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Penicillin acylase, catalytic domain family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   43095 43095
No Yes Paramecium tetraurelia   2 2
No Yes Tetrahymena thermophila SB210 1   6 6
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Naegleria gruberi   3 3
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Gloeocapsa sp. PCC 7428   2 2
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Conexibacter woesei DSM 14684   2 2
No Yes Rubrobacter xylanophilus DSM 9941   1 1
No Yes Ilumatobacter coccineus   1 1
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Catenulispora acidiphila DSM 44928   3 3
No Yes Thermobifida fusca YX   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Streptosporangium roseum DSM 43021   5 5
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   2 2
No Yes Streptomyces sp. PAMC26508   2 2
No Yes Streptomyces flavogriseus ATCC 33331   2 2
No Yes Streptomyces sp. SirexAA-E   2 2
No Yes Streptomyces griseus subsp. griseus NBRC 13350   2 2
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces violaceusniger Tu 4113   2 2
No Yes Streptomyces avermitilis MA-4680   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces scabiei 87.22   3 3
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   2 2
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Saccharomonospora viridis DSM 43017   2 2
No Yes Pseudonocardia dioxanivorans CB1190   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Amycolatopsis mediterranei U32   2 2
No Yes Kribbella flavida DSM 17836   2 2
No Yes Nocardioides sp. JS614   2 2
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Salinispora arenicola CNS-205   2 2
No Yes Salinispora tropica CNB-440   2 2
No Yes Verrucosispora maris AB-18-032   1 1
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Actinoplanes missouriensis 431   1 1
No Yes Sanguibacter keddieii DSM 10542   1 1
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Isoptericola variabilis 225   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Cellulomonas flavigena DSM 20109   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   2 2
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Herpetosiphon aurantiacus DSM 785   2 2
No Yes Roseiflexus sp. RS-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   2 2
No Yes Chloroflexus sp. MS-G   2 2
No Yes Chloroflexus sp. Y-400-fl   2 2
No Yes Chloroflexus aggregans DSM 9485   2 2
No Yes Chloroflexus aurantiacus J-10-fl   2 2
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Deinococcus radiodurans R1   1 1
No Yes Oceanithermus profundus DSM 14977   1 1
No Yes Marinithermus hydrothermalis DSM 14884   1 1
No Yes Meiothermus silvanus DSM 9946   2 2
No Yes Meiothermus ruber DSM 1279   2 2
No Yes Thermus sp. CCB_US3_UF1   1 1
No Yes Thermus scotoductus SA-01   1 1
No Yes Thermus thermophilus HB27   1 1
No Yes Symbiobacterium thermophilum IAM 14863   1 1
No Yes Paenibacillus mucilaginosus 3016   1 1
No Yes Solibacillus silvestris StLB046   1 1
No Yes Lysinibacillus sphaericus C3-41   1 1
No Yes Oceanobacillus iheyensis HTE831   2 2
No Yes Halobacillus halophilus DSM 2266   1 1
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus pseudofirmus OF4   1 1
No Yes Gemmatimonas aurantiaca T-27   3 3
No Yes Melioribacter roseus P3M   1 1
No Yes Ignavibacterium album JCM 16511   1 1
No Yes Chloroherpeton thalassium ATCC 35110   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   3 3
No Yes Saprospira grandis str. Lewin   2 2
No Yes Niastella koreensis GR20-10   3 3
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Salinibacter ruber M8   1 1
No Yes Candidatus Amoebophilus asiaticus 5a2   1 1
No Yes Belliella baltica DSM 15883   3 3
No Yes Cyclobacterium marinum DSM 745   2 2
No Yes Marivirga tractuosa DSM 4126   2 2
No Yes Fibrella aestuarina   2 2
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Spirosoma linguale DSM 74   3 3
No Yes Runella slithyformis DSM 19594   6 6
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Maribacter sp. HTCC2170   2 2
No Yes Robiginitalea biformata HTCC2501   4 4
No Yes Zobellia galactanivorans   2 2
No Yes Muricauda ruestringensis DSM 13258   2 2
No Yes Cellulophaga algicola DSM 14237   2 2
No Yes Cellulophaga lytica DSM 7489   2 2
No Yes Polaribacter sp. MED152   1 1
No Yes Flavobacterium psychrophilum JIP02/86   1 1
No Yes Flavobacterium branchiophilum FL-15   1 1
No Yes Flavobacterium columnare ATCC 49512   1 1
No Yes Flavobacterium johnsoniae UW101   1 1
No Yes Turneriella parva DSM 21527   3 3
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550   1 1
No Yes Leptospira interrogans serovar Lai str. IPAV   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   4 4
No Yes Granulicella tundricola MP5ACTX9   2 2
