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Thioltransferase family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   143540 143540
No Yes Homo sapiens 76_38 Human 20 17
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 6 5
No Yes Gorilla gorilla 76_3.1 Western gorilla 12 10
No Yes Pongo abelii 76_2 Sumatran orangutan 11 10
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 5 5
No Yes Papio anubis 76 Olive baboon 8 7
No Yes Macaca mulatta 76_1 Rhesus monkey 15 14
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 12 10
No Yes Otolemur garnettii 76_3 Small-eared galago 7 6
No Yes Microcebus murinus 76_1 Gray mouse lemur 6 5
No Yes Rattus norvegicus 76_5.0 Norway rat 10 9
No Yes Mus musculus 76_38 House mouse 8 7
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 4 4
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 9 8
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 8 7
No Yes Cavia porcellus 76_3 Domestic guinea pig 9 9
No Yes Oryctolagus cuniculus 76_2 Rabbit 9 8
No Yes Ochotona princeps 76 American pika 5 5
No Yes Tupaia belangeri 76 Northern tree shrew 4 4
No Yes Sus scrofa 76_10.2 Pig 10 9
No Yes Bos taurus 76_3.1 Cattle 12 11
No Yes Ovis aries 76_3.1 Sheep 7 6
No Yes Vicugna pacos 76_1 Alpaca 4 4
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 5 5
No Yes Mustela putorius furo 76_1.0 Domestic ferret 7 6
No Yes Ailuropoda melanoleuca 76_1 Giant panda 8 7
No Yes Canis familiaris 76_3.1 Dog 8 7
No Yes Felis catus 76_6.2 Domestic cat 7 7
No Yes Equus caballus 76_2 Horse 7 6
No Yes Myotis lucifugus 76_2.0 Little brown bat 11 8
No Yes Pteropus vampyrus 76_1 Large flying fox 6 5
No Yes Sorex araneus 76_1 European shrew 4 4
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Procavia capensis 76_1 Cape rock hyrax 5 5
No Yes Loxodonta africana 76_3 African savanna elephant 9 8
No Yes Echinops telfairi 76 Small Madagascar hedgehog 5 5
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 14 13
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 6 6
No Yes Macropus eugenii 76_1.0 Tammar wallaby 6 5
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 7 6
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 6 5
No Yes Ornithorhynchus anatinus 76_5 Platypus 3 3
No Yes Saccoglossus kowalevskii v3.0   4 3
No Yes Petromyzon marinus 76_7.0 Sea lamprey 3 2
No Yes Meleagris gallopavo 76_2 Turkey 8 7
No Yes Gallus gallus 76_4 Chicken 6 5
No Yes Anas platyrhynchos 76_1.0 Mallard 6 5
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 8 6
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 5 5
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 6 5
No Yes Anolis carolinensis 76_2.0 Green anole 7 6
No Yes Xenopus laevis African clawed frog 15 15
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 3 2
No Yes Latimeria chalumnae 76_1 Coelacanth 7 7
No Yes Lepisosteus oculatus 76 Spotted gar 7 5
No Yes Gadus morhua 76_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 4 3
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 2 2
No Yes Oryzias latipes 76_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 4 3
No Yes Poecilia formosa 76 Amazon molly 4 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 4 3
No Yes Astyanax mexicanus 76 Mexican tetra 4 4
No Yes Danio rerio 76_9 Zebrafish 4 3
No Yes Oikopleura dioica   1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2 2
No Yes Octopus bimaculoides 280   2 2
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Lottia gigantea Owl limpet 2 2
No Yes Capitella sp. I   3 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   2 2
No Yes Drosophila willistoni 1.3   2 2
No Yes Drosophila pseudoobscura 2.13   2 2
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   1 1
No Yes Drosophila yakuba 1.3   2 2
No Yes Drosophila simulans 1.3   2 2
No Yes Drosophila sechellia 1.3   2 2
No Yes Drosophila melanogaster 76_5 Fruit fly 3 3
No Yes Drosophila erecta 1.3   2 2
No Yes Drosophila ananassae 1.3   2 2
No Yes Drosophila virilis 1.2   2 2
No Yes Drosophila mojavensis 1.3   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   3 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Caenorhabditis brenneri   1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Echinococcus granulosus   1 1
