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BadF/BadG/BcrA/BcrD-like family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   32595 32595
No Yes Homo sapiens 76_38 Human 17 12
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 2 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 4 2
No Yes Pongo abelii 76_2 Sumatran orangutan 2 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 2 1
No Yes Papio anubis 76 Olive baboon 2 1
No Yes Macaca mulatta 76_1 Rhesus monkey 2 1
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 2 1
No Yes Otolemur garnettii 76_3 Small-eared galago 2 1
No Yes Microcebus murinus 76_1 Gray mouse lemur 2 1
No Yes Rattus norvegicus 76_5.0 Norway rat 2 1
No Yes Mus musculus 76_38 House mouse 6 3
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 2 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 2 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 2 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 2 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 4 2
No Yes Ochotona princeps 76 American pika 1 1
No Yes Tupaia belangeri 76 Northern tree shrew 3 2
No Yes Sus scrofa 76_10.2 Pig 2 1
No Yes Bos taurus 76_3.1 Cattle 2 1
No Yes Ovis aries 76_3.1 Sheep 2 1
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 2 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 2 1
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 2 1
No Yes Equus caballus 76_2 Horse 2 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 2 1
No Yes Pteropus vampyrus 76_1 Large flying fox 2 1
No Yes Erinaceus europaeus 76 Western European hedgehog 2 1
No Yes Procavia capensis 76_1 Cape rock hyrax 2 1
No Yes Loxodonta africana 76_3 African savanna elephant 2 1
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 2 1
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 2 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 4 2
No Yes Ornithorhynchus anatinus 76_5 Platypus 1 1
No Yes Saccoglossus kowalevskii v3.0   2 1
No Yes Petromyzon marinus 76_7.0 Sea lamprey 2 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 2 1
No Yes Anolis carolinensis 76_2.0 Green anole 2 1
No Yes Xenopus laevis African clawed frog 4 2
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 2 1
No Yes Latimeria chalumnae 76_1 Coelacanth 2 1
No Yes Lepisosteus oculatus 76 Spotted gar 1 1
No Yes Gadus morhua 76_1 Atlantic cod 2 1
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 2 1
No Yes Takifugu rubripes 76_4 Torafugu 3 2
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 2 1
No Yes Oryzias latipes 76_1 Japanese medaka 2 1
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 1
No Yes Poecilia formosa 76 Amazon molly 2 1
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 2 1
No Yes Astyanax mexicanus 76 Mexican tetra 3 2
No Yes Danio rerio 76_9 Zebrafish 2 1
No Yes Oikopleura dioica   2 2
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 1 1
No Yes Adineta vaga   2 2
No Yes Octopus bimaculoides 280   1 1
No Yes Crassostrea gigas 22 Pacific oyster 2 1
No Yes Lottia gigantea Owl limpet 1 1
No Yes Helobdella robusta   1 1
No Yes Capitella sp. I   1 1
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   1 1
No Yes Drosophila yakuba 1.3   1 1
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 1 1
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 2 2
No Yes Anopheles darlingi 22 American malaria mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis brenneri   1 1
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   1 1
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   1 1
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   2 2
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   1 1
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Thecamonas trahens ATCC 50062   1 1
No Yes Cryptobacterium curtum DSM 15641   2 2
No Yes Eggerthella sp. YY7918   4 4