No Yes Granulicella mallensis MP5ACTX8   2 2
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   4 4
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Bacteriovorax marinus SJ   2 2
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Desulfatibacillum alkenivorans AK-01   3 3
No Yes Desulfobacterium autotrophicum HRM2   2 2
No Yes Desulfococcus oleovorans Hxd3   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Sorangium cellulosum 'So ce 56'   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes Stigmatella aurantiaca DW4/3-1   2 2
No Yes Corallococcus coralloides DSM 2259   4 4
No Yes Myxococcus xanthus DK 1622   1 1
No Yes beta proteobacterium CB   1 1
No Yes Methylibium petroleiphilum PM1   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis LMG 19424   2 2
No Yes Cupriavidus metallidurans CH34   3 3
No Yes Cupriavidus necator N-1   2 2
No Yes Ralstonia eutropha H16   2 2
No Yes Ralstonia pickettii 12D   2 2
No Yes Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   2 2
No Yes Burkholderia mallei SAVP1   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Burkholderia glumae BGR1   2 2
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   1 1
No Yes Variovorax paradoxus S110   2 2
No Yes Rhodoferax ferrireducens T118   1 1
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   2 2
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   2 2
No Yes Comamonas testosteroni CNB-2   1 1
No Yes Collimonas fungivorans Ter331   1 1
No Yes Advenella kashmirensis WT001   1 1
No Yes Bordetella petrii DSM 12804   1 1
No Yes Achromobacter xylosoxidans A8   2 2
No Yes Achromobacter xylosoxidans   1 1
No Yes Nitrosomonas eutropha C91   1 1
No Yes Nitrosomonas europaea ATCC 19718   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter crescentus NA1000   2 2
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Sphingomonas sp. MM-1   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Maricaulis maris MCS10   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Jannaschia sp. CCS1   1 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Roseobacter litoralis Och 149   1 1
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Paracoccus denitrificans PD1222   2 2
No Yes Tistrella mobilis KA081020-065   2 2
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Rhodospirillum centenum SW   1 1
No Yes Rhodospirillum rubrum F11   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum sp. B510   1 1
No Yes Azospirillum brasilense Sp245   1 1
No Yes Granulibacter bethesdensis CGDNIH1   1 1
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella abortus S19   1 1
No Yes Teredinibacter turnerae T7901   1 1
No Yes Cellvibrio japonicus Ueda107   1 1
No Yes Ferrimonas balearica DSM 9799   1 1
No Yes Shewanella piezotolerans WP3   1 1
No Yes Shewanella oneidensis MR-1   1 1
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella sp. MR-4   1 1
No Yes Shewanella amazonensis SB2B   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Shewanella putrefaciens CN-32   1 1
No Yes Colwellia psychrerythraea 34H   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Glaciecola nitratireducens FR1064   2 2
No Yes Marinobacter adhaerens HP15   1 1
No Yes Alteromonas sp. SN2   1 1
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Methylomicrobium alcaliphilum   2 2
No Yes Methylomonas methanica MC09   2 2
No Yes Rhodanobacter denitrificans   1 1
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Thiocystis violascens DSM 198   1 1
No Yes Coxiella burnetii Dugway 5J108-111   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Xenorhabdus nematophila ATCC 19061   1 1
No Yes Providencia stuartii MRSN 2154   2 2
No Yes Serratia sp. ATCC 39006   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Dickeya dadantii Ech703   2 2
No Yes Shigella sonnei Ss046   2 2
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Azotobacter vinelandii DJ   2 2
No Yes Pseudomonas sp. TKP   3 3
No Yes Pseudomonas sp. UW4   3 3
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   3 3
No Yes Pseudomonas entomophila L48   3 3
No Yes Pseudomonas syringae pv. tomato str. DC3000   3 3
No Yes Pseudomonas stutzeri A1501   1 1
No Yes Pseudomonas fulva 12-X   2 2
No Yes Pseudomonas putida F1   3 3
No Yes Pseudomonas protegens Pf-5   3 3
No Yes Pseudomonas fluorescens SBW25   3 3
No Yes Pseudomonas mendocina ymp   2 2
No Yes Pseudomonas aeruginosa UCBPP-PA14   4 4
No Yes Pseudomonas sp. VLB120   3 3
No Yes Acinetobacter oleivorans DR1   1 1
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Acinetobacter baumannii ATCC 17978   1 1
No Yes Metallosphaera sedula DSM 5348   1 1
No Yes Sulfolobus acidocaldarius DSM 639   1 1
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes Pyrobaculum sp. 1860   1 1
No Yes Pyrobaculum calidifontis JCM 11548   1 1
