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Galacturonase family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   18421 18421
No Yes Adineta vaga   2 2
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Mortierella verticillata NRRL 6337   1 1
No Yes Phycomyces blakesleeanus   8 8
No Yes Rhizopus oryzae RA 99-880   17 17
No Yes Mucor circinelloides   2 2
No Yes Rhizomucor miehei CAU432   3 3
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Microbotryum violaceum 22   4 4
No Yes Sphaerobolus stellatus v1.0   10 10
No Yes Piloderma croceum F 1598 v1.0   4 4
No Yes Serpula lacrymans var. lacrymans S7.9   4 4
No Yes Coniophora puteana   7 7
No Yes Hydnomerulius pinastri v2.0   5 5
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   2 2
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   3 3
No Yes Pleurotus ostreatus Oyster mushroom 3 3
No Yes Amanita thiersii Skay4041 v1.0   3 3
No Yes Galerina marginata v1.0   13 13
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   2 2
No Yes Agaricus bisporus var. bisporus   2 2
No Yes Schizophyllum commune   2 2
No Yes Stereum hirsutum FP-91666 SS1 v1.0   12 12
No Yes Heterobasidion annosum   4 4
No Yes Gloeophyllum trabeumv1.0   4 4
No Yes Punctularia strigosozonata v1.0   9 9
No Yes Sebacina vermifera MAFF 305830 v1.0   6 6
No Yes Fomitiporia mediterranea v1.0   10 10
No Yes Tulasnella calospora AL13/4D v1.0   5 5
No Yes Postia placenta   6 6
No Yes Wolfiporia cocos MD-104 SS10 v1.0   4 4
No Yes Fomitopsis pinicolav1.0   7 7
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   7 7
No Yes Phanerochaete chrysosporium RP-78 2.1   3 3
No Yes Dichomitus squalens   4 4
No Yes Trametes versicolor v1.0   7 7
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   2 2
No Yes Magnaporthe poae ATCC 64411 22   1 1
No Yes Magnaporthe grisea 70-15   2 2
No Yes Thielavia terrestris NRRL 8126   6 6
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 14 14
No Yes Verticillium albo-atrum VaMs.102   2 2
No Yes Verticillium dahliae VdLs.17   5 5
No Yes Glomerella graminicola 22   5 5
No Yes Fusarium graminearum   3 3
No Yes Nectria haematococca mpVI   6 6
No Yes Fusarium oxysporum f. sp. lycopersici 4286   10 10
No Yes Fusarium verticillioides 7600   5 5
No Yes Trichoderma asperellum CBS 433.97 v1.0   4 4
No Yes Trichoderma atroviride   4 4
No Yes Trichoderma citrinoviride v1.0   2 2
No Yes Trichoderma reesei 1.2   2 2
No Yes Trichoderma virens Gv29-8   3 3
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 2
No Yes Botrytis cinerea B05.10   12 12
No Yes Sclerotinia sclerotiorum   11 11
No Yes Didymella exigua CBS 183.55 v1.0   10 10
No Yes Leptosphaeria maculans 22   6 6
No Yes Setosphaeria turcica v1.0   5 5
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   4 4
No Yes Cochliobolus victoriae FI3 v1.0   3 3
No Yes Cochliobolus carbonum 26-R-13 v1.0   3 3
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 3 3
No Yes Alternaria brassicicola   5 5
No Yes Cochliobolus lunatus m118 v2.0   3 3
No Yes Pyrenophora teres f. teres 22   5 5
No Yes Pyrenophora tritici-repentis   6 6
No Yes Stagonospora nodorum   3 3
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   2 2
No Yes Dothistroma septosporum   2 2
No Yes Septoria musiva v1.0   3 3
No Yes Mycosphaerella fijiensis CIRAD86   3 3
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   7 7
No Yes Aspergillus zonatus v1.0   7 7
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 2
No Yes Penicillium chrysogenum v1.0   2 2
No Yes Aspergillus acidus v1.0   14 14
No Yes Aspergillus fumigatus Af293   6 6
No Yes Aspergillus brasiliensis v1.0   14 14
No Yes Aspergillus nidulans FGSC A4   7 7
No Yes Aspergillus sydowii v1.0   8 8
No Yes Aspergillus versicolor v1.0   7 7
No Yes Aspergillus glaucus   2 2
No Yes Aspergillus carbonarius ITEM 5010   13 13
No Yes Neosartorya fischeri NRRL 181   8 8
No Yes Aspergillus terreus NIH2624   4 4
No Yes Aspergillus tubingensis v1.0   14 14
No Yes Aspergillus wentii v1.0   7 7
No Yes Aspergillus oryzae RIB40   12 12
No Yes Aspergillus niger 22   15 15
No Yes Aspergillus niger ATCC 1015   13 13
No Yes Aspergillus flavus NRRL3357   11 11
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   6 6
No Yes Tuber melanosporum Mel28 22   2 2
No Yes Tuber melanosporum Vittad Perigord truffle 2 2
No Yes Lachancea kluyveri   1 1
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Saccharomyces mikatae MIT   2 2
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 1 1
No Yes Saccharomyces bayanus MIT   4 4