No Yes Eggerthella lenta DSM 2243   2 2
No Yes Slackia heliotrinireducens DSM 20476   1 1
No Yes Dehalococcoides ethenogenes 195   1 1
No Yes Dehalococcoides sp. BAV1   1 1
No Yes Dehalogenimonas lykanthroporepellens BL-DC-9   2 2
No Yes Finegoldia magna ATCC 29328   1 1
No Yes Veillonella parvula DSM 2008   1 1
No Yes Megasphaera elsdenii DSM 20460   1 1
No Yes Acidaminococcus intestini RyC-MR95   1 1
No Yes Acidaminococcus fermentans DSM 20731   2 2
No Yes Natranaerobius thermophilus JW/NM-WN-LF   3 3
No Yes Clostridiales genomosp. BVAB3 str. UPII9-5   1 1
No Yes Clostridium clariflavum DSM 19732   2 2
No Yes Clostridium cellulolyticum H10   1 1
No Yes Clostridium thermocellum ATCC 27405   2 2
No Yes Ethanoligenens harbinense YUAN-3   2 2
No Yes Ruminococcus sp.   1 1
No Yes Oscillibacter valericigenes Sjm18-20   2 2
No Yes butyrate-producing bacterium SS3/4   2 2
No Yes Candidatus Desulforudis audaxviator MP104C   2 2
No Yes Thermincola potens JR   3 3
No Yes Pelotomaculum thermopropionicum SI   4 4
No Yes Desulfosporosinus acidiphilus SJ4   4 4
No Yes Desulfosporosinus orientis DSM 765   8 8
No Yes Dehalobacter sp. DCA   2 2
No Yes Dehalobacter sp. CF   2 2
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Desulfitobacterium hafniense Y51   6 6
No Yes Desulfitobacterium dehalogenans ATCC 51507   5 5
No Yes Desulfotomaculum reducens MI-1   4 4
No Yes Desulfotomaculum acetoxidans DSM 771   4 4
No Yes Desulfotomaculum kuznetsovii DSM 6115   4 4
No Yes Desulfotomaculum carboxydivorans CO-1-SRB   4 4
No Yes Desulfotomaculum ruminis DSM 2154   4 4
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Eubacterium eligens ATCC 27750   1 1
No Yes Clostridium difficile 630   2 2
No Yes Clostridium sticklandii DSM 519   1 1
No Yes Filifactor alocis ATCC 35896   1 1
No Yes Clostridium saccharolyticum WM1   3 3
No Yes [Ruminococcus] obeum   1 1
No Yes [Ruminococcus] torques   1 1
No Yes Eubacterium rectale M104/1   1 1
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Roseburia hominis A2-183   2 2
No Yes Roseburia intestinalis   1 1
No Yes Butyrivibrio proteoclasticus B316   2 2
No Yes Butyrivibrio fibrisolvens   2 2
No Yes Syntrophothermus lipocalidus DSM 12680   4 4
No Yes Syntrophomonas wolfei subsp. wolfei str. Goettingen   5 5
No Yes Heliobacterium modesticaldum Ice1   3 3
No Yes Alkaliphilus oremlandii OhILAs   2 2
No Yes Alkaliphilus metalliredigens QYMF   4 4
No Yes Clostridium sp. BNL1100   2 2
No Yes Clostridium novyi NT   3 3
No Yes Clostridium ljungdahlii DSM 13528   2 2
No Yes Clostridium kluyveri DSM 555   2 2
No Yes Clostridium beijerinckii NCIMB 8052   1 1
No Yes Clostridium tetani E88   1 1
No Yes Clostridium botulinum A str. ATCC 3502   6 6
No Yes Clostridium acetobutylicum ATCC 824   2 2
No Yes Mahella australiensis 50-1 BON   1 1
No Yes Thermosediminibacter oceani DSM 16646   3 3
No Yes Caldicellulosiruptor obsidiansis OB47   2 2
No Yes Caldicellulosiruptor kronotskyensis 2002   2 2
No Yes Caldicellulosiruptor hydrothermalis 108   3 3
No Yes Caldicellulosiruptor owensensis OL   2 2
No Yes Caldicellulosiruptor lactoaceticus 6A   3 3
No Yes Caldicellulosiruptor kristjanssonii 177R1B   3 3
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   3 3
No Yes Caldicellulosiruptor bescii DSM 6725   3 3
No Yes Thermoanaerobacterium xylanolyticum LX-11   2 2
No Yes Thermoanaerobacterium thermosaccharolyticum DSM 571   2 2
No Yes Thermodesulfobium narugense DSM 14796   1 1
No Yes Tepidanaerobacter acetatoxydans Re1   2 2
No Yes Thermoanaerobacter tengcongensis MB4   3 3
No Yes Carboxydothermus hydrogenoformans Z-2901   6 6
No Yes Moorella thermoacetica ATCC 39073   5 5
No Yes Ammonifex degensii KC4   2 2
No Yes Thermoanaerobacter mathranii subsp. mathranii str. A3   3 3
No Yes Thermoanaerobacter pseudethanolicus ATCC 33223   3 3
No Yes Thermoanaerobacter sp. X514   3 3
