SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain domains


Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain family domain assignments


No domain assignments for these genomes.

Add assignments from groups of genomes

View all assignments containing a Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   76240 76240
No Yes Homo sapiens 76_38 Human 1 1
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 1 1
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Papio anubis 76 Olive baboon 1 1
No Yes Macaca mulatta 76_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 1 1
No Yes Otolemur garnettii 76_3 Small-eared galago 1 1
No Yes Microcebus murinus 76_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 1 1
No Yes Mus musculus 76_38 House mouse 1 1
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Ochotona princeps 76 American pika 1 1
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 2 2
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 1 1
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 1 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 1 1
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 1 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 76_1 Large flying fox 1 1
No Yes Sorex araneus 76_1 European shrew 2 1
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Procavia capensis 76_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 1 1
No Yes Echinops telfairi 76 Small Madagascar hedgehog 2 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 76_5 Platypus 1 1
No Yes Saccoglossus kowalevskii v3.0   1 1
No Yes Meleagris gallopavo 76_2 Turkey 1 1
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 1 1
No Yes Anolis carolinensis 76_2.0 Green anole 1 1
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 1 1
No Yes Latimeria chalumnae 76_1 Coelacanth 1 1
No Yes Lepisosteus oculatus 76 Spotted gar 1 1
No Yes Gadus morhua 76_1 Atlantic cod 1 1
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 76_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 1 1
No Yes Poecilia formosa 76 Amazon molly 1 1
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1 1
No Yes Astyanax mexicanus 76 Mexican tetra 1 1
No Yes Danio rerio 76_9 Zebrafish 1 1
No Yes Oikopleura dioica   1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 1 1
No Yes Adineta vaga   2 2
No Yes Octopus bimaculoides 280   1 1
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Lottia gigantea Owl limpet 1 1
No Yes Helobdella robusta   1 1
No Yes Capitella sp. I   2 2
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   1 1
No Yes Sarcoptes scabiei   1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   1 1
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis brenneri   1 1
No Yes Caenorhabditis remanei   2 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   1 1
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Thelohanellus kitauei   3 3
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 1
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   2 2
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   1 1
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Mortierella verticillata NRRL 6337   1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Allomyces macrogynus ATCC 38327   2 2
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Cyanophora paradoxa   2 2
No Yes Leishmania mexicana 2.4   1 1
No Yes Leishmania major strain Friedlin   1 1
No Yes Leishmania infantum JPCM5 2.4   1 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Aureococcus anophagefferens   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   2 2
No Yes Phytophthora capsici   1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Fragilariopsis cylindrus   2 2
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Naegleria gruberi   1 1
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   6 4
No Yes Thermobaculum terrenum ATCC BAA-798   2 2
No Yes Conexibacter woesei DSM 14684   4 4
No Yes Rubrobacter xylanophilus DSM 9941   2 2
No Yes Ilumatobacter coccineus   3 3
No Yes Acidimicrobium ferrooxidans DSM 10331   3 3
No Yes Thermobispora bispora DSM 43833   3 3
No Yes Nakamurella multipartita DSM 44233   3 3
No Yes Acidothermus cellulolyticus 11B   1 1
No Yes Modestobacter marinus   3 3
No Yes Blastococcus saxobsidens DD2   5 5
No Yes Geodermatophilus obscurus DSM 43160   4 4
No Yes Catenulispora acidiphila DSM 44928   3 3
No Yes Stackebrandtia nassauensis DSM 44728   3 3
No Yes Frankia symbiont of Datisca glomerata   3 3
No Yes Frankia sp. EAN1pec   5 5
No Yes Frankia alni ACN14a   4 4
No Yes Thermobifida fusca YX   3 3
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   3 3
No Yes Thermomonospora curvata DSM 43183   3 3
No Yes Streptosporangium roseum DSM 43021   4 4
No Yes Kitasatospora setae KM-6054   3 3
No Yes Streptomyces coelicolor A3(2)   4 4
No Yes Streptomyces sp. PAMC26508   6 6
No Yes Streptomyces flavogriseus ATCC 33331   6 6
No Yes Streptomyces sp. SirexAA-E   4 4
No Yes Streptomyces griseus subsp. griseus NBRC 13350   4 4
No Yes Streptomyces bingchenggensis BCW-1   6 6
No Yes Streptomyces violaceusniger Tu 4113   6 6
No Yes Streptomyces avermitilis MA-4680   6 6
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   3 3
No Yes Streptomyces scabiei 87.22   6 6