No Yes Pyrobaculum arsenaticum DSM 13514   1 1
No Yes Pyrobaculum oguniense TE7   2 2
No Yes Pyrobaculum aerophilum str. IM2   1 1
No Yes Archaeoglobus fulgidus DSM 4304   1 1
No Yes Thermoplasma volcanium GSS1   1 1
No Yes Thermoplasma acidophilum DSM 1728   2 2
No Yes Picrophilus torridus DSM 9790   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   1 1
No Yes Natrialba magadii ATCC 43099   1 1
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Haloarcula hispanica ATCC 33960   1 1
No Yes Haloarcula marismortui ATCC 43049   2 2
No Yes Halalkalicoccus jeotgali B3   3 3
No Yes Chroococcidiopsis thermalis PCC 7203   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   2 2
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7424   2 2
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   2 2
No Yes Streptomyces albus J1074   2 2
No Yes Streptomyces rapamycinicus NRRL 5491   3 3
No Yes Streptomyces davawensis JCM 4913   2 2
No Yes Streptomyces fulvissimus DSM 40593   3 3
No Yes Streptomyces venezuelae ATCC 10712   3 3
No Yes Streptomyces collinus Tu 365   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   2 2
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis mediterranei RB   2 2
No Yes Amycolatopsis mediterranei S699   2 2
No Yes Amycolatopsis mediterranei S699   2 2
No Yes Amycolatopsis orientalis HCCB10007   2 2
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Deinococcus peraridilitoris DSM 19664   2 2
No Yes Thermus oshimai JL-2   1 1
No Yes Thermus thermophilus JL-18   1 1
No Yes Thermus thermophilus SG0.5JP17-16   1 1
No Yes Thermus thermophilus HB8   1 1
No Yes Paenibacillus mucilaginosus KNP414   1 1
No Yes Paenibacillus mucilaginosus K02   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   2 2
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Salinibacter ruber DSM 13855   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Emticicia oligotrophica DSM 17448   5 5
No Yes Nonlabens dokdonensis DSW-6   1 1
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197   1 1
No Yes Leptospira interrogans serovar Lai str. 56601   1 1
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Sorangium cellulosum So0157-2   5 5
No Yes Anaeromyxobacter sp. K   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-C   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Pandoraea pnomenusa 3kgm   2 2
No Yes Ralstonia pickettii 12J   2 2
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Polynucleobacter necessarius subsp. necessarius STIR1   1 1
No Yes Burkholderia sp. YI23   2 2
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   2 2
No Yes Burkholderia pseudomallei NCTC 13179   2 2
No Yes Burkholderia pseudomallei BPC006   2 2
No Yes Burkholderia pseudomallei 1026b   2 2
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   3 3
No Yes Burkholderia pseudomallei 1710b   2 2
No Yes Burkholderia pseudomallei K96243   2 2
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR   1 1
No Yes Variovorax paradoxus B4   2 2
No Yes Variovorax paradoxus EPS   4 4
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Caulobacter crescentus CB15   2 2
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Octadecabacter antarcticus 307   1 1
No Yes Octadecabacter arcticus 238   1 1
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Paracoccus aminophilus JCM 7686   1 1
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   1 1
No Yes Rhodospirillum rubrum ATCC 11170   1 1
No Yes Gluconobacter oxydans H24   1 1
No Yes Brucella ceti TE10759-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   1 1
No Yes Brucella melitensis M5-90   1 1
No Yes Brucella melitensis M28   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Brucella abortus A13334   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   2 2
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   2 2
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Shewanella sp. W3-18-1   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Shewanella sp. MR-7   1 1
No Yes Shewanella putrefaciens 200   1 1
No Yes Glaciecola psychrophila 170   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   2 2
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   1 1
No Yes Alteromonas macleodii AltDE1   2 2
No Yes Alteromonas macleodii str. 'English Channel 673'   1 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   1 1
No Yes Alteromonas macleodii ATCC 27126   1 1
No Yes Alcanivorax dieselolei B5   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Dickeya dadantii Ech586   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Shigella boydii Sb227   2 2
No Yes Escherichia coli LY180   1 1
No Yes Escherichia coli APEC O78   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli IAI1   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli O103:H2 str. 12009   1 1
