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Major capsid protein gp5 family domain assignments


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View all assignments containing a Major capsid protein gp5 domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   7493 7493
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Nocardia farcinica IFM 10152   2 2
No Yes Corynebacterium diphtheriae NCTC 13129   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Delftia acidovorans SPH-1   1 1
No Yes Collimonas fungivorans Ter331   1 1
No Yes Bordetella bronchiseptica RB50   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   2 2
No Yes Paracoccus denitrificans PD1222   2 2
No Yes Acetobacter pasteurianus IFO 3283-01   1 1
No Yes Polymorphum gilvum SL003B-26A1   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Aggregatibacter aphrophilus NJ8700   1 1
No Yes Shewanella oneidensis MR-1   1 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Xenorhabdus bovienii SS-2004   1 1
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Proteus mirabilis HI4320   1 1
No Yes Rahnella sp. Y9602   1 1
No Yes Sodalis glossinidius str. 'morsitans'   1 1
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Escherichia blattae DSM 4481   1 1
No Yes Cronobacter turicensis z3032   1 1
No Yes Cronobacter sakazakii ES15   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Pseudomonas sp. VLB120   2 2
No Yes Psychrobacter arcticus 273-4   1 1
No Yes Acinetobacter baumannii ATCC 17978   1 1
No Yes Corynebacterium argentoratense DSM 44202   1 1
No Yes Corynebacterium diphtheriae CDCE 8392   1 1
No Yes Corynebacterium diphtheriae PW8   2 2
No Yes Corynebacterium diphtheriae C7 (beta)   1 1
No Yes Dehalococcoides mccartyi BTF08   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Acetobacter pasteurianus IFO 3283-12   1 1
No Yes Acetobacter pasteurianus IFO 3283-01-42C   1 1
No Yes Acetobacter pasteurianus IFO 3283-32   1 1
No Yes Acetobacter pasteurianus IFO 3283-26   1 1
No Yes Acetobacter pasteurianus IFO 3283-22   1 1
No Yes Acetobacter pasteurianus IFO 3283-07   1 1
No Yes Acetobacter pasteurianus IFO 3283-03   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Shewanella sp. W3-18-1   1 1
No Yes Shewanella baltica OS223   1 1
No Yes Proteus mirabilis BB2000   1 1
No Yes Edwardsiella tarda C07-087   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Cronobacter sakazakii SP291   1 1
No Yes Cronobacter sakazakii ATCC BAA-894   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   1 1
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida H8234   2 2
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida W619   2 2
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Acinetobacter baumannii TYTH-1   2 2
No Yes Acinetobacter baumannii BJAB0868   1 1
No Yes Acinetobacter baumannii BJAB07104   1 1
No Yes Acinetobacter baumannii MDR-TJ   1 1
No Yes Acinetobacter johnsonii SH046   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   4 4
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   10 10
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dump bottom (Dump bottom) (meta-genome)   7 7
No Yes Dump top (Dump top) (meta-genome)   9 9
No Yes Fungus garden combined (combined) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   6 6
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   3 3
No Yes NCBI 2017_08 genome   5542 5542
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   34 34
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   4 4
No Yes Uniprot 2018_03 genome   1328 1328
No Yes Global Ocean Sampling Expedition (GOS)   17 17
No Yes NCBI plasmid sequences (Plasmids)   2 2
No Yes NCBI viral sequences (Viral)   54 54
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   84 84
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   181 181
No Yes TargetDB (Targets)   4 4
No Yes The Salmonella enterica Pan-genome (meta-genome)   2 2
No Yes UniProt viral sequences (Viral)   15 15

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