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   5 5
No Yes Actinosynnema mirum DSM 43827   3 3
No Yes Saccharomonospora viridis DSM 43017   3 3
No Yes Pseudonocardia dioxanivorans CB1190   4 4
No Yes Saccharopolyspora erythraea NRRL 2338   2 2
No Yes Amycolatopsis mediterranei U32   4 4
No Yes Kribbella flavida DSM 17836   3 3
No Yes Nocardioides sp. JS614   7 7
No Yes Propionibacterium propionicum F0230a   2 2
No Yes Propionibacterium acnes SK137   2 2
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1   2 2
No Yes Salinispora arenicola CNS-205   3 3
No Yes Salinispora tropica CNB-440   3 3
No Yes Verrucosispora maris AB-18-032   2 2
No Yes Micromonospora sp. L5   3 3
No Yes Micromonospora aurantiaca ATCC 27029   3 3
No Yes Actinoplanes sp. N902-109   4 4
No Yes Actinoplanes sp. SE50/110   2 2
No Yes Actinoplanes missouriensis 431   2 2
No Yes Tsukamurella paurometabola DSM 20162   2 2
No Yes Gordonia sp. KTR9   2 2
No Yes Gordonia polyisoprenivorans VH2   2 2
No Yes Gordonia bronchialis DSM 43247   2 2
No Yes Rhodococcus jostii RHA1   2 2
No Yes Rhodococcus equi 103S   2 2
No Yes Rhodococcus opacus B4   2 2
No Yes Rhodococcus erythropolis PR4   2 2
No Yes Nocardia cyriacigeorgica GUH-2   2 2
No Yes Nocardia farcinica IFM 10152   3 3
No Yes Amycolicicoccus subflavus DQS3-9A1   2 2
No Yes Mycobacterium massiliense str. GO 06   2 2
No Yes Mycobacterium abscessus ATCC 19977   2 2
No Yes Mycobacterium sp. JLS   3 3
No Yes Mycobacterium intracellulare ATCC 13950   3 3
No Yes Mycobacterium avium 104   3 3
No Yes Mycobacterium vanbaalenii PYR-1   3 3
No Yes Mycobacterium canettii CIPT 140010059   2 2
No Yes Mycobacterium africanum GM041182   2 2
No Yes Mycobacterium tuberculosis KZN 1435   2 2
No Yes Mycobacterium tuberculosis   2 2
No Yes Mycobacterium bovis BCG str. Pasteur 1173P2   2 2
No Yes Mycobacterium rhodesiae NBB3   3 3
No Yes Mycobacterium ulcerans Agy99   3 3
No Yes Mycobacterium gilvum PYR-GCK   3 3
No Yes Mycobacterium chubuense NBB4   3 3
No Yes Mycobacterium marinum M   3 3
No Yes Mycobacterium smegmatis str. MC2 155   3 3
No Yes Mycobacterium leprae Br4923   2 2
No Yes Corynebacterium kroppenstedtii DSM 44385   2 2
No Yes Corynebacterium efficiens YS-314   2 2
No Yes Corynebacterium ulcerans 0102   2 2
No Yes Corynebacterium pseudotuberculosis 316   2 2
No Yes Corynebacterium glutamicum R   2 2
No Yes Corynebacterium diphtheriae NCTC 13129   2 2
No Yes Kytococcus sedentarius DSM 20547   2 2
No Yes Intrasporangium calvum DSM 43043   3 3
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   2 2
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Sphaerobacter thermophilus DSM 20745   2 2
No Yes Herpetosiphon aurantiacus DSM 785   2 2
No Yes Roseiflexus sp. RS-1   3 3
No Yes Roseiflexus castenholzii DSM 13941   3 3
No Yes Chloroflexus sp. MS-G   3 3
No Yes Chloroflexus sp. Y-400-fl   3 3
No Yes Chloroflexus aggregans DSM 9485   3 3
No Yes Chloroflexus aurantiacus J-10-fl   3 3
No Yes Truepera radiovictrix DSM 17093   2 2
No Yes Deinococcus gobiensis I-0   2 2
No Yes Deinococcus deserti VCD115   2 2
No Yes Deinococcus maricopensis DSM 21211   2 2
No Yes Deinococcus geothermalis DSM 11300   2 2
No Yes Deinococcus proteolyticus MRP   2 2
No Yes Deinococcus radiodurans R1   2 2
No Yes Oceanithermus profundus DSM 14977   2 2
No Yes Marinithermus hydrothermalis DSM 14884   2 2
No Yes Meiothermus silvanus DSM 9946   2 2
No Yes Meiothermus ruber DSM 1279   2 2
No Yes Thermus sp. CCB_US3_UF1   2 2
No Yes Thermus scotoductus SA-01   2 2
No Yes Thermus thermophilus HB27   2 2
No Yes Veillonella parvula DSM 2008   3 3
No Yes Megamonas hypermegale   3 3
No Yes Selenomonas sputigena ATCC 35185   3 3
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   3 3
No Yes Natranaerobius thermophilus JW/NM-WN-LF   1 1
No Yes Symbiobacterium thermophilum IAM 14863   2 2
No Yes Thermaerobacter marianensis DSM 12885   1 1
No Yes Sulfobacillus acidophilus DSM 10332   2 2
No Yes Pelotomaculum thermopropionicum SI   1 1
No Yes Desulfosporosinus acidiphilus SJ4   2 2
No Yes Desulfosporosinus orientis DSM 765   3 3
No Yes Desulfitobacterium hafniense Y51   1 1
No Yes Desulfitobacterium dehalogenans ATCC 51507   1 1
No Yes Desulfotomaculum reducens MI-1   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   1 1
No Yes Desulfotomaculum kuznetsovii DSM 6115   2 2
No Yes Clostridium sticklandii DSM 519   1 1
No Yes Syntrophothermus lipocalidus DSM 12680   1 1
No Yes Heliobacterium modesticaldum Ice1   2 2
No Yes Alkaliphilus oremlandii OhILAs   1 1
No Yes Alkaliphilus metalliredigens QYMF   1 1
No Yes Thermosediminibacter oceani DSM 16646   2 2
No Yes Thermoanaerobacterium xylanolyticum LX-11   1 1
No Yes Coprothermobacter proteolyticus DSM 5265   1 1
No Yes Tepidanaerobacter acetatoxydans Re1   1 1
No Yes Thermoanaerobacter tengcongensis MB4   2 2
No Yes Thermoanaerobacter pseudethanolicus ATCC 33223   1 1
No Yes Thermoanaerobacter sp. X514   1 1
No Yes Thermoanaerobacter wiegelii Rt8.B1   1 1
No Yes Thermoanaerobacter brockii subsp. finnii Ako-1   1 1
No Yes Kyrpidia tusciae DSM 2912   3 3
No Yes Brevibacillus brevis NBRC 100599   3 3
No Yes Paenibacillus sp. JDR-2   1 1
No Yes Bacillus selenitireducens MLS10   2 2
No Yes Solibacillus silvestris StLB046   2 2
No Yes Geobacillus thermoglucosidasius C56-YS93   3 3