No Yes Thermoanaerobacter italicus Ab9   3 3
No Yes Thermoanaerobacter wiegelii Rt8.B1   3 3
No Yes Thermoanaerobacter brockii subsp. finnii Ako-1   3 3
No Yes Acetohalobium arabaticum DSM 5501   5 5
No Yes Halothermothrix orenii H 168   2 2
No Yes Halanaerobium hydrogeniformans   1 1
No Yes Halanaerobium praevalens DSM 2228   2 2
No Yes Candidatus Cloacamonas acidaminovorans   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Saprospira grandis str. Lewin   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Belliella baltica DSM 15883   1 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Marivirga tractuosa DSM 4126   2 2
No Yes Fibrella aestuarina   1 1
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Cytophaga hutchinsonii ATCC 33406   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Parabacteroides distasonis ATCC 8503   1 1
No Yes Tannerella forsythia ATCC 43037   2 2
No Yes Paludibacter propionicigenes WB4   1 1
No Yes Bacteroides sp. CF50   2 2
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Prevotella intermedia 17   1 1
No Yes Prevotella denticola F0289   1 1
No Yes Prevotella ruminicola 23   1 1
No Yes Porphyromonas gingivalis ATCC 33277   2 1
No Yes Alistipes finegoldii DSM 17242   1 1
No Yes Bacteroides salanitronis DSM 18170   1 1
No Yes Bacteroides helcogenes P 36-108   2 2
No Yes Bacteroides vulgatus ATCC 8482   1 1
No Yes Bacteroides thetaiotaomicron VPI-5482   2 1
No Yes Bacteroides fragilis YCH46   2 2
No Yes Pedobacter saltans DSM 12145   4 4
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Pedobacter heparinus DSM 2366   3 3
No Yes Sphingobacterium sp. 21   2 2
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Zunongwangia profunda SM-A87   1 1
No Yes Krokinobacter sp. 4H-3-7-5   1 1
No Yes Gramella forsetii KT0803   1 1
No Yes Lacinutrix sp. 5H-3-7-4   1 1
No Yes Maribacter sp. HTCC2170   1 1
No Yes Robiginitalea biformata HTCC2501   1 1
No Yes Croceibacter atlanticus HTCC2559   1 1
No Yes Aequorivita sublithincola DSM 14238   1 1
No Yes Zobellia galactanivorans   1 1
No Yes Muricauda ruestringensis DSM 13258   1 1
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Cellulophaga lytica DSM 7489   1 1
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Polaribacter sp. MED152   2 2
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   1 1
No Yes Ornithobacterium rhinotracheale DSM 15997   1 1
No Yes Capnocytophaga canimorsus Cc5   1 1
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Flavobacterium indicum GPTSA100-9   1 1
No Yes Flavobacterium psychrophilum JIP02/86   1 1
No Yes Flavobacterium branchiophilum FL-15   1 1
No Yes Flavobacterium columnare ATCC 49512   1 1
No Yes Flavobacterium johnsoniae UW101   1 1
No Yes Fretibacterium fastidiosum   1 1
No Yes Thermanaerovibrio acidaminovorans DSM 6589   1 1
No Yes Brachyspira murdochii DSM 12563   2 2
No Yes Brachyspira intermedia PWS/A   1 1
No Yes Brachyspira pilosicoli 95/1000   2 2
No Yes Brachyspira hyodysenteriae WA1   1 1
No Yes Sphaerochaeta pleomorpha str. Grapes   1 1
No Yes Treponema primitia ZAS-2   2 2
No Yes Treponema denticola ATCC 35405   1 1
No Yes Thermodesulfatator indicus DSM 15286   1 1
No Yes Thermodesulfobacterium sp. OPB45   2 2
No Yes Calditerrivibrio nitroreducens DSM 19672   1 1
No Yes Deferribacter desulfuricans SSM1   1 1
No Yes Flexistipes sinusarabici DSM 4947   1 1
No Yes Mesotoga prima MesG1.Ag.4.2   2 2
No Yes Kosmotoga olearia TBF 19.5.1   1 1
No Yes Thermotoga lettingae TMO   1 1
No Yes Thermotoga thermarum DSM 5069   2 2
No Yes Thermotoga sp. RQ2   1 1
No Yes Thermotoga petrophila RKU-1   1 1
No Yes Thermotoga maritima MSB8   1 1
No Yes Desulfurobacterium thermolithotrophum DSM 11699   1 1
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Dictyoglomus thermophilum H-6-12   1 1
