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Pectin methylesterase family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   26862 26862
No Yes Phycomyces blakesleeanus   3 3
No Yes Rhizopus oryzae RA 99-880   5 5
No Yes Rhizomucor miehei CAU432   2 2
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   3 3
No Yes Piloderma croceum F 1598 v1.0   2 2
No Yes Serpula lacrymans var. lacrymans S7.9   1 1
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   2 2
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Galerina marginata v1.0   1 1
No Yes Laccaria bicolor S238N-H82   2 2
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   3 3
No Yes Heterobasidion annosum   2 2
No Yes Sebacina vermifera MAFF 305830 v1.0   3 3
No Yes Fomitiporia mediterranea v1.0   2 2
No Yes Tulasnella calospora AL13/4D v1.0   6 6
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   2 2
No Yes Magnaporthe poae ATCC 64411 22   1 1
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   2 2
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 6 4
No Yes Verticillium albo-atrum VaMs.102   2 2
No Yes Verticillium dahliae VdLs.17   3 3
No Yes Glomerella graminicola 22   2 2
No Yes Fusarium graminearum   4 2
No Yes Nectria haematococca mpVI   5 3
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 2
No Yes Fusarium verticillioides 7600   3 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 2
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Botrytis cinerea B05.10   2 2
No Yes Sclerotinia sclerotiorum   4 4
No Yes Didymella exigua CBS 183.55 v1.0   4 3
No Yes Leptosphaeria maculans 22   2 2
No Yes Setosphaeria turcica v1.0   2 2
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 2
No Yes Cochliobolus victoriae FI3 v1.0   2 2
No Yes Cochliobolus carbonum 26-R-13 v1.0   2 2
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 2
No Yes Alternaria brassicicola   4 3
No Yes Cochliobolus lunatus m118 v2.0   2 2
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   3 2
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Dothistroma septosporum   1 1
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   5 3
No Yes Aspergillus zonatus v1.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   2 2
No Yes Aspergillus fumigatus Af293   3 2
No Yes Aspergillus brasiliensis v1.0   2 2
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Aspergillus carbonarius ITEM 5010   2 2
No Yes Neosartorya fischeri NRRL 181   4 2
No Yes Aspergillus tubingensis v1.0   2 2
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   3 3
No Yes Aspergillus niger 22   2 2
No Yes Aspergillus niger ATCC 1015   2 2
No Yes Aspergillus flavus NRRL3357   3 3
No Yes Aspergillus clavatus NRRL 1   3 1
No Yes Penicillium marneffei ATCC 18224   2 2
No Yes Selaginella moellendorffii   43 43
No Yes Pinus taeda Loblolly pine 104 95
No Yes Picea abies Norway spruce 59 58
No Yes Eucalyptus grandis v201 Rose gum 30 30
No Yes Theobroma cacao B97-61/B2 v1 Cacao 46 44
No Yes Gossypium raimondii v221   93 93
No Yes Citrus clementina v165   54 54
No Yes Citrus sinensis v154 Sweet orange 59 59
No Yes Thellungiella halophila v173   60 60
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 108 108
No Yes Capsella rubella v183   71 71
No Yes Arabidopsis lyrata Lyrate rockcress 70 70
No Yes Arabidopsis thaliana 10 Thale cress 67 67
No Yes Carica papaya Papaya 42 42
No Yes Medicago truncatula Barrel medic 99 99
No Yes Phaseolus vulgaris v186 French bean 79 79
No Yes Glycine max v109 Soybean 125 125
No Yes Cucumis sativus v122 Cucumber 54 54
No Yes Fragaria vesca Wild strawberry 58 56
No Yes Malus domestica v196 Apple 92 91
No Yes Prunus persica v139 Peach 66 66
No Yes Linum usitatissimum v200 Flax 95 92
No Yes Manihot esculenta v147 Cassava 80 79
No Yes Populus trichocarpa v156 Black cottonwood 81 81
No Yes Vitis vinifera Wine grape 50 49
No Yes Mimulus guttatus v140 Spotted monkey flower 73 73
No Yes Solanum lycopersicum v.2.3 Tomato 66 66
No Yes Solanum tuberosum Potato 75 75
No Yes Actinidia chinensis Hongyang   58 58
No Yes Aquilegia coerulea v195   63 63