No Yes Lysinibacillus sphaericus C3-41   3 3
No Yes Anoxybacillus flavithermus WK1   3 3
No Yes Geobacillus thermoleovorans CCB_US3_UF5   3 3
No Yes Geobacillus kaustophilus HTA426   3 3
No Yes Geobacillus sp. GHH01   3 3
No Yes Geobacillus sp. WCH70   3 3
No Yes Geobacillus thermodenitrificans NG80-2   3 3
No Yes Halobacillus halophilus DSM 2266   2 2
No Yes Bacillus sp. 1NLA3E   3 3
No Yes Bacillus halodurans C-125   3 3
No Yes Bacillus pseudofirmus OF4   3 3
No Yes Bacillus cellulosilyticus DSM 2522   2 2
No Yes Bacillus megaterium DSM 319   3 3
No Yes Bacillus coagulans 2-6   1 1
No Yes Candidatus Cloacamonas acidaminovorans   2 2
No Yes Gemmatimonas aurantiaca T-27   2 2
No Yes Melioribacter roseus P3M   2 2
No Yes Ignavibacterium album JCM 16511   3 3
No Yes Pelodictyon phaeoclathratiforme BU-1   2 2
No Yes Chlorobium luteolum DSM 273   2 2
No Yes Chlorobium chlorochromatii CaD3   2 2
No Yes Chlorobium phaeobacteroides DSM 266   2 2
No Yes Chlorobium phaeovibrioides DSM 265   2 2
No Yes Chlorobium limicola DSM 245   2 2
No Yes Chlorobaculum parvum NCIB 8327   2 2
No Yes Chloroherpeton thalassium ATCC 35110   2 2
No Yes Prosthecochloris aestuarii DSM 271   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   3 3
No Yes Saprospira grandis str. Lewin   2 2
No Yes Niastella koreensis GR20-10   2 2
No Yes Chitinophaga pinensis DSM 2588   2 2
No Yes Salinibacter ruber M8   3 3
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Flexibacter litoralis DSM 6794   2 2
No Yes Belliella baltica DSM 15883   3 3
No Yes Marivirga tractuosa DSM 4126   3 3
No Yes Fibrella aestuarina   3 3
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Spirosoma linguale DSM 74   3 3
No Yes Runella slithyformis DSM 19594   3 3
No Yes Parabacteroides distasonis ATCC 8503   2 2
No Yes Tannerella forsythia ATCC 43037   2 2
No Yes Paludibacter propionicigenes WB4   2 2
No Yes Odoribacter splanchnicus DSM 20712   2 2
No Yes Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2   2 2
No Yes Bacteroides sp. CF50   2 2
No Yes Prevotella ruminicola 23   2 2
No Yes Porphyromonas asaccharolytica DSM 20707   2 2
No Yes Porphyromonas gingivalis ATCC 33277   2 2
No Yes Alistipes finegoldii DSM 17242   2 2
No Yes Bacteroides salanitronis DSM 18170   2 2
No Yes Bacteroides helcogenes P 36-108   2 2
No Yes Bacteroides vulgatus ATCC 8482   2 2
No Yes Bacteroides thetaiotaomicron VPI-5482   2 2
No Yes Bacteroides fragilis YCH46   2 2
No Yes Solitalea canadensis DSM 3403   4 4
No Yes Pedobacter heparinus DSM 2366   2 2
No Yes Fluviicola taffensis DSM 16823   3 3
No Yes Owenweeksia hongkongensis DSM 17368   3 3
No Yes Zunongwangia profunda SM-A87   3 3
No Yes Krokinobacter sp. 4H-3-7-5   2 2
No Yes Gramella forsetii KT0803   3 3
No Yes Lacinutrix sp. 5H-3-7-4   3 3
No Yes Maribacter sp. HTCC2170   3 3
No Yes Robiginitalea biformata HTCC2501   3 3
No Yes Croceibacter atlanticus HTCC2559   2 2
No Yes Aequorivita sublithincola DSM 14238   3 3
No Yes Zobellia galactanivorans   2 2
No Yes Muricauda ruestringensis DSM 13258   3 3
No Yes Cellulophaga algicola DSM 14237   3 3
No Yes Cellulophaga lytica DSM 7489   3 3
No Yes Flavobacteriaceae bacterium 3519-10   2 2
No Yes Polaribacter sp. MED152   3 3
No Yes Weeksella virosa DSM 16922   3 3
No Yes Flavobacterium indicum GPTSA100-9   2 2
No Yes Flavobacterium psychrophilum JIP02/86   3 3
No Yes Flavobacterium branchiophilum FL-15   3 3
No Yes Flavobacterium columnare ATCC 49512   2 2
No Yes Flavobacterium johnsoniae UW101   3 3
No Yes Waddlia chondrophila WSU 86-1044   1 1
No Yes Isosphaera pallida ATCC 43644   2 2
No Yes Coraliomargarita akajimensis DSM 45221   2 2
No Yes Opitutus terrae PB90-1   2 2
No Yes Akkermansia muciniphila ATCC BAA-835   2 2
No Yes Fretibacterium fastidiosum   1 1
No Yes Thermovirga lienii DSM 17291   1 1
No Yes Aminobacterium colombiense DSM 12261   1 1
No Yes Thermanaerovibrio acidaminovorans DSM 6589   1 1
No Yes Anaerobaculum mobile DSM 13181   1 1
No Yes Turneriella parva DSM 21527   2 2
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550   3 3
No Yes Leptospira interrogans serovar Lai str. IPAV   4 4
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   4 4
No Yes Desulfurispirillum indicum S5   1 1
No Yes Calditerrivibrio nitroreducens DSM 19672   1 1
No Yes Denitrovibrio acetiphilus DSM 12809   1 1
No Yes Deferribacter desulfuricans SSM1   1 1
No Yes Flexistipes sinusarabici DSM 4947   1 1
No Yes Marinitoga piezophila KA3   1 1
No Yes Petrotoga mobilis SJ95   1 1
No Yes Mesotoga prima MesG1.Ag.4.2   1 1
No Yes Kosmotoga olearia TBF 19.5.1   1 1
No Yes Fervidobacterium pennivorans DSM 9078   1 1
No Yes Fervidobacterium nodosum Rt17-B1   1 1
No Yes Thermosipho melanesiensis BI429   1 1
No Yes Thermosipho africanus TCF52B   1 1
No Yes Thermotoga lettingae TMO   1 1
No Yes Thermotoga thermarum DSM 5069   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   4 4
No Yes Candidatus Koribacter versatilis Ellin345   2 2
No Yes Acidobacterium capsulatum ATCC 51196   2 2
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Ilyobacter polytropus DSM 2926   1 1
No Yes Candidatus Methylomirabilis oxyfera   1 1
No Yes Bacteriovorax marinus SJ   2 2
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfarculus baarsii DSM 2075   2 2
No Yes Desulfobacca acetoxidans DSM 11109   1 1