No Yes Thermodesulfovibrio yellowstonii DSM 11347   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Ilyobacter polytropus DSM 2926   1 1
No Yes Fusobacterium nucleatum subsp. nucleatum ATCC 25586   2 2
No Yes Sulfurospirillum deleyianum DSM 6946   1 1
No Yes Sulfurospirillum barnesii SES-3   1 1
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Campylobacter curvus 525.92   1 1
No Yes Campylobacter concisus 13826   1 1
No Yes Sulfuricurvum kujiense DSM 16994   1 1
No Yes Sulfurimonas denitrificans DSM 1251   1 1
No Yes Wolinella succinogenes DSM 1740   1 1
No Yes Helicobacter hepaticus ATCC 51449   1 1
No Yes Desulfarculus baarsii DSM 2075   1 1
No Yes Desulfobacca acetoxidans DSM 11109   2 2
No Yes Syntrophus aciditrophicus SB   1 1
No Yes Desulfomonile tiedjei DSM 6799   5 5
No Yes Syntrophobacter fumaroxidans MPOB   2 2
No Yes Desulfurivibrio alkaliphilus AHT2   1 1
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Desulfobulbus propionicus DSM 2032   1 1
No Yes Desulfatibacillum alkenivorans AK-01   8 8
No Yes Desulfobacterium autotrophicum HRM2   2 2
No Yes Desulfococcus oleovorans Hxd3   6 6
No Yes Desulfomicrobium baculatum DSM 4028   1 1
No Yes Desulfovibrio piezophilus   1 1
No Yes Desulfovibrio aespoeensis Aspo-2   1 1
No Yes Desulfovibrio magneticus RS-1   1 1
No Yes Desulfovibrio alaskensis G20   1 1
No Yes Desulfovibrio vulgaris subsp. vulgaris DP4   1 1
No Yes Desulfovibrio salexigens DSM 2638   2 2
No Yes Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774   2 2
No Yes Desulfovibrio africanus str. Walvis Bay   2 2
No Yes Geobacter daltonii FRC-32   2 2
No Yes Geobacter sp. M21   2 2
No Yes Geobacter uraniireducens Rf4   3 3
No Yes Geobacter lovleyi SZ   3 3
No Yes Geobacter bemidjiensis Bem   3 3
No Yes Geobacter sulfurreducens KN400   3 3
No Yes Geobacter metallireducens GS-15   1 1
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Pelobacter carbinolicus DSM 2380   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. KH32C   5 5
No Yes Aromatoleum aromaticum EbN1   4 4
No Yes Chromobacterium violaceum ATCC 12472   2 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia mallei SAVP1   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Collimonas fungivorans Ter331   4 2
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Gallionella capsiferriformans ES-2   1 1
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   2 2
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   1 1
No Yes Alkalilimnicola ehrlichii MLHE-1   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Escherichia fergusonii ATCC 35469   1 1
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Methanocella arvoryzae MRE50   2 2
No Yes Methanocella conradii HZ254   1 1
No Yes Methanocella paludicola SANAE   1 1
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanosaeta thermophila PT   1 1
No Yes Methanosaeta concilii GP6   1 1
No Yes Methanosalsum zhilinae DSM 4017   1 1
No Yes Methanohalobium evestigatum Z-7303   1 1
No Yes Methanococcoides burtonii DSM 6242   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanohalophilus mahii DSM 5219   1 1
No Yes Methanosphaerula palustris E1-9c   2 2
No Yes Methanoregula boonei 6A8   2 2
No Yes Methanospirillum hungatei JF-1   1 1
No Yes Methanoplanus petrolearius DSM 11571   2 2
No Yes Methanoculleus bourgensis MS2   1 1
No Yes Methanoculleus marisnigri JR1   1 1
No Yes Methanopyrus kandleri AV19   2 2
No Yes Ferroglobus placidus DSM 10642   3 3
No Yes Archaeoglobus fulgidus DSM 4304   1 1
No Yes Thermoplasmatales archaeon BRNA1   1 1
No Yes Methanotorris igneus Kol 5   2 2
No Yes Methanocaldococcus sp. FS406-22   1 1
No Yes Methanocaldococcus fervens AG86   1 1
No Yes Methanocaldococcus vulcanius M7   2 2
No Yes methanocaldococcus infernus ME   2 2
No Yes Methanocaldococcus jannaschii DSM 2661   1 1
No Yes Methanothermococcus okinawensis IH1   2 2
No Yes Methanococcus aeolicus Nankai-3   2 2