No Yes Allomyces macrogynus ATCC 38327   4 4
No Yes Selaginella moellendorffii   11 11
No Yes Pinus taeda Loblolly pine 11 11
No Yes Picea abies Norway spruce 8 8
No Yes Eucalyptus grandis v201 Rose gum 28 28
No Yes Theobroma cacao B97-61/B2 v1 Cacao 17 17
No Yes Gossypium raimondii v221   26 26
No Yes Citrus clementina v165   21 21
No Yes Citrus sinensis v154 Sweet orange 11 11
No Yes Thellungiella halophila v173   30 30
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 43 43
No Yes Capsella rubella v183   26 26
No Yes Arabidopsis lyrata Lyrate rockcress 30 30
No Yes Arabidopsis thaliana 10 Thale cress 30 30
No Yes Carica papaya Papaya 15 15
No Yes Medicago truncatula Barrel medic 38 38
No Yes Phaseolus vulgaris v186 French bean 30 30
No Yes Glycine max v109 Soybean 37 37
No Yes Cucumis sativus v122 Cucumber 22 22
No Yes Fragaria vesca Wild strawberry 23 23
No Yes Malus domestica v196 Apple 26 26
No Yes Prunus persica v139 Peach 20 20
No Yes Linum usitatissimum v200 Flax 29 29
No Yes Manihot esculenta v147 Cassava 25 25
No Yes Populus trichocarpa v156 Black cottonwood 45 45
No Yes Vitis vinifera Wine grape 18 18
No Yes Mimulus guttatus v140 Spotted monkey flower 23 23
No Yes Solanum lycopersicum v.2.3 Tomato 23 23
No Yes Solanum tuberosum Potato 18 18
No Yes Actinidia chinensis Hongyang   7 7
No Yes Aquilegia coerulea v195   28 28
No Yes Triticum urartu 22   11 11
No Yes Triticum aestivum 22 Bread wheat 28 28
No Yes Aegilops tauschii 22   16 16
No Yes Brachypodium distachyon Stiff brome 16 16
No Yes Oryza barthii 22 African wild rice 13 13
No Yes Oryza meridionalis 22   13 13
No Yes Oryza glumaepatula 22   14 14
No Yes Oryza glaberrima African rice 17 17
No Yes Oryza punctata 22   14 14
No Yes Oryza nivara 22   18 18
No Yes Oryza brachyantha 22 Malo sina 16 16
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 22 22
No Yes Oryza sativa v193 Rice 22 22
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 6 6
No Yes Panicum virgatum v202 Switchgrass 30 30
No Yes Setaria italica v164 Foxtail millet 17 17
No Yes Zea mays subsp. mays Maize 16 16
No Yes Zea mays v181 Maize 18 18
No Yes Sorghum bicolor Sorghum 11 11
No Yes Musa balbisiana Balbis banana 14 14
No Yes Musa acuminata 22 Wild Malaysian banana 28 27
No Yes Amborella trichopoda 22   10 10
No Yes Physcomitrella patens   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   3 3
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   3 3
No Yes Pythium ultimum v1.7-2   3 3
No Yes Pythium aphanidermatum DAOM BR444 22   4 4
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   4 4
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 16 16
No Yes Phytophthora sojae 1.1   24 24
No Yes Phytophthora infestans T30-4   21 21
No Yes Phytophthora capsici   17 17
No Yes Hyaloperonospora arabidopsidis 22   3 3
No Yes Catenulispora acidiphila DSM 44928   2 2
No Yes Leifsonia xyli subsp. xyli str. CTCB07   1 1
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   1 1
No Yes Brachybacterium faecium DSM 4810   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Clostridium phytofermentans ISDg   1 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Caldicellulosiruptor obsidiansis OB47   1 1
No Yes Caldicellulosiruptor owensensis OL   1 1
No Yes Caldicellulosiruptor lactoaceticus 6A   1 1
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   1 1
No Yes Caldicellulosiruptor bescii DSM 6725   1 1
No Yes Thermoanaerobacterium thermosaccharolyticum DSM 571   1 1
No Yes Melissococcus plutonius DAT561   1 1
No Yes Enterococcus faecium Aus0004   1 1
No Yes Paenibacillus terrae HPL-003   1 1
No Yes Paenibacillus polymyxa M1   1 1
No Yes Solibacillus silvestris StLB046   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Bacteroides vulgatus ATCC 8482   1 1
No Yes Pedobacter saltans DSM 12145   1 1
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Flavobacterium johnsoniae UW101   1 1
No Yes Opitutus terrae PB90-1   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   2 2
No Yes Granulicella tundricola MP5ACTX9   4 4
No Yes Granulicella mallensis MP5ACTX8   3 3
No Yes Terriglobus saanensis SP1PR4   2 2
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Acidobacterium capsulatum ATCC 51196   2 2
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia glumae BGR1   2 2
No Yes Collimonas fungivorans Ter331   1 1
No Yes Methylobacterium sp. 4-46   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Frateuria aurantia DSM 6220   2 2