No Yes Schistosoma mansoni   2 2
No Yes Acropora digitifera v1.0   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 3 2
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   1 1
No Yes Sphaeroforma arctica JP610   1 1
No Yes Rhizomucor miehei CAU432   1 1
No Yes Allomyces macrogynus ATCC 38327   2 2
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Selaginella moellendorffii   4 4
No Yes Pinus taeda Loblolly pine 5 4
No Yes Picea abies Norway spruce 2 2
No Yes Eucalyptus grandis v201 Rose gum 8 8
No Yes Theobroma cacao B97-61/B2 v1 Cacao 5 5
No Yes Gossypium raimondii v221   13 13
No Yes Citrus clementina v165   8 8
No Yes Citrus sinensis v154 Sweet orange 7 7
No Yes Thellungiella halophila v173   10 10
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 11 11
No Yes Capsella rubella v183   6 6
No Yes Arabidopsis lyrata Lyrate rockcress 6 6
No Yes Arabidopsis thaliana 10 Thale cress 7 7
No Yes Carica papaya Papaya 3 3
No Yes Medicago truncatula Barrel medic 8 8
No Yes Phaseolus vulgaris v186 French bean 8 8
No Yes Glycine max v109 Soybean 16 16
No Yes Cucumis sativus v122 Cucumber 4 3
No Yes Fragaria vesca Wild strawberry 5 5
No Yes Malus domestica v196 Apple 12 12
No Yes Prunus persica v139 Peach 7 7
No Yes Linum usitatissimum v200 Flax 12 12
No Yes Manihot esculenta v147 Cassava 10 10
No Yes Populus trichocarpa v156 Black cottonwood 12 12
No Yes Vitis vinifera Wine grape 4 4
No Yes Mimulus guttatus v140 Spotted monkey flower 6 6
No Yes Solanum lycopersicum v.2.3 Tomato 5 5
No Yes Solanum tuberosum Potato 5 5
No Yes Actinidia chinensis Hongyang   8 8
No Yes Aquilegia coerulea v195   7 7
No Yes Triticum urartu 22   1 1
No Yes Triticum aestivum 22 Bread wheat 2 2
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 3 3
No Yes Oryza meridionalis 22   2 2
No Yes Oryza glumaepatula 22   2 2
No Yes Oryza glaberrima African rice 2 2
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   2 2
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 3 3
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Setaria italica v164 Foxtail millet 3 3
No Yes Zea mays subsp. mays Maize 2 2
No Yes Zea mays v181 Maize 2 2
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 3 3
No Yes Amborella trichopoda 22   4 4
No Yes Physcomitrella patens   7 7
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Ostreococcus sp. RCC809   1 1
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Bigelowiella natans CCMP2755 22   1 1
No Yes Leishmania mexicana 2.4   1 1
No Yes Leishmania major strain Friedlin   1 1
No Yes Leishmania infantum JPCM5 2.4   1 1
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Pythium iwayamai DAOM BR242034 22   2 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   2 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Phytophthora capsici   1 1
No Yes Hyaloperonospora arabidopsidis 22   1 1
No Yes Plasmodium falciparum 3D7   1 1
No Yes Plasmodium vivax SaI-1 7.0   1 1
No Yes Plasmodium knowlesi strain H   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   1 1
No Yes Plasmodium chabaudi   1 1
No Yes Plasmodium berghei ANKA   1 1
No Yes Symbiodinium minutum clade B1 v1.2   1 1
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Synechococcus sp. CC9311   1 1
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Prochlorococcus marinus str. MIT 9515   1 1
No Yes Microcoleus sp. PCC 7113   2 2
No Yes Gloeocapsa sp. PCC 7428   2 2
No Yes cyanobacterium UCYN-A   1 1
No Yes Rivularia sp. PCC 7116   3 3
No Yes Calothrix sp. PCC 7507   3 3
No Yes Anabaena variabilis ATCC 29413   2 2
No Yes 'Nostoc azollae' 0708   2 2
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7120   2 2
No Yes Nostoc sp. PCC 7524   2 2
No Yes Anabaena sp. 90   1 1
No Yes Corynebacterium aurimucosum ATCC 700975   1 1
No Yes Corynebacterium kroppenstedtii DSM 44385   1 1
No Yes Corynebacterium efficiens YS-314   1 1
No Yes Corynebacterium ulcerans 0102   1 1
No Yes Corynebacterium variabile DSM 44702   1 1
No Yes Corynebacterium pseudotuberculosis 316   1 1
No Yes Corynebacterium glutamicum R   1 1
No Yes Corynebacterium diphtheriae NCTC 13129   1 1
No Yes Streptococcus sp. I-P16   1 1