No Yes Triticum urartu 22   31 31
No Yes Triticum aestivum 22 Bread wheat 57 57
No Yes Aegilops tauschii 22   33 33
No Yes Brachypodium distachyon Stiff brome 27 27
No Yes Oryza barthii 22 African wild rice 40 39
No Yes Oryza meridionalis 22   40 40
No Yes Oryza glumaepatula 22   39 38
No Yes Oryza glaberrima African rice 28 28
No Yes Oryza punctata 22   45 43
No Yes Oryza nivara 22   45 44
No Yes Oryza brachyantha 22 Malo sina 34 34
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 44 44
No Yes Oryza sativa v193 Rice 44 44
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 20 20
No Yes Panicum virgatum v202 Switchgrass 63 63
No Yes Setaria italica v164 Foxtail millet 38 37
No Yes Zea mays subsp. mays Maize 38 38
No Yes Zea mays v181 Maize 42 42
No Yes Sorghum bicolor Sorghum 39 39
No Yes Musa balbisiana Balbis banana 58 58
No Yes Musa acuminata 22 Wild Malaysian banana 62 62
No Yes Amborella trichopoda 22   35 35
No Yes Physcomitrella patens   43 43
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 11 11
No Yes Phytophthora sojae 1.1   13 13
No Yes Phytophthora infestans T30-4   8 8
No Yes Phytophthora capsici   7 7
No Yes Hyaloperonospora arabidopsidis 22   4 4
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   2 2
No Yes Streptomyces flavogriseus ATCC 33331   2 2
No Yes Streptomyces sp. SirexAA-E   2 2
No Yes Streptomyces bingchenggensis BCW-1   2 2
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces avermitilis MA-4680   2 2
No Yes Streptomyces scabiei 87.22   4 4
No Yes Actinosynnema mirum DSM 43827   4 4
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Actinoplanes sp. N902-109   1 1
No Yes Actinoplanes sp. SE50/110   2 2
No Yes Actinoplanes missouriensis 431   2 2
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter chlorophenolicus A6   2 2
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Clostridium cellulolyticum H10   1 1
No Yes Clostridium thermocellum ATCC 27405   1 1
No Yes Eubacterium eligens ATCC 27750   2 2
No Yes Clostridium phytofermentans ISDg   1 1
No Yes Clostridium lentocellum DSM 5427   2 2
No Yes Roseburia hominis A2-183   1 1
No Yes Clostridium sp. BNL1100   1 1
No Yes Clostridium cellulovorans 743B   2 2
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Caldicellulosiruptor kronotskyensis 2002   2 2
No Yes Caldicellulosiruptor hydrothermalis 108   1 1
No Yes Caldicellulosiruptor owensensis OL   2 2
No Yes Paenibacillus terrae HPL-003   2 2
No Yes Paenibacillus mucilaginosus 3016   8 8
No Yes Paenibacillus polymyxa M1   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus pumilus SAFR-032   1 1
No Yes Melioribacter roseus P3M   1 1
No Yes Niastella koreensis GR20-10   3 3
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Belliella baltica DSM 15883   1 1
No Yes Leadbetterella byssophila DSM 17132   2 2
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Prevotella ruminicola 23   1 1
No Yes Bacteroides salanitronis DSM 18170   4 4
No Yes Bacteroides vulgatus ATCC 8482   2 2
No Yes Bacteroides thetaiotaomicron VPI-5482   2 2
No Yes Pedobacter saltans DSM 12145   3 3
No Yes Pedobacter heparinus DSM 2366   2 2
No Yes Sphingobacterium sp. 21   2 2
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Flavobacterium branchiophilum FL-15   1 1
No Yes Flavobacterium johnsoniae UW101   2 2
No Yes Opitutus terrae PB90-1   1 1
No Yes Sphaerochaeta pleomorpha str. Grapes   1 1
No Yes Sphaerochaeta coccoides DSM 17374   1 1
No Yes Spirochaeta caldaria DSM 7334   1 1
No Yes Thermotoga sp. RQ2   1 1
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   2 2
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Terriglobus saanensis SP1PR4   2 2
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Acidobacterium capsulatum ATCC 51196   2 2
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Asticcacaulis excentricus CB 48   2 2
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Sphingobium chlorophenolicum L-1   1 1
No Yes Hirschia baltica ATCC 49814   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Teredinibacter turnerae T7901   2 2
No Yes Cellvibrio japonicus Ueda107   1 1
