str. 11368   1 1
No Yes Escherichia coli O111:H- str. 11128   1 1
No Yes Escherichia coli O127:H6 str. E2348/69   1 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   2 2
No Yes Pseudomonas putida HB3267   1 1
No Yes Acinetobacter baumannii BJAB0868   1 1
No Yes Acinetobacter baumannii BJAB07104   1 1
No Yes Acinetobacter baumannii TCDC-AB0715   1 1
No Yes Acinetobacter baumannii MDR-TJ   1 1
No Yes Acinetobacter baumannii 1656-2   1 1
No Yes Acinetobacter baumannii ACICU   1 1
No Yes Acinetobacter johnsonii SH046   1 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   3 3
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 3
No Yes Combined (meta-genome)   4 4
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   5 5
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   4 4
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   3 3
No Yes Dump bottom (Dump bottom) (meta-genome)   3 3
No Yes Dump top (Dump top) (meta-genome)   4 4
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   6 6
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   9 9
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   6 6
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes NCBI 2017_08 genome   12938 12937
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   3 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   4 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   5 5
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Sludge/US, Jazz Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   106 106
No Yes Uniprot 2018_03 genome   2479 2479
No Yes Global Ocean Sampling Expedition (GOS)   12 12
No Yes NCBI plasmid sequences (Plasmids)   308 308
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   19 19
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   35 35
No Yes TargetDB (Targets)   3 3
No Yes The Salmonella enterica Pan-genome (meta-genome)   6 6

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