No Yes Streptococcus sp. I-G2   1 1
No Yes Streptococcus intermedius JTH08   1 1
No Yes Streptococcus pseudopneumoniae IS7493   1 1
No Yes Streptococcus mitis B6   1 1
No Yes Streptococcus parasanguinis ATCC 15912   1 1
No Yes Streptococcus pneumoniae P1031   1 1
No Yes Streptococcus sanguinis SK36   1 1
No Yes Streptococcus oralis Uo5   1 1
No Yes Streptococcus gordonii str. Challis substr. CH1   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446   1 1
No Yes Acidithiobacillus caldus SM-1   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 53993   1 1
No Yes Pseudogulbenkiania sp. NH8B   1 1
No Yes Laribacter hongkongensis HLHK9   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Collimonas fungivorans Ter331   1 1
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Achromobacter xylosoxidans   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum sp. B510   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Oceanimonas sp. GK1   2 2
No Yes Tolumonas auensis DSM 9187   1 1
No Yes Aeromonas veronii B565   2 2
No Yes Aeromonas salmonicida subsp. salmonicida A449   3 3
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   2 2
No Yes Aliivibrio salmonicida LFI1238   1 1
No Yes Vibrio fischeri MJ11   1 1
No Yes Vibrio sp. Ex25   2 2
No Yes Vibrio harveyi ATCC BAA-1116   2 2
No Yes Vibrio parahaemolyticus RIMD 2210633   2 2
No Yes Vibrio splendidus LGP32   2 2
No Yes Vibrio anguillarum 775   1 1
No Yes Vibrio furnissii NCTC 11218   2 2
No Yes Vibrio vulnificus MO6-24/O   2 2
No Yes Vibrio cholerae O395   3 3
No Yes Photobacterium profundum SS9   2 2
No Yes Psychromonas ingrahamii 37   1 1
No Yes Psychromonas sp. CNPT3   1 1
No Yes Ferrimonas balearica DSM 9799   1 1
No Yes Shewanella piezotolerans WP3   1 1
No Yes Shewanella loihica PV-4   2 2
No Yes Shewanella halifaxensis HAW-EB4   1 1
No Yes Shewanella sediminis HAW-EB3   1 1
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella pealeana ATCC 700345   1 1
No Yes Shewanella oneidensis MR-1   1 1
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella sp. MR-4   1 1
No Yes Shewanella amazonensis SB2B   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Shewanella putrefaciens CN-32   1 1
No Yes Colwellia psychrerythraea 34H   1 1
No Yes Pseudoalteromonas sp. SM9913   2 2
No Yes Pseudoalteromonas atlantica T6c   2 2
No Yes Pseudoalteromonas haloplanktis TAC125   2 2
No Yes Glaciecola sp. 4H-3-7+YE-5   2 2
No Yes Glaciecola nitratireducens FR1064   1 1
No Yes Marinobacter adhaerens HP15   1 1
No Yes Marinobacter sp. BSs20148   1 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Alteromonas sp. SN2   1 1
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Alkalilimnicola ehrlichii MLHE-1   1 1
No Yes Thioalkalivibrio sp. K90mix   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes Thiocystis violascens DSM 198   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes gamma proteobacterium HdN1   1 1
No Yes Photorhabdus asymbiotica   3 3
No Yes Photorhabdus luminescens subsp. laumondii TTO1   3 3
No Yes Xenorhabdus bovienii SS-2004   2 2
No Yes Xenorhabdus nematophila ATCC 19061   2 2
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Proteus mirabilis HI4320   1 1
No Yes Edwardsiella ictaluri 93-146   3 3
No Yes Edwardsiella tarda EIB202   4 4
No Yes Rahnella sp. Y9602   4 4
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   4 4
No Yes Yersinia pseudotuberculosis IP 31758   3 3
No Yes Yersinia pestis Pestoides F   3 3
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   4 4
No Yes Serratia sp. AS12   4 4
No Yes Serratia symbiotica str. 'Cinara cedri'   1 1
No Yes Serratia sp. ATCC 39006   2 2
No Yes Serratia plymuthica AS9   4 4
No Yes Serratia proteamaculans 568   4 4
No Yes Dickeya dadantii Ech703   2 2
No Yes Dickeya zeae Ech1591   3 3
No Yes Pectobacterium wasabiae WPP163   2 2
No Yes Pectobacterium sp. SCC3193   2 2
No Yes Pectobacterium atrosepticum SCRI1043   2 2
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   2 2
No Yes Sodalis glossinidius str. 'morsitans'   3 3
No Yes Halyomorpha halys symbiont   1 1
No Yes Pantoea sp. At-9b   4 4
No Yes Pantoea vagans C9-1   4 4
No Yes Pantoea ananatis LMG 20103   4 4
No Yes Erwinia tasmaniensis Et1/99   4 4