No Yes Desulfomonile tiedjei DSM 6799   3 3
No Yes Syntrophobacter fumaroxidans MPOB   1 1
No Yes Desulfobulbus propionicus DSM 2032   4 4
No Yes Desulfatibacillum alkenivorans AK-01   5 5
No Yes Desulfobacterium autotrophicum HRM2   2 2
No Yes Desulfococcus oleovorans Hxd3   2 2
No Yes Hippea maritima DSM 10411   1 1
No Yes Geobacter daltonii FRC-32   1 1
No Yes Geobacter sp. M21   2 2
No Yes Geobacter uraniireducens Rf4   3 3
No Yes Geobacter lovleyi SZ   1 1
No Yes Geobacter bemidjiensis Bem   2 2
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   3 3
No Yes Pelobacter propionicus DSM 2379   3 3
No Yes Haliangium ochraceum DSM 14365   2 2
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Anaeromyxobacter sp. Fw109-5   3 3
No Yes Anaeromyxobacter dehalogenans 2CP-1   2 2
No Yes Stigmatella aurantiaca DW4/3-1   3 3
No Yes Corallococcus coralloides DSM 2259   3 3
No Yes Myxococcus xanthus DK 1622   3 3
No Yes Myxococcus fulvus HW-1   3 3
No Yes Dechloromonas aromatica RCB   2 2
No Yes Thauera sp. MZ1T   2 2
No Yes Azoarcus sp. KH32C   2 2
No Yes Azoarcus sp. BH72   2 2
No Yes Aromatoleum aromaticum EbN1   3 3
No Yes Dechlorosoma suillum PS   2 2
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   3 3
No Yes beta proteobacterium CB   1 1
No Yes Methylibium petroleiphilum PM1   3 3
No Yes Thiomonas arsenitoxydans   1 1
No Yes Thiomonas intermedia K12   1 1
No Yes Rubrivivax gelatinosus IL144   2 2
No Yes Leptothrix cholodnii SP-6   2 2
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   2 2
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis LMG 19424   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Cupriavidus necator N-1   2 2
No Yes Ralstonia eutropha H16   3 3
No Yes Ralstonia pickettii 12D   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   2 2
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Alicycliphilus denitrificans K601   1 1
No Yes Ramlibacter tataouinensis TTB310   2 2
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   1 1
No Yes Polaromonas sp. JS666   2 2
No Yes Polaromonas naphthalenivorans CJ2   2 2
No Yes Variovorax paradoxus S110   1 1
No Yes Rhodoferax ferrireducens T118   2 2
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   1 1
No Yes Acidovorax sp. JS42   1 1
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Comamonas testosteroni CNB-2   1 1
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Magnetococcus marinus MC-1   1 1
No Yes Brevundimonas subvibrioides ATCC 15264   2 2
No Yes Caulobacter sp. K31   3 3
No Yes Caulobacter crescentus NA1000   3 3
No Yes Caulobacter segnis ATCC 21756   3 3
No Yes Phenylobacterium zucineum HLK1   2 2
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Sphingobium sp. SYK-6   1 1
No Yes Sphingobium japonicum UT26S   1 1
No Yes Sphingobium chlorophenolicum L-1   1 1
No Yes Sphingomonas sp. MM-1   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Maricaulis maris MCS10   2 2
No Yes Hirschia baltica ATCC 49814   4 4
No Yes Hyphomonas neptunium ATCC 15444   3 3
No Yes Dinoroseobacter shibae DFL 12   2 2
No Yes Phaeobacter gallaeciensis 2.10   2 2
No Yes Pseudovibrio sp. FO-BEG1   3 3
No Yes Jannaschia sp. CCS1   2 2
No Yes Ruegeria sp. TM1040   2 2
No Yes Ruegeria pomeroyi DSS-3   2 2
No Yes Roseobacter litoralis Och 149   2 2
No Yes Roseobacter denitrificans OCh 114   2 2
No Yes Rhodobacter sphaeroides ATCC 17029   3 3
No Yes Rhodobacter capsulatus SB 1003   2 2
No Yes Paracoccus denitrificans PD1222   2 2
No Yes Rhodospirillum photometricum DSM 122   2 2
No Yes Tistrella mobilis KA081020-065   3 3
No Yes Magnetospirillum magneticum AMB-1   2 2
No Yes Rhodospirillum centenum SW   1 1
No Yes Rhodospirillum rubrum F11   3 3
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum sp. B510   1 1
No Yes Azospirillum brasilense Sp245   3 3
No Yes Polymorphum gilvum SL003B-26A1   3 3
No Yes Candidatus Puniceispirillum marinum IMCC1322   2 2
No Yes Starkeya novella DSM 506   3 3
No Yes Xanthobacter autotrophicus Py2   5 5
No Yes Azorhizobium caulinodans ORS 571   3 3
No Yes Methylobacterium chloromethanicum CM4   3 3
No Yes Methylobacterium extorquens AM1   3 3
No Yes Methylobacterium sp. 4-46   3 3
No Yes Methylobacterium populi BJ001   3 3
No Yes Methylobacterium nodulans ORS 2060   3 3
No Yes Methylobacterium radiotolerans JCM 2831   3 3
No Yes Parvibaculum lavamentivorans DS-1   2 2
No Yes Ochrobactrum anthropi ATCC 49188   1 1
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella abortus S19   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   2 2
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium radiobacter K84   2 2
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Mesorhizobium sp. BNC1   2 2
No Yes Mesorhizobium opportunistum WSM2075   2 2
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   2 2
No Yes Mesorhizobium loti MAFF303099   2 2
No Yes Methylocella silvestris BL2   2 2
No Yes Beijerinckia indica subsp. indica ATCC 9039   2 2
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   3 3
No Yes Hyphomicrobium sp. MC1   3 3
No Yes Hyphomicrobium denitrificans ATCC 51888   3 3
No Yes Rhodopseudomonas palustris BisA53   3 3
No Yes Nitrobacter winogradskyi Nb-255   2 2
No Yes Nitrobacter hamburgensis X14   2 2
No Yes Bradyrhizobium japonicum USDA 110   2 2
No Yes Bradyrhizobium sp. ORS 278   2 2