No Yes Vibrio furnissii NCTC 11218   1 1
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Marinomonas sp. MWYL1   1 1
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Frateuria aurantia DSM 6220   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Yersinia pseudotuberculosis IP 31758   1 1
No Yes Yersinia pestis Pestoides F   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Serratia sp. ATCC 39006   1 1
No Yes Dickeya dadantii Ech703   1 1
No Yes Dickeya zeae Ech1591   1 1
No Yes Pectobacterium wasabiae WPP163   1 1
No Yes Pectobacterium sp. SCC3193   1 1
No Yes Pectobacterium atrosepticum SCRI1043   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Haloterrigena turkmenica DSM 5511   2 2
No Yes Haloferax volcanii DS2   1 1
No Yes Aspergillus fumigatus A1163   3 2
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 44 44
No Yes Hordeum vulgare 22 Domesticated barley 46 46
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 40 40
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces davawensis JCM 4913   2 2
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   2 2
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Actinoplanes friuliensis DSM 7358   1 1
No Yes Clavibacter michiganensis subsp. nebraskensis NCPPB 2581   2 1
No Yes Bifidobacterium asteroides PRL2011   1 1
No Yes Clostridium thermocellum DSM 1313   1 1
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   1 1
No Yes Faecalibacterium prausnitzii L2-6   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   2 2
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Paenibacillus sp. Y412MC10   2 2
No Yes Paenibacillus mucilaginosus KNP414   8 8
No Yes Paenibacillus mucilaginosus K02   7 7
No Yes Paenibacillus polymyxa CR1   2 2
No Yes Paenibacillus polymyxa SC2   2 2
No Yes Paenibacillus polymyxa E681   2 2
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus infantis NRRL B-14911   2 2
No Yes Rhodothermus marinus SG0.5JP17-172   1 1
No Yes Echinicola vietnamensis DSM 17526   3 3
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Prevotella dentalis DSM 3688   1 1
No Yes Alistipes shahii WAL 8301   1 1
No Yes Bacteroides xylanisolvens XB1A   2 2
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   1 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   1 1
No Yes Alteromonas macleodii ATCC 27126   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis YPIII   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Yersinia pestis A1122   1 1
No Yes Yersinia pestis Z176003   1 1
No Yes Yersinia pestis D182038   1 1
No Yes Yersinia pestis D106004   1 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   1 1
No Yes Yersinia pestis Nepal516   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis Angola   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia pestis KIM10+   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Dickeya dadantii Ech586   1 1
No Yes Dickeya dadantii 3937   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Picea sitchensis (Incomplete) Sitka spruce 4 4
No Yes Lotus japonicus (Early assembly)   64 64
No Yes Malus x domestica (Duplicate) Apple 92 91
No Yes Ricinus communis (Early assembly) Castor bean 54 53
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   112 104
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 65 65
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 66 66
No Yes Phoenix dactylifera (Early draft) Date palm 12 12
No Yes Arabidopsis thaliana 10 Thale cress 66 66
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   5 5
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   2 2
No Yes Combined (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   10275 10217
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   577 570
No Yes Uniprot 2018_03 genome   9882 9687
No Yes NCBI plasmid sequences (Plasmids)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   21 21
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   58 58
No Yes TargetDB (Targets)   5 5

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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