No Yes Erwinia sp. Ejp617   4 4
No Yes Erwinia billingiae Eb661   3 3
No Yes Erwinia pyrifoliae Ep1/96   4 4
No Yes Erwinia amylovora ATCC 49946   4 4
No Yes Escherichia blattae DSM 4481   3 3
No Yes Cronobacter turicensis z3032   3 3
No Yes Cronobacter sakazakii ES15   3 3
No Yes secondary endosymbiont of Ctenarytaina eucalypti   1 1
No Yes Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)   1 1
No Yes Enterobacteriaceae bacterium strain FGI 57   5 5
No Yes Shigella sonnei Ss046   5 5
No Yes Shigella flexneri 5 str. 8401   5 5
No Yes Shigella dysenteriae Sd197   5 5
No Yes Shigella boydii CDC 3083-94   5 5
No Yes Salmonella bongori NCTC 12419   5 5
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   4 4
No Yes Klebsiella oxytoca E718   5 5
No Yes Klebsiella variicola At-22   5 5
No Yes Klebsiella pneumoniae NTUH-K2044   5 5
No Yes Enterobacter aerogenes KCTC 2190   5 5
No Yes Escherichia fergusonii ATCC 35469   4 4
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   5 5
No Yes Enterobacter sp. R4-368   5 5
No Yes Enterobacter sp. 638   5 5
No Yes Enterobacter asburiae LF7a   5 5
No Yes Enterobacter cloacae subsp. dissolvens SDM   5 5
No Yes Citrobacter rodentium ICC168   5 5
No Yes Citrobacter koseri ATCC BAA-895   5 5
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas fulva 12-X   2 2
No Yes Pseudomonas putida F1   1 1
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas mendocina ymp   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   2 2
No Yes Pseudomonas sp. VLB120   1 1
No Yes Methanocaldococcus sp. FS406-22   1 1
No Yes Methanocaldococcus fervens AG86   1 1
No Yes Methanocaldococcus vulcanius M7   1 1
No Yes Methanocaldococcus jannaschii DSM 2661   1 1
No Yes Methanothermobacter marburgensis str. Marburg   2 2
No Yes Methanothermobacter thermautotrophicus str. Delta H   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 11 7
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 3 3
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 4 4
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Plasmodium falciparum HB3   1 1
No Yes Plasmodium falciparum Dd2   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   2 2
No Yes Chamaesiphon minutus PCC 6605   2 2
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Cyanobium gracile PCC 6307   1 1
No Yes Synechococcus sp. CC9902   1 1
No Yes Synechococcus sp. RCC307   1 1
No Yes Synechococcus sp. CC9605   1 1
No Yes Synechococcus sp. WH 8102   1 1
No Yes Synechococcus sp. WH 7803   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Prochlorococcus marinus str. NATL1A   1 1
No Yes Prochlorococcus marinus str. MIT 9301   1 1
No Yes Prochlorococcus marinus str. AS9601   1 1
No Yes Prochlorococcus marinus subsp. marinus str. CCMP1375   1 1
No Yes Prochlorococcus marinus subsp. pastoris str. CCMP1986   1 1
No Yes Prochlorococcus marinus str. MIT 9215   1 1
No Yes Prochlorococcus marinus str. MIT 9211   1 1
No Yes Prochlorococcus marinus str. MIT 9313   1 1
No Yes Prochlorococcus marinus str. MIT 9312   1 1
No Yes Prochlorococcus marinus str. MIT 9303   1 1
No Yes Prochlorococcus marinus str. NATL2A   1 1
No Yes Crinalium epipsammum PCC 9333   2 2
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7822   2 2
No Yes Cyanothece sp. PCC 7424   2 2
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   2 2
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   3 3
No Yes Corynebacterium maris DSM 45190   1 1
No Yes Corynebacterium halotolerans YIM 70093 = DSM 44683   1 1
No Yes Corynebacterium terpenotabidum Y-11   1 1
No Yes Corynebacterium ulcerans BR-AD22   1 1
No Yes Corynebacterium ulcerans 809   1 1
No Yes Corynebacterium argentoratense DSM 44202   1 1
No Yes Corynebacterium callunae DSM 20147   1 1
No Yes Corynebacterium pseudotuberculosis 258   1 1
No Yes Corynebacterium pseudotuberculosis P54B96   1 1
No Yes Corynebacterium pseudotuberculosis 267   1 1
No Yes Corynebacterium pseudotuberculosis 1/06-A   1 1
No Yes Corynebacterium pseudotuberculosis 42/02-A   1 1
No Yes Corynebacterium pseudotuberculosis 3/99-5   1 1
No Yes Corynebacterium pseudotuberculosis 31   1 1
No Yes Corynebacterium pseudotuberculosis CIP 52.97   1 1