No Yes Methylocystis sp. SC2   3 3
No Yes Rhodanobacter denitrificans   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes gamma proteobacterium HdN1   2 2
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Salmonella bongori NCTC 12419   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Cycloclasticus sp. P1   1 1
No Yes Cenarchaeum symbiosum A   1 1
No Yes Candidatus Nitrosopumilus sp. AR2   1 1
No Yes Nitrosopumilus maritimus SCM1   1 1
No Yes Acidilobus saccharovorans 345-15   1 1
No Yes Aeropyrum pernix K1   1 1
No Yes Metallosphaera cuprina Ar-4   1 1
No Yes Metallosphaera sedula DSM 5348   1 1
No Yes Acidianus hospitalis W1   1 1
No Yes Sulfolobus tokodaii str. 7   1 1
No Yes Sulfolobus islandicus Y.N.15.51   1 1
No Yes Sulfolobus solfataricus P2   1 1
No Yes Sulfolobus acidocaldarius DSM 639   1 1
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes Vulcanisaeta distributa DSM 14429   1 1
No Yes halophilic archaeon DL31   2 2
No Yes Ferroglobus placidus DSM 10642   3 3
No Yes Archaeoglobus fulgidus DSM 4304   2 2
No Yes Thermococcus sp. 4557   1 1
No Yes Thermococcus onnurineus NA1   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Thermococcus sibiricus MM 739   1 1
No Yes Thermococcus barophilus MP   1 1
No Yes Pyrococcus sp. ST04   1 1
No Yes Pyrococcus horikoshii OT3   1 1
No Yes Pyrococcus abyssi GE5   1 1
No Yes Pyrococcus furiosus COM1   1 1
No Yes Thermoplasma volcanium GSS1   1 1
No Yes Thermoplasma acidophilum DSM 1728   1 1
No Yes Picrophilus torridus DSM 9790   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   2 2
No Yes Halopiger xanaduensis SH-6   2 2
No Yes Haloterrigena turkmenica DSM 5511   4 4
No Yes Natrinema sp. J7-2   2 2
No Yes Natrialba magadii ATCC 43099   2 2
No Yes Halorubrum lacusprofundi ATCC 49239   2 2
No Yes Haloquadratum walsbyi DSM 16790   1 1
No Yes Halogeometricum borinquense DSM 11551   2 2
No Yes Haloferax mediterranei ATCC 33500   2 2
No Yes Haloferax volcanii DS2   2 2
No Yes Halomicrobium mukohataei DSM 12286   2 2
No Yes Natronomonas pharaonis DSM 2160   2 2
No Yes Haloarcula hispanica ATCC 33960   2 2
No Yes Haloarcula marismortui ATCC 43049   2 2
No Yes Halalkalicoccus jeotgali B3   2 2
No Yes Halobacterium salinarum R1   2 2
No Yes Halobacterium sp. NRC-1   2 2
No Yes Aciduliprofundum sp. MAR08-339   1 1
No Yes Aciduliprofundum boonei T469   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Frankia sp. EuI1c   5 5
No Yes Frankia sp. CcI3   4 4
No Yes Nocardiopsis alba ATCC BAA-2165   3 3
No Yes Streptomyces albus J1074   4 4
No Yes Streptomyces rapamycinicus NRRL 5491   6 6
No Yes Streptomyces davawensis JCM 4913   3 3
No Yes Streptomyces fulvissimus DSM 40593   4 4
No Yes Streptomyces venezuelae ATCC 10712   5 5
No Yes Streptomyces collinus Tu 365   5 5
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   3 3
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   5 5
No Yes Saccharothrix espanaensis DSM 44229   4 4
No Yes Amycolatopsis mediterranei RB   3 3
No Yes Amycolatopsis mediterranei S699   4 4
No Yes Amycolatopsis mediterranei S699   4 4
No Yes Amycolatopsis orientalis HCCB10007   4 4
No Yes Propionibacterium avidum 44067   2 2
No Yes Propionibacterium acnes ATCC 11828   2 2
No Yes Propionibacterium acnes TypeIA2 P.acn31   2 2
No Yes Propionibacterium acnes TypeIA2 P.acn17   2 2
No Yes Propionibacterium acnes TypeIA2 P.acn33   2 2
No Yes Propionibacterium acnes C1   2 2
No Yes Propionibacterium acnes HL096PA1   2 2
No Yes Propionibacterium acnes 6609   2 2
No Yes Propionibacterium acnes 266   2 2
No Yes Propionibacterium acnes KPA171202   2 2
No Yes Propionibacterium acidipropionici ATCC 4875   2 2
No Yes Actinoplanes friuliensis DSM 7358   2 2
No Yes Rhodococcus pyridinivorans SB3094   2 2
No Yes Rhodococcus erythropolis CCM2595   2 2
No Yes Nocardia brasiliensis ATCC 700358   3 3
No Yes Mycobacterium sp. MOTT36Y   3 3
No Yes Mycobacterium sp. JDM601   3 3
No Yes Mycobacterium abscessus subsp. bolletii 50594   2 2
No Yes Mycobacterium liflandii 128FXT   2 2
No Yes Mycobacterium sp. KMS   3 3
No Yes Mycobacterium sp. MCS   3 3
No Yes Mycobacterium yongonense 05-1390   3 3
No Yes Mycobacterium intracellulare MOTT-64   3 3
No Yes Mycobacterium indicus pranii MTCC 9506   3 3
No Yes Mycobacterium intracellulare MOTT-02   3 3
No Yes Mycobacterium avium subsp. paratuberculosis MAP4   3 3
No Yes Mycobacterium avium subsp. paratuberculosis K-10   3 3
No Yes Mycobacterium canettii CIPT 140070017   2 2
No Yes Mycobacterium canettii CIPT 140060008   2 2
No Yes Mycobacterium canettii CIPT 140070008   2 2
No Yes Mycobacterium canettii CIPT 140070010   2 2
No Yes Mycobacterium tuberculosis EAI5/NITR206   2 2
No Yes Mycobacterium tuberculosis EAI5   2 2
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   2 2
No Yes Mycobacterium tuberculosis UT205   2 2
No Yes Mycobacterium tuberculosis RGTB423   1 1
No Yes Mycobacterium tuberculosis CTRI-2   2 2
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   2 2
No Yes Mycobacterium tuberculosis KZN 605   2 2
No Yes Mycobacterium tuberculosis KZN 4207   2 2
No Yes Mycobacterium tuberculosis CCDC5180   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis H37Ra   2 2
No Yes Mycobacterium tuberculosis str. Haarlem   2 2
No Yes Mycobacterium tuberculosis F11   2 2