No Yes Enterobacter cloacae SCF1   1 1
No Yes Azotobacter vinelandii CA6   2 2
No Yes Azotobacter vinelandii CA   2 2
No Yes Pseudomonas denitrificans ATCC 13867   2 2
No Yes Pseudomonas syringae pv. phaseolicola 1448A   3 3
No Yes Pseudomonas syringae pv. syringae B728a   3 3
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   1 1
No Yes Pseudomonas monteilii SB3101   3 3
No Yes Pseudomonas monteilii SB3078   3 3
No Yes Pseudomonas putida H8234   3 3
No Yes Pseudomonas putida HB3267   3 3
No Yes Pseudomonas putida NBRC 14164   3 3
No Yes Pseudomonas putida DOT-T1E   3 3
No Yes Pseudomonas putida S16   3 3
No Yes Pseudomonas putida BIRD-1   3 3
No Yes Pseudomonas putida W619   3 3
No Yes Pseudomonas putida ND6   3 3
No Yes Pseudomonas putida KT2440   3 3
No Yes Pseudomonas putida GB-1   3 3
No Yes Pseudomonas protegens CHA0   3 3
No Yes Pseudomonas poae RE*1-1-14   3 3
No Yes Pseudomonas fluorescens F113   3 3
No Yes Pseudomonas fluorescens A506   3 3
No Yes Pseudomonas fluorescens R124   3 3
No Yes Pseudomonas fluorescens Pf0-1   3 3
No Yes Pseudomonas resinovorans NBRC 106553   3 3
No Yes Pseudomonas mendocina NK-01   2 2
No Yes Pseudomonas aeruginosa SCV20265   4 4
No Yes Pseudomonas aeruginosa MTB-1   4 4
No Yes Pseudomonas aeruginosa LES431   4 4
No Yes Pseudomonas aeruginosa RP73   4 4
No Yes Pseudomonas aeruginosa B136-33   4 4
No Yes Pseudomonas aeruginosa PA1R   4 4
No Yes Pseudomonas aeruginosa PA1   4 4
No Yes Pseudomonas aeruginosa DK2   4 4
No Yes Pseudomonas aeruginosa NCGM2.S1   4 4
No Yes Pseudomonas aeruginosa M18   4 4
No Yes Pseudomonas aeruginosa LESB58   4 4
No Yes Pseudomonas aeruginosa PA7   4 4
No Yes Pseudomonas aeruginosa PAO1   4 4
No Yes Acinetobacter baumannii ZW85-1   1 1
No Yes Acinetobacter baumannii TYTH-1   1 1
No Yes Acinetobacter baumannii BJAB0868   1 1
No Yes Acinetobacter baumannii BJAB0715   1 1
No Yes Acinetobacter baumannii BJAB07104   1 1
No Yes Acinetobacter baumannii TCDC-AB0715   1 1
No Yes Acinetobacter baumannii D1279779   1 1
No Yes Acinetobacter baumannii MDR-TJ   1 1
No Yes Acinetobacter baumannii 1656-2   1 1
No Yes Acinetobacter baumannii ATCC 19606   1 1
No Yes Acinetobacter baumannii AB307-0294   1 1
No Yes Acinetobacter baumannii AYE   1 1
No Yes Acinetobacter baumannii MDR-ZJ06   1 1
No Yes Acinetobacter baumannii AB0057   1 1
No Yes Acinetobacter baumannii ACICU   1 1
No Yes Aeropyrum camini SY1 = JCM 12091   1 1
No Yes Sulfolobus acidocaldarius SUSAZ   1 1
No Yes Sulfolobus acidocaldarius Ron12/I   1 1
No Yes Sulfolobus acidocaldarius N8   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Ferroplasma acidarmanus fer1   1 1
No Yes Halovivax ruber XH-70   1 1
No Yes Natronococcus occultus SP4   1 1
No Yes Haloarcula hispanica N601   1 1
No Yes 1_050719N (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   3 3
No Yes 3_050719R (meta-genome)   8 8
No Yes 4_050719Q (meta-genome)   5 5
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   11 11
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   2 2
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 3
No Yes Bath Hot Springs, filamentous community (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Combined (meta-genome)   3 3
No Yes Crater Hills (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   4 4
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   4 4
No Yes Dump bottom (Dump bottom) (meta-genome)   3 3
No Yes Dump top (Dump top) (meta-genome)   10 10
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   3 3
No Yes Fungus garden combined (combined) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   4 4
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   9 9
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   3 3
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   6 6
No Yes NCBI 2017_08 genome   30469 30469
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   6 6
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   2 2
No Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   4 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   3 3
No Yes Sludge/US, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   10 10
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   309 309
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   5 5
No Yes Uniprot 2018_03 genome   9763 9763
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   2 2
No Yes Global Ocean Sampling Expedition (GOS)   405 405
No Yes NCBI plasmid sequences (Plasmids)   21 21
No Yes PDB chains (SCOP 1.75) (PDB)   25 25
No Yes Protein Data Bank (all PDB sequenc)   146 146
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   443 385
No Yes TargetDB (Targets)   23 23

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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