No Yes Corynebacterium pseudotuberculosis PAT10   1 1
No Yes Corynebacterium pseudotuberculosis I19   1 1
No Yes Corynebacterium pseudotuberculosis FRC41   1 1
No Yes Corynebacterium pseudotuberculosis C231   1 1
No Yes Corynebacterium pseudotuberculosis 1002   1 1
No Yes Corynebacterium glutamicum MB001   1 1
No Yes Corynebacterium glutamicum SCgG2   1 1
No Yes Corynebacterium glutamicum SCgG1   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium diphtheriae BH8   1 1
No Yes Corynebacterium diphtheriae INCA 402   1 1
No Yes Corynebacterium diphtheriae VA01   1 1
No Yes Corynebacterium diphtheriae HC04   1 1
No Yes Corynebacterium diphtheriae HC03   1 1
No Yes Corynebacterium diphtheriae HC02   1 1
No Yes Corynebacterium diphtheriae HC01   1 1
No Yes Corynebacterium diphtheriae 241   1 1
No Yes Corynebacterium diphtheriae CDCE 8392   1 1
No Yes Corynebacterium diphtheriae PW8   1 1
No Yes Corynebacterium diphtheriae C7 (beta)   1 1
No Yes Corynebacterium diphtheriae 31A   1 1
No Yes Streptococcus constellatus subsp. pharyngis C1050   1 1
No Yes Streptococcus constellatus subsp. pharyngis C818   1 1
No Yes Streptococcus constellatus subsp. pharyngis C232   1 1
No Yes Streptococcus intermedius B196   1 1
No Yes Streptococcus intermedius C270   1 1
No Yes Streptococcus anginosus C238   1 1
No Yes Streptococcus anginosus C1051   1 1
No Yes Streptococcus oligofermentans AS 1.3089   1 1
No Yes Streptococcus parasanguinis FW213   1 1
No Yes Streptococcus pneumoniae A026   1 1
No Yes Streptococcus pneumoniae ST556   1 1
No Yes Streptococcus pneumoniae SPNA45   1 1
No Yes Streptococcus pneumoniae SPN994039   1 1
No Yes Streptococcus pneumoniae SPN994038   1 1
No Yes Streptococcus pneumoniae SPN034183   1 1
No Yes Streptococcus pneumoniae SPN034156   1 1
No Yes Streptococcus pneumoniae INV104   1 1
No Yes Streptococcus pneumoniae INV200   1 1
No Yes Streptococcus pneumoniae OXC141   1 1
No Yes Streptococcus pneumoniae gamPNI0373   1 1
No Yes Streptococcus pneumoniae AP200   1 1
No Yes Streptococcus pneumoniae ATCC 700669   1 1
No Yes Streptococcus pneumoniae TCH8431/19A   1 1
No Yes Streptococcus pneumoniae CGSP14   1 1
No Yes Streptococcus pneumoniae G54   1 1
No Yes Streptococcus pneumoniae JJA   1 1
No Yes Streptococcus pneumoniae 70585   1 1
No Yes Streptococcus pneumoniae Hungary19A-6   1 1
No Yes Streptococcus pneumoniae Taiwan19F-14   1 1
No Yes Streptococcus pneumoniae D39   1 1
No Yes Streptococcus pneumoniae 670-6B   1 1
No Yes Streptococcus pneumoniae R6   1 1
No Yes Streptococcus pneumoniae TIGR4   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1   1 1
No Yes Acidithiobacillus ferrooxidans ATCC 23270   1 1
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Aeromonas hydrophila ML09-119   3 3
No Yes Vibrio fischeri ES114   1 1
No Yes Vibrio sp. EJY3   2 2
No Yes Vibrio parahaemolyticus BB22OP   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   2 2
No Yes Vibrio anguillarum Listonella anguillarum M3   1 1
No Yes Vibrio nigripulchritudo VibrioScope   2 2
No Yes Vibrio vulnificus CMCP6   2 2
No Yes Vibrio vulnificus YJ016   2 2
No Yes Vibrio cholerae LMA3984-4   2 2
No Yes Vibrio cholerae M66-2   2 2
No Yes Vibrio cholerae O395   3 3
No Yes Vibrio cholerae IEC224   2 2
No Yes Vibrio cholerae O1 str. 2010EL-1786   2 2
No Yes Vibrio cholerae MJ-1236   2 2
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   2 2
No Yes Shewanella sp. W3-18-1   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella baltica OS195   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Shewanella sp. MR-7   1 1
No Yes Shewanella putrefaciens 200   1 1
No Yes Glaciecola psychrophila 170   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   1 1
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   1 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   1 1
No Yes Alteromonas macleodii ATCC 27126   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas oryzae pv. oryzicola BLS256   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Spiribacter salinus M19-40   1 1
No Yes Thioalkalivibrio nitratireducens DSM 14787   1 1
No Yes Thioflavicoccus mobilis 8321   1 1
No Yes Proteus mirabilis BB2000   1 1
No Yes Morganella morganii subsp. morganii KT   2 2