No Yes Mycobacterium tuberculosis H37Rv   2 2
No Yes Mycobacterium tuberculosis CDC1551   2 2
No Yes Mycobacterium bovis AF2122/97   2 2
No Yes Mycobacterium bovis BCG str. Korea 1168P   2 2
No Yes Mycobacterium bovis BCG str. Mexico   2 2
No Yes Mycobacterium bovis BCG str. Tokyo 172   2 2
No Yes Mycobacterium gilvum Spyr1   3 3
No Yes Mycobacterium smegmatis str. MC2 155   3 3
No Yes Mycobacterium leprae TN   2 2
No Yes Mycobacterium kansasii ATCC 12478   3 3
No Yes Corynebacterium ulcerans BR-AD22   2 2
No Yes Corynebacterium ulcerans 809   2 2
No Yes Corynebacterium argentoratense DSM 44202   2 2
No Yes Corynebacterium pseudotuberculosis 258   2 2
No Yes Corynebacterium pseudotuberculosis Cp162   2 2
No Yes Corynebacterium pseudotuberculosis P54B96   2 2
No Yes Corynebacterium pseudotuberculosis 267   2 2
No Yes Corynebacterium pseudotuberculosis 1/06-A   2 2
No Yes Corynebacterium pseudotuberculosis 42/02-A   2 2
No Yes Corynebacterium pseudotuberculosis 3/99-5   2 2
No Yes Corynebacterium pseudotuberculosis 31   2 2
No Yes Corynebacterium pseudotuberculosis CIP 52.97   2 2
No Yes Corynebacterium pseudotuberculosis PAT10   2 2
No Yes Corynebacterium pseudotuberculosis I19   2 2
No Yes Corynebacterium pseudotuberculosis FRC41   2 2
No Yes Corynebacterium pseudotuberculosis C231   2 2
No Yes Corynebacterium pseudotuberculosis 1002   2 2
No Yes Corynebacterium glutamicum MB001   2 2
No Yes Corynebacterium glutamicum SCgG2   2 2
No Yes Corynebacterium glutamicum SCgG1   2 2
No Yes Corynebacterium glutamicum ATCC 13032   2 2
No Yes Corynebacterium glutamicum ATCC 13032   2 2
No Yes Corynebacterium glutamicum ATCC 13032   2 2
No Yes Corynebacterium diphtheriae BH8   2 2
No Yes Corynebacterium diphtheriae INCA 402   2 2
No Yes Corynebacterium diphtheriae VA01   2 2
No Yes Corynebacterium diphtheriae HC04   2 2
No Yes Corynebacterium diphtheriae HC03   2 2
No Yes Corynebacterium diphtheriae HC02   2 2
No Yes Corynebacterium diphtheriae HC01   2 2
No Yes Corynebacterium diphtheriae 241   2 2
No Yes Corynebacterium diphtheriae CDCE 8392   2 2
No Yes Corynebacterium diphtheriae PW8   2 2
No Yes Corynebacterium diphtheriae C7 (beta)   2 2
No Yes Corynebacterium diphtheriae 31A   2 2
No Yes Deinococcus peraridilitoris DSM 19664   2 2
No Yes Thermus oshimai JL-2   2 2
No Yes Thermus thermophilus JL-18   2 2
No Yes Thermus thermophilus SG0.5JP17-16   2 2
No Yes Thermus thermophilus HB8   2 2
No Yes Sulfobacillus acidophilus TPY   2 2
No Yes Desulfosporosinus meridiei DSM 13257   1 1
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Desulfotomaculum gibsoniae DSM 7213   3 3
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Thermoanaerobacter sp. X513   1 1
No Yes Geobacillus sp. C56-T3   3 3
No Yes Geobacillus sp. Y4.1MC1   3 3
No Yes Geobacillus sp. Y412MC52   3 3
No Yes Geobacillus sp. Y412MC61   3 3
No Yes Bacillus infantis NRRL B-14911   3 3
No Yes Bacillus megaterium WSH-002   3 3
No Yes Bacillus megaterium QM B1551   3 3
No Yes Bacillus coagulans 36D1   1 1
No Yes Chlorobium phaeobacteroides BS1   1 1
No Yes Salinibacter ruber DSM 13855   3 3
No Yes Rhodothermus marinus SG0.5JP17-172   1 1
No Yes Echinicola vietnamensis DSM 17526   2 2
No Yes Emticicia oligotrophica DSM 17448   2 2
No Yes Porphyromonas gingivalis TDC60   2 2
No Yes Porphyromonas gingivalis W83   2 2
No Yes Alistipes shahii WAL 8301   2 2
No Yes Bacteroides xylanisolvens XB1A   2 2
No Yes Bacteroides fragilis 638R   2 2
No Yes Bacteroides fragilis NCTC 9343   2 2
No Yes Nonlabens dokdonensis DSW-6   2 2
No Yes Psychroflexus torquis ATCC 700755   2 2
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197   4 4
No Yes Leptospira interrogans serovar Lai str. 56601   4 4
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   4 4
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   4 4
No Yes Bdellovibrio exovorus JSS   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Desulfobacula toluolica Tol2   2 2
No Yes Geobacter sp. M18   2 2
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Sorangium cellulosum So0157-2   2 2
No Yes Anaeromyxobacter sp. K   2 2
No Yes Anaeromyxobacter dehalogenans 2CP-C   2 2
No Yes Myxococcus stipitatus DSM 14675   3 3
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Polynucleobacter necessarius subsp. necessarius STIR1   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   2 2
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Alicycliphilus denitrificans BC   1 1
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Caulobacter crescentus CB15   3 3
No Yes Phaeobacter gallaeciensis DSM 17395   2 2
No Yes Phaeobacter gallaeciensis DSM 26640   2 2
No Yes Leisingera methylohalidivorans DSM 14336   2 2
No Yes Octadecabacter antarcticus 307   2 2
No Yes Octadecabacter arcticus 238   2 2
No Yes Rhodobacter sphaeroides KD131   3 3
No Yes Rhodobacter sphaeroides ATCC 17025   2 2
No Yes Rhodobacter sphaeroides 2.4.1   2 2
No Yes Paracoccus aminophilus JCM 7686   2 2
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   2 2
No Yes Rhodospirillum rubrum ATCC 11170   3 3
No Yes Methylobacterium extorquens DM4   3 3
No Yes Methylobacterium extorquens PA1   3 3
No Yes Brucella ceti TE10759-12   1 1
No Yes Brucella ceti TE28753-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   1 1
No Yes Brucella melitensis M5-90   1 1