No Yes Xylella fastidiosa M23   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   2 2
No Yes Xanthomonas albilineans GPE PC73   2 2
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   2 2
No Yes Legionella longbeachae NSW150   1 1
No Yes Dickeya zeae Ech1591   1 1
No Yes Pectobacterium wasabiae WPP163   2 2
No Yes Pectobacterium sp. SCC3193   2 2
No Yes Pectobacterium atrosepticum SCRI1043   2 2
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   3 3
No Yes Pantoea sp. At-9b   1 1
No Yes Pantoea ananatis LMG 20103   1 1
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Enterobacter sp. 638   1 1
No Yes Enterobacter asburiae LF7a   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Aspergillus fumigatus A1163   6 6
No Yes Saccharomyces cerevisiae PW5   1 1
No Yes Saccharomyces cerevisiae FL100   1 1
No Yes Saccharomyces cerevisiae CLIB382   1 1
No Yes Saccharomyces cerevisiae CLIB324   1 1
No Yes Saccharomyces cerevisiae CBS7960   1 1
No Yes Saccharomyces cerevisiae YJM269   1 1
No Yes Saccharomyces cerevisiae T7   1 1
No Yes Saccharomyces cerevisiae FostersB   1 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae VL3   1 1
No Yes Saccharomyces cerevisiae Vin13   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Saccharomyces cerevisiae Sigma1278b   1 1
No Yes Saccharomyces cerevisiae W303   1 1
No Yes Saccharomyces cerevisiae CLIB215   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 16 16
No Yes Hordeum vulgare 22 Domesticated barley 12 12
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 19 19
No Yes Leifsonia xyli subsp. cynodontis DSM 46306   2 2
No Yes Clavibacter michiganensis subsp. sepedonicus   1 1
No Yes Clavibacter michiganensis subsp. nebraskensis NCPPB 2581   1 1
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   2 2
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Thermoanaerobacterium thermosaccharolyticum M0795   1 1
No Yes Melissococcus plutonius ATCC 35311   1 1
No Yes Enterococcus mundtii QU 25   1 1
No Yes Enterococcus casseliflavus EC20   1 1
No Yes Enterococcus faecium Aus0085   1 1
No Yes Enterococcus faecium NRRL B-2354   1 1
No Yes Enterococcus faecium DO   1 1
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Paenibacillus polymyxa E681   1 1
No Yes Bacillus infantis NRRL B-14911   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Ralstonia solanacearum FQY_4   2 2
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   2 2
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Gluconobacter oxydans H24   1 1
No Yes Acetobacter pasteurianus 386B   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Xylella fastidiosa subsp. fastidiosa GB514   1 1
No Yes Xylella fastidiosa M12   1 1
No Yes Xylella fastidiosa Temecula1   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   2 2
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   2 2
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   2 2
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Xanthomonas campestris pv. raphani 756C   2 2
No Yes Xanthomonas campestris pv. campestris str. 8004   2 2
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   2 2
No Yes Dickeya dadantii 3937   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   2 2
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis PA13   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   2 2
No Yes Moniliophthora perniciosa FA553 (Genome survey)   2 2
No Yes Lotus japonicus (Early assembly)   15 15
No Yes Malus x domestica (Duplicate) Apple 26 26
No Yes Ricinus communis (Early assembly) Castor bean 21 21
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   12 12
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 23 23
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 23 23
No Yes Phoenix dactylifera (Early draft) Date palm 6 6
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 1 1
No Yes Arabidopsis thaliana 10 Thale cress 29 29
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   1 1
No Yes Combined (meta-genome)   2 2
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   2 2
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes NCBI 2017_08 genome   7451 7449
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   392 392
No Yes Uniprot 2018_03 genome   7193 7182
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   20 20
No Yes PDB chains (SCOP 1.75) (PDB)   7 7
No Yes Protein Data Bank (all PDB sequenc)   24 24
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   75 75

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.