No Yes Edwardsiella tarda C07-087   4 4
No Yes Edwardsiella tarda FL6-60   4 4
No Yes Rahnella aquatilis HX2   4 4
No Yes Yersinia pseudotuberculosis PB1/+   3 3
No Yes Yersinia pseudotuberculosis YPIII   3 3
No Yes Yersinia pseudotuberculosis IP 32953   3 3
No Yes Yersinia pestis biovar Microtus str. 91001   3 3
No Yes Yersinia pestis A1122   3 3
No Yes Yersinia pestis Z176003   2 2
No Yes Yersinia pestis D182038   2 2
No Yes Yersinia pestis D106004   2 2
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   3 3
No Yes Yersinia pestis Nepal516   3 3
No Yes Yersinia pestis Antiqua   3 3
No Yes Yersinia pestis Angola   3 3
No Yes Yersinia pestis CO92   3 3
No Yes Yersinia pestis KIM10+   3 3
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   4 4
No Yes Yersinia enterocolitica subsp. palearctica Y11   4 4
No Yes Serratia sp. AS13   4 4
No Yes Serratia plymuthica S13   4 4
No Yes Serratia plymuthica 4Rx13   4 4
No Yes Serratia marcescens FGI94   4 4
No Yes Serratia marcescens WW4   4 4
No Yes Serratia liquefaciens ATCC 27592   4 4
No Yes Dickeya dadantii Ech586   2 2
No Yes Dickeya dadantii 3937   2 2
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   2 2
No Yes Pantoea ananatis LMG 5342   4 4
No Yes Pantoea ananatis PA13   4 4
No Yes Pantoea ananatis AJ13355   4 4
No Yes Erwinia pyrifoliae DSM 12163   4 4
No Yes Erwinia amylovora CFBP1430   4 4
No Yes Cronobacter sakazakii CMCC 45402   4 4
No Yes Cronobacter sakazakii SP291   3 3
No Yes Cronobacter sakazakii ATCC BAA-894   3 3
No Yes Raoultella ornithinolytica B6   5 5
No Yes Shigella sonnei 53G   5 5
No Yes Shigella flexneri 2002017   5 5
No Yes Shigella flexneri 2a str. 2457T   5 5
No Yes Shigella flexneri 2a str. 301   5 5
No Yes Shigella dysenteriae 1617   5 5
No Yes Shigella boydii Sb227   5 5
No Yes Salmonella bongori N268-08   5 5
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   5 5
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   5 5
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   5 5
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   5 5
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   5 5
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   5 5
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   5 5
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   4 4
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   5 5
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   4 4
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   5 5
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   5 5
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   5 5
No Yes Salmonella enterica serovar Bovismorbificans genomics   5 5
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   5 5
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   5 5
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   5 5
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   5 5
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   5 5
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   5 5
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   5 5
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   5 5
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   5 5
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   5 5
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   5 5
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   5 5
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   5 5
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   5 5
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   5 5
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   5 5
No Yes Klebsiella oxytoca KCTC 1686   5 5
No Yes Klebsiella pneumoniae JM45   3 3
No Yes Klebsiella pneumoniae CG43   5 5
No Yes Klebsiella pneumoniae KCTC 2242   5 5
No Yes Klebsiella pneumoniae 342   5 5
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   5 5
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   5 5
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   4 4
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   5 5
No Yes Enterobacter aerogenes EA1509E   5 5
No Yes Escherichia coli E24377A   4 4
No Yes Escherichia coli E. coli PMV-1   5 5