No Yes Methanococcus maripaludis C5   1 1
No Yes Methanococcus voltae A3   2 2
No Yes Methanococcus vannielii SB   2 2
No Yes Methanothermus fervidus DSM 2088   1 1
No Yes Methanothermobacter marburgensis str. Marburg   1 1
No Yes Methanothermobacter thermautotrophicus str. Delta H   1 1
No Yes Methanosphaera stadtmanae DSM 3091   1 1
No Yes Methanobrevibacter sp. AbM4   1 1
No Yes Methanobrevibacter ruminantium M1   1 1
No Yes Methanobrevibacter smithii ATCC 35061   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 2 1
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 1 1
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Gordonibacter pamelaeae 7-10-1-b   1 1
No Yes Adlercreutzia equolifaciens DSM 19450   1 1
No Yes Propionibacterium acnes ATCC 11828   1 1
No Yes Dehalococcoides mccartyi GY50   1 1
No Yes Dehalococcoides mccartyi DCMB5   1 1
No Yes Dehalococcoides mccartyi BTF08   1 1
No Yes Dehalococcoides sp. GT   1 1
No Yes Dehalococcoides sp. VS   1 1
No Yes Dehalococcoides sp. CBDB1   1 1
No Yes [Eubacterium] cylindroides [Eubacterium] cylindroides T2-87   1 1
No Yes Clostridium thermocellum DSM 1313   2 2
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   2 2
No Yes Clostridium acidurici 9a   5 5
No Yes Desulfosporosinus meridiei DSM 13257   7 7
No Yes Desulfitobacterium dichloroeliminans LMG P-21439   7 7
No Yes Desulfitobacterium hafniense DCB-2   7 7
No Yes Desulfotomaculum gibsoniae DSM 7213   5 5
No Yes Clostridium difficile BI1   2 2
No Yes Clostridium difficile R20291   2 2
No Yes Clostridium difficile CD196   2 2
No Yes Clostridium saccharolyticum Clostridium cf. saccharolyticum K10   1 1
No Yes Coprococcus catus GD/7   5 5
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Clostridium sp. SY8519   3 3
No Yes Clostridium saccharobutylicum DSM 13864   1 1
No Yes Clostridium autoethanogenum DSM 10061   2 2
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   2 2
No Yes Clostridium kluyveri NBRC 12016   2 2
No Yes Clostridium tetani genome 12124569   1 1
No Yes Clostridium pasteurianum BC1   2 2
No Yes Clostridium botulinum H04402 065   6 6
No Yes Clostridium botulinum BKT015925   3 3
No Yes Clostridium botulinum F str. 230613   5 5
No Yes Clostridium botulinum F str. Langeland   6 6
No Yes Clostridium botulinum E3 str. Alaska E43   2 2
No Yes Clostridium botulinum B1 str. Okra   6 6
No Yes Clostridium botulinum Ba4 str. 657   6 6
No Yes Clostridium botulinum A2 str. Kyoto   6 6
No Yes Clostridium botulinum A3 str. Loch Maree   6 6
No Yes Clostridium botulinum A str. Hall   5 5
No Yes Clostridium botulinum A str. ATCC 19397   6 6
No Yes Clostridium acetobutylicum DSM 1731   2 2
No Yes Clostridium acetobutylicum EA 2018   2 2
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Thermoanaerobacterium thermosaccharolyticum M0795   2 2
No Yes Thermacetogenium phaeum DSM 12270   3 3
No Yes Thermoanaerobacter sp. X513   3 3
No Yes Halobacteroides halobius DSM 5150   1 1
No Yes Echinicola vietnamensis DSM 17526   2 2
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Prevotella dentalis DSM 3688   1 1
No Yes Porphyromonas gingivalis TDC60   2 1
No Yes Porphyromonas gingivalis W83   2 1
No Yes Alistipes shahii WAL 8301   1 1
No Yes Bacteroides xylanisolvens XB1A   2 1
No Yes Bacteroides fragilis 638R   2 2
No Yes Bacteroides fragilis NCTC 9343   3 2
No Yes Nonlabens dokdonensis DSW-6   1 1
No Yes Psychroflexus torquis ATCC 700755   1 1
No Yes Riemerella anatipestifer RA-CH-2   1 1
No Yes Riemerella anatipestifer RA-CH-1   1 1
No Yes Riemerella anatipestifer RA-GD   1 1
No Yes Riemerella anatipestifer ATCC 11845 = DSM 15868   1 1
No Yes Brachyspira pilosicoli WesB   2 2
No Yes Brachyspira pilosicoli B2904   2 2
No Yes Brachyspira pilosicoli P43/6/78   2 2
No Yes Treponema pedis str. T A4   1 1
No Yes Thermotoga maritima MSB8   1 1