No Yes Brucella melitensis M28   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Brucella abortus A13334   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   2 2
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   2 2
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Mesorhizobium australicum WSM2073   2 2
No Yes Hyphomicrobium nitrativorans NL23   3 3
No Yes Hyphomicrobium denitrificans 1NES1   3 3
No Yes Rhodopseudomonas palustris DX-1   2 2
No Yes Rhodopseudomonas palustris TIE-1   2 2
No Yes Rhodopseudomonas palustris HaA2   2 2
No Yes Rhodopseudomonas palustris BisB5   2 2
No Yes Rhodopseudomonas palustris BisB18   2 2
No Yes Rhodopseudomonas palustris CGA009   2 2
No Yes Bradyrhizobium sp. S23321   2 2
No Yes Bradyrhizobium sp. BTAi1   2 2
No Yes Bradyrhizobium oligotrophicum S58   2 2
No Yes Bradyrhizobium japonicum USDA 6   2 2
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Shigella flexneri 2002017   1 1
No Yes Shigella flexneri 2a str. 2457T   1 1
No Yes Shigella flexneri 2a str. 301   1 1
No Yes Shigella dysenteriae 1617   2 2
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Escherichia coli E24377A   1 1
No Yes Escherichia coli E. coli PMV-1   1 1
No Yes Escherichia coli JJ1886   1 1
No Yes Escherichia coli LY180   1 1
No Yes Escherichia coli APEC O78   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   2 2
No Yes Escherichia coli O104:H4 str. 2009EL-2071   2 2
No Yes Escherichia coli O104:H4 str. 2011C-3493   2 2
No Yes Escherichia coli NA114   1 1
No Yes Escherichia coli P12b   1 1
No Yes Escherichia coli str. 'clone D i2'   1 1
No Yes Escherichia coli str. 'clone D i14'   1 1
No Yes Escherichia coli UM146   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli IHE3034   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli LF82   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli IAI1   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli ATCC 8739   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli APEC O1   1 1
No Yes Escherichia coli O103:H2 str. 12009   1 1
No Yes Escherichia coli UTI89   1 1
No Yes Escherichia coli 536   1 1
No Yes Escherichia coli HS   1 1
No Yes Escherichia coli ETEC H10407   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Escherichia coli O26:H11 str. 11368   1 1
No Yes Escherichia coli CFT073   1 1
No Yes Escherichia coli O111:H- str. 11128   1 1
No Yes Escherichia coli O157:H7 str. TW14359   1 1
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   1 1
No Yes Escherichia coli O157:H7 str. EDL933   1 1
No Yes Escherichia coli str. K-12 substr. MDS42   1 1
No Yes Escherichia coli BW2952   1 1
No Yes Escherichia coli str. K-12 substr. MG1655   1 1
No Yes Escherichia coli str. K-12 substr. W3110   1 1
No Yes Escherichia coli B str. REL606   1 1
No Yes Enterobacter cloacae SCF1   1 1
No Yes Cycloclasticus zancles 7-ME   1 1
No Yes Candidatus Nitrososphaera gargensis Ga9.2   1 1
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   1 1
No Yes Caldisphaera lagunensis DSM 15908   1 1
No Yes Aeropyrum camini SY1 = JCM 12091   1 1
No Yes Sulfolobus islandicus LAL14/1   1 1
No Yes Sulfolobus islandicus REY15A   1 1
No Yes Sulfolobus islandicus HVE10/4   1 1
No Yes Sulfolobus islandicus Y.G.57.14   1 1
No Yes Sulfolobus islandicus L.S.2.15   1 1
No Yes Sulfolobus islandicus M.16.27   1 1
No Yes Sulfolobus islandicus M.14.25   1 1
No Yes Sulfolobus islandicus M.16.4   1 1
No Yes Sulfolobus islandicus L.D.8.5   1 1
No Yes Sulfolobus solfataricus 98/2   1 1
No Yes Sulfolobus acidocaldarius SUSAZ   1 1
No Yes Sulfolobus acidocaldarius Ron12/I   1 1
No Yes Sulfolobus acidocaldarius N8   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   2 2
No Yes Thermococcus sp. AM4   1 1
No Yes Thermococcus sp. CL1   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Pyrococcus sp. NA2   1 1
No Yes Pyrococcus furiosus DSM 3638   1 1
No Yes Ferroplasma acidarmanus fer1   1 1
No Yes Halovivax ruber XH-70   2 2
No Yes Natrinema pellirubrum DSM 15624   2 2
No Yes Natronococcus occultus SP4   2 2
No Yes Natronobacterium gregoryi SP2   2 2
No Yes Haloquadratum walsbyi C23   1 1
No Yes Natronomonas moolapensis 8.8.11   2 2
No Yes Haloarcula hispanica N601   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 1 1
No Yes Homo sapiens (NCBI version) Human 1 1
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1 1
No Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex)   2 2
No Yes Homo sapiens 69_37 Human 1 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 1 1
No Yes Macaca mulatta 69_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 1 1
No Yes Otolemur garnettii 69_3 Small-eared galago 1 1
No Yes Microcebus murinus 69_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 2 2
No Yes Mus musculus 69_38 House mouse 1 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 1 1
No Yes Ochotona princeps 69 American pika 1 1
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 2 2
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 1 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 1 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 69_1 Large flying fox 1 1
No Yes Sorex araneus 69_1 European shrew 2 1
No Yes Erinaceus europaeus 69 Western European hedgehog 1 1