No Yes Escherichia coli JJ1886   5 5
No Yes Escherichia coli LY180   5 5
No Yes Escherichia coli APEC O78   5 5
No Yes Escherichia coli O7:K1 str. CE10   5 5
No Yes Escherichia coli O104:H4 str. 2009EL-2050   5 5
No Yes Escherichia coli O104:H4 str. 2009EL-2071   5 5
No Yes Escherichia coli O104:H4 str. 2011C-3493   5 5
No Yes Escherichia coli NA114   5 5
No Yes Escherichia coli P12b   5 5
No Yes Escherichia coli str. 'clone D i2'   5 5
No Yes Escherichia coli str. 'clone D i14'   5 5
No Yes Escherichia coli UM146   5 5
No Yes Escherichia coli 042   5 5
No Yes Escherichia coli Xuzhou21   5 5
No Yes Escherichia coli IHE3034   5 5
No Yes Escherichia coli UMNK88   5 5
No Yes Escherichia coli O83:H1 str. NRG 857C   5 5
No Yes Escherichia coli ABU 83972   5 5
No Yes Escherichia coli KO11FL   5 5
No Yes Escherichia coli KO11FL   5 5
No Yes Escherichia coli LF82   5 5
No Yes Escherichia coli ED1a   5 5
No Yes Escherichia coli IAI39   5 5
No Yes Escherichia coli UMN026   5 5
No Yes Escherichia coli 55989   5 5
No Yes Escherichia coli S88   5 5
No Yes Escherichia coli IAI1   5 5
No Yes Escherichia coli W   5 5
No Yes Escherichia coli W   5 5
No Yes Escherichia coli DH1   5 5
No Yes Escherichia coli DH1   5 5
No Yes Escherichia coli ATCC 8739   5 5
No Yes Escherichia coli BL21(DE3)   5 5
No Yes Escherichia coli BL21(DE3)   5 5
No Yes Escherichia coli SMS-3-5   5 5
No Yes Escherichia coli SE15   5 5
No Yes Escherichia coli SE11   5 5
No Yes Escherichia coli APEC O1   2 2
No Yes Escherichia coli O103:H2 str. 12009   5 5
No Yes Escherichia coli UTI89   5 5
No Yes Escherichia coli 536   5 5
No Yes Escherichia coli HS   5 5
No Yes Escherichia coli ETEC H10407   5 5
No Yes Escherichia coli O55:H7 str. RM12579   5 5
No Yes Escherichia coli O55:H7 str. CB9615   5 5
No Yes Escherichia coli O26:H11 str. 11368   5 5
No Yes Escherichia coli CFT073   5 5
No Yes Escherichia coli O111:H- str. 11128   5 5
No Yes Escherichia coli O127:H6 str. E2348/69   5 5
No Yes Escherichia coli O157:H7 str. TW14359   5 5
No Yes Escherichia coli O157:H7 str. EC4115   5 5
No Yes Escherichia coli O157:H7 str. Sakai   5 5
No Yes Escherichia coli O157:H7 str. EDL933   5 5
No Yes Escherichia coli str. K-12 substr. MDS42   5 5
No Yes Escherichia coli BW2952   5 5
No Yes Escherichia coli str. K-12 substr. MG1655   5 5
No Yes Escherichia coli str. K-12 substr. W3110   5 5
No Yes Escherichia coli str. K-12 substr. DH10B   5 5
No Yes Escherichia coli B str. REL606   5 5
No Yes Enterobacter cloacae SCF1   5 5
No Yes Enterobacter cloacae EcWSU1   5 5
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   5 5
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   3 3
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   5 5
No Yes Pseudomonas denitrificans ATCC 13867   2 2
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   1 1
No Yes Pseudomonas monteilii SB3101   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida H8234   1 1
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida DOT-T1E   1 1
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   1 1
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Pseudomonas mendocina NK-01   1 1
No Yes Pseudomonas aeruginosa SCV20265   2 2
No Yes Pseudomonas aeruginosa MTB-1   2 2
No Yes Pseudomonas aeruginosa LES431   2 2
No Yes Pseudomonas aeruginosa RP73   2 2
No Yes Pseudomonas aeruginosa B136-33   2 2
No Yes Pseudomonas aeruginosa PA1R   2 2
No Yes Pseudomonas aeruginosa PA1   2 2
No Yes Pseudomonas aeruginosa DK2   2 2
No Yes Pseudomonas aeruginosa NCGM2.S1   2 2
No Yes Pseudomonas aeruginosa M18   2 2
No Yes Pseudomonas aeruginosa LESB58   2 2
No Yes Pseudomonas aeruginosa PA7   2 2
No Yes Pseudomonas aeruginosa PAO1   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 20 17
No Yes Homo sapiens (NCBI version) Human 10 8
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 7 6
No Yes Heliconius numata (Incomplete)   2 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 3 3
No Yes Lotus japonicus (Early assembly)   3 3
No Yes Malus x domestica (Duplicate) Apple 12 12
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   10 10
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 5 5