No Yes Fusobacterium nucleatum subsp. vincentii 3_1_36A2   2 2
No Yes Fusobacterium nucleatum subsp. animalis 4_8   2 2
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Desulfobacula toluolica Tol2   3 3
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   4 4
No Yes Desulfovibrio vulgaris RCH1   1 1
No Yes Desulfovibrio vulgaris str. 'Miyazaki F'   1 1
No Yes Desulfovibrio vulgaris str. Hildenborough   1 1
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   1 1
No Yes Desulfovibrio desulfuricans ND132   1 1
No Yes Geobacter sp. M18   2 2
No Yes Geobacter sulfurreducens PCA   3 3
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Burkholderia lata   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia cepacia GG4   1 1
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris BisB18   3 3
No Yes Rhodopseudomonas palustris CGA009   2 2
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Proteus mirabilis BB2000   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Raoultella ornithinolytica B6   1 1
No Yes Shigella dysenteriae 1617   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae KCTC 2242   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli E24377A   1 1
No Yes Escherichia coli E. coli PMV-1   1 1
No Yes Escherichia coli JJ1886   1 1
No Yes Escherichia coli LY180   1 1
No Yes Escherichia coli APEC O78   1 1
No Yes Escherichia coli O7:K1 str. CE10   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2071   1 1
No Yes Escherichia coli O104:H4 str. 2011C-3493   1 1
No Yes Escherichia coli NA114   1 1
No Yes Escherichia coli P12b   1 1
No Yes Escherichia coli str. 'clone D i2'   1 1
No Yes Escherichia coli str. 'clone D i14'   1 1
No Yes Escherichia coli UM146   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli IHE3034   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli KO11FL   1 1
No Yes Escherichia coli LF82   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli 55989   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli IAI1   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli W   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli ATCC 8739   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli BL21(DE3)   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli APEC O1   1 1
No Yes Escherichia coli O103:H2 str. 12009   1 1
No Yes Escherichia coli UTI89   1 1
No Yes Escherichia coli 536   1 1
No Yes Escherichia coli HS   1 1
No Yes Escherichia coli ETEC H10407   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Escherichia coli O26:H11 str. 11368   1 1
No Yes Escherichia coli CFT073   1 1
No Yes Escherichia coli O111:H- str. 11128   1 1
No Yes Escherichia coli O127:H6 str. E2348/69   1 1
No Yes Escherichia coli O157:H7 str. TW14359   1 1
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   1 1
No Yes Escherichia coli O157:H7 str. EDL933   1 1
No Yes Escherichia coli BW2952   1 1
No Yes Escherichia coli str. K-12 substr. MG1655   1 1
No Yes Escherichia coli str. K-12 substr. W3110   1 1
No Yes Escherichia coli B str. REL606   1 1
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Methanolobus psychrophilus R15   2 2
No Yes Archaeoglobus sulfaticallidus PM70-1   1 1
No Yes Methanococcus maripaludis X1   1 1
No Yes Methanococcus maripaludis C6   2 2
No Yes Methanococcus maripaludis C7   2 2
No Yes Methanococcus maripaludis S2   1 1
No Yes Methanobacterium sp. SWAN-1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 15 11
No Yes Homo sapiens (NCBI version) Human 2 1
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 2 1
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Homo sapiens 69_37 Human 2 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 2 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 2 1
No Yes Pongo abelii 69_2 Sumatran orangutan 2 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 2 1