No Yes Procavia capensis 69_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 2 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 2 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 69_5 Platypus 1 1
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 1 1
No Yes Anolis carolinensis 69_2.0 Green anole 1 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 1 1
No Yes Latimeria chalumnae 69_1 Coelacanth 1 1
No Yes Gadus morhua 69_1 Atlantic cod 1 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 69_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 1 1
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 1 1
No Yes Danio rerio 69_9 Zebrafish 1 1
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes 1_050719N (meta-genome)   7 7
No Yes 1_Upper_euphotic (meta-genome)   3 3
No Yes 2_050719S (meta-genome)   10 10
No Yes 3_050719R (meta-genome)   21 21
No Yes 3_Below_base_of_euphotic (meta-genome)   8 8
No Yes 4_050719Q (meta-genome)   24 24
No Yes 4_Deep_abyss (meta-genome)   6 6
No Yes 5_050719P (meta-genome)   26 26
No Yes 5_Below_upper_mesopelagic (meta-genome)   4 4
No Yes 6_Upper_euphotic (meta-genome)   3 3
No Yes 7_Oxygen_minimum_layer (meta-genome)   3 3
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   3 3
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   4 4
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   6 6
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   10 10
No Yes Bath Hot Springs, planktonic community (meta-genome)   4 4
No Yes Combined (meta-genome)   8 8
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   2 2
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   2 2
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   64 64
No Yes Dump top (Dump top) (meta-genome)   56 56
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   9 9
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   13 13
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   10 10
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   24 24
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   9 9
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   9 9
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   12 12
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   3 3
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   15 15
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   13 13
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   25 25
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   21 21
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   15 15
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   22 22
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   15 15
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   8 8
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   4 4
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   20 20
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   20 20
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   75 75
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   18 18
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   8 8
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   29 29
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   17 17
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   9 9
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   35 35
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   5 5
No Yes NCBI 2017_08 genome   48832 48824
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   43 43
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   4 4
No Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome)   2 2
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   4 4
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   28 28
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   20 20
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   28 28
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   17 17
No Yes Sludge/US, Jazz Assembly (meta-genome)   7 7
No Yes Sludge/US, Phrap Assembly (meta-genome)   18 18
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   38 38
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   112 112
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   166 166
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   71 71
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   102 102
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   80 80
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   84 84
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   12 12
No Yes STRING v9.0.5 (STRING)   674 671
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   5 5
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   51 51
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   15 15
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   20242 20214
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   2 2
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   21 21
No Yes Global Ocean Sampling Expedition (GOS)   1377 1377
No Yes NCBI plasmid sequences (Plasmids)   34 34
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   51 51
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   116 116
No Yes TargetDB (Targets)   20 20
No Yes The Salmonella enterica Pan-genome (meta-genome)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.