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 5 5
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   2 2
No Yes Homo sapiens 69_37 Human 6 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 6 5
No Yes Gorilla gorilla 69_3.1 Western gorilla 9 8
No Yes Pongo abelii 69_2 Sumatran orangutan 10 9
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 3 3
No Yes Macaca mulatta 69_1 Rhesus monkey 13 12
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 12 10
No Yes Otolemur garnettii 69_3 Small-eared galago 7 6
No Yes Microcebus murinus 69_1 Gray mouse lemur 6 5
No Yes Rattus norvegicus 69_3.4 Norway rat 8 7
No Yes Mus musculus 69_38 House mouse 7 6
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 4 4
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 8 7
No Yes Cavia porcellus 69_3 Domestic guinea pig 9 9
No Yes Oryctolagus cuniculus 69_2 Rabbit 10 9
No Yes Ochotona princeps 69 American pika 5 5
No Yes Tupaia belangeri 69 Northern tree shrew 4 4
No Yes Sus scrofa 69_10.2 Pig 10 9
No Yes Bos taurus 69_3.1 Cattle 12 11
No Yes Vicugna pacos 69_1 Alpaca 4 4
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 5 5
No Yes Mustela putorius furo 69_1.0 Domestic ferret 7 6
No Yes Ailuropoda melanoleuca 69_1 Giant panda 8 7
No Yes Canis familiaris 69_3.1 Dog 7 6
No Yes Felis catus 69 Domestic cat 4 3
No Yes Equus caballus 69_2 Horse 7 6
No Yes Myotis lucifugus 69_2.0 Little brown bat 9 7
No Yes Pteropus vampyrus 69_1 Large flying fox 6 5
No Yes Sorex araneus 69_1 European shrew 4 4
No Yes Erinaceus europaeus 69 Western European hedgehog 1 1
No Yes Procavia capensis 69_1 Cape rock hyrax 5 5
No Yes Loxodonta africana 69_3 African savanna elephant 9 8
No Yes Echinops telfairi 69 Small Madagascar hedgehog 5 5
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 4 3
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 6 6
No Yes Macropus eugenii 69_1.0 Tammar wallaby 6 5
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 7 6
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 6 5
No Yes Ornithorhynchus anatinus 69_5 Platypus 3 3
No Yes Petromyzon marinus 69_7.0 Sea lamprey 3 2
No Yes Meleagris gallopavo 69_2 Turkey 6 5
No Yes Gallus gallus 69_2 Chicken 6 5
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 8 6
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 5 4
No Yes Anolis carolinensis 69_2.0 Green anole 7 6
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 3 2
No Yes Latimeria chalumnae 69_1 Coelacanth 4 4
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 4 3
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 2 2
No Yes Oryzias latipes 69_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 4 3
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 4 3
No Yes Danio rerio 69_9 Zebrafish 3 2
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes Arabidopsis thaliana 10 Thale cress 7 7
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   3 3
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   23 23
No Yes Combined (meta-genome)   17 17
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   27 27
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   7 7
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   7 7
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   22 22
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   36 36
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   43 43
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   7 7
No Yes NCBI 2017_08 genome   128484 128251
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   29 29
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   765 743
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   9029 8862
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   56 56
No Yes NCBI viral sequences (Viral)   19 19
No Yes PDB chains (SCOP 1.75) (PDB)   59 59
No Yes Protein Data Bank (all PDB sequenc)   145 145
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   853 853
No Yes TargetDB (Targets)   26 26
No Yes The Salmonella enterica Pan-genome (meta-genome)   154 154
No Yes UniProt viral sequences (Viral)   10 10

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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