No Yes Macaca mulatta 69_1 Rhesus monkey 2 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 2 1
No Yes Otolemur garnettii 69_3 Small-eared galago 2 1
No Yes Microcebus murinus 69_1 Gray mouse lemur 2 1
No Yes Rattus norvegicus 69_3.4 Norway rat 2 1
No Yes Mus musculus 69_38 House mouse 2 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 2 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 2 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 2 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 2 1
No Yes Ochotona princeps 69 American pika 1 1
No Yes Tupaia belangeri 69 Northern tree shrew 3 2
No Yes Sus scrofa 69_10.2 Pig 2 1
No Yes Bos taurus 69_3.1 Cattle 2 1
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 2 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 2 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Felis catus 69 Domestic cat 2 1
No Yes Equus caballus 69_2 Horse 2 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 2 1
No Yes Pteropus vampyrus 69_1 Large flying fox 2 1
No Yes Erinaceus europaeus 69 Western European hedgehog 2 1
No Yes Procavia capensis 69_1 Cape rock hyrax 2 1
No Yes Loxodonta africana 69_3 African savanna elephant 2 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 2 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 2 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 2 1
No Yes Ornithorhynchus anatinus 69_5 Platypus 1 1
No Yes Petromyzon marinus 69_7.0 Sea lamprey 2 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 1
No Yes Anolis carolinensis 69_2.0 Green anole 2 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 1
No Yes Latimeria chalumnae 69_1 Coelacanth 2 1
No Yes Gadus morhua 69_1 Atlantic cod 2 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 2 1
No Yes Takifugu rubripes 69_4 Torafugu 2 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 2 1
No Yes Oryzias latipes 69_1 Japanese medaka 2 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 1
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 2 1
No Yes Danio rerio 69_9 Zebrafish 2 1
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes Drosophila melanogaster 69_5 Fruit fly 1 1
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Combined (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   2 2
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   4 4
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   11 11
No Yes Fungus garden combined (combined) (meta-genome)   2 2
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   6 6
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Human Gut Community Subject 7 (meta-genome)   2 2
No Yes Human Gut Community Subject 8 (meta-genome)   5 5
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   11 11
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   6 6
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   22 22
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   8 8
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   7 7
No Yes NCBI 2017_08 genome   21982 21470
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 1
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   3 3
No Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   4 4
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   7 7
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   9 9
No Yes STRING v9.0.5 (STRING)   433 406
No Yes Uniprot 2018_03 genome   7887 7545
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   25 25
No Yes Global Ocean Sampling Expedition (GOS)   77 77
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   11 6
No Yes Protein Data Bank (all PDB sequenc)   41 24
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   112 112
No Yes TargetDB (Targets)   28 18

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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