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Cytoplasmic domain of inward rectifier potassium channel family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   17855 17855
No Yes Homo sapiens 76_38 Human 37 37
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 15 15
No Yes Gorilla gorilla 76_3.1 Western gorilla 17 17
No Yes Pongo abelii 76_2 Sumatran orangutan 13 13
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 11 11
No Yes Papio anubis 76 Olive baboon 16 16
No Yes Macaca mulatta 76_1 Rhesus monkey 15 15
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 20 20
No Yes Otolemur garnettii 76_3 Small-eared galago 15 15
No Yes Microcebus murinus 76_1 Gray mouse lemur 12 12
No Yes Rattus norvegicus 76_5.0 Norway rat 15 15
No Yes Mus musculus 76_38 House mouse 30 30
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 10 10
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 13 13
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 15 15
No Yes Cavia porcellus 76_3 Domestic guinea pig 18 18
No Yes Oryctolagus cuniculus 76_2 Rabbit 12 12
No Yes Ochotona princeps 76 American pika 10 10
No Yes Tupaia belangeri 76 Northern tree shrew 8 8
No Yes Sus scrofa 76_10.2 Pig 13 13
No Yes Bos taurus 76_3.1 Cattle 13 13
No Yes Ovis aries 76_3.1 Sheep 14 14
No Yes Vicugna pacos 76_1 Alpaca 4 4
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 12 12
No Yes Mustela putorius furo 76_1.0 Domestic ferret 15 15
No Yes Ailuropoda melanoleuca 76_1 Giant panda 13 13
No Yes Canis familiaris 76_3.1 Dog 13 13
No Yes Felis catus 76_6.2 Domestic cat 14 14
No Yes Equus caballus 76_2 Horse 13 13
No Yes Myotis lucifugus 76_2.0 Little brown bat 14 14
No Yes Pteropus vampyrus 76_1 Large flying fox 11 11
No Yes Sorex araneus 76_1 European shrew 8 8
No Yes Erinaceus europaeus 76 Western European hedgehog 10 10
No Yes Procavia capensis 76_1 Cape rock hyrax 11 11
No Yes Loxodonta africana 76_3 African savanna elephant 15 15
No Yes Echinops telfairi 76 Small Madagascar hedgehog 7 7
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 15 15
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 8 8
No Yes Macropus eugenii 76_1.0 Tammar wallaby 11 11
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 12 12
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 14 14
No Yes Ornithorhynchus anatinus 76_5 Platypus 14 14
No Yes Saccoglossus kowalevskii v3.0   4 4
No Yes Petromyzon marinus 76_7.0 Sea lamprey 9 9
No Yes Meleagris gallopavo 76_2 Turkey 14 14
No Yes Gallus gallus 76_4 Chicken 13 13
No Yes Anas platyrhynchos 76_1.0 Mallard 14 14
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 13 13
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 16 16
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 17 17
No Yes Anolis carolinensis 76_2.0 Green anole 16 16
No Yes Xenopus laevis African clawed frog 12 12
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 14 14
No Yes Latimeria chalumnae 76_1 Coelacanth 20 20
No Yes Lepisosteus oculatus 76 Spotted gar 16 16
No Yes Gadus morhua 76_1 Atlantic cod 27 27
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 23 23
No Yes Takifugu rubripes 76_4 Torafugu 49 49
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 26 26
No Yes Oryzias latipes 76_1 Japanese medaka 32 32
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 22 22
No Yes Poecilia formosa 76 Amazon molly 27 27
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 25 25
No Yes Astyanax mexicanus 76 Mexican tetra 30 30
No Yes Danio rerio 76_9 Zebrafish 37 37
No Yes Oikopleura dioica   8 8
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 4 4
No Yes Ciona intestinalis 76 Vase tunicate 3 3
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 4 4
No Yes Adineta vaga   11 11
No Yes Octopus bimaculoides 280   7 7
No Yes Crassostrea gigas 22 Pacific oyster 5 5
No Yes Lottia gigantea Owl limpet 4 4
No Yes Helobdella robusta   11 11
No Yes Capitella sp. I   6 6
No Yes Danaus plexippus OGS1.0 Monarch butterfly 4 4
No Yes Heliconius melpomene Postman butterfly 5 5
No Yes Bombyx mori Domestic silkworm 3 3
No Yes Nasonia vitripennis Jewel wasp 2 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 3 3
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 2
No Yes Linepithema humile v1.1 Argentine ant 2 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 2 2
No Yes Lucilia cuprina Australian sheep blowfly 2 2
No Yes Drosophila grimshawi 1.3   3 3
No Yes Drosophila willistoni 1.3   3 3
No Yes Drosophila pseudoobscura 2.13   4 4
No Yes Drosophila persimilis 1.3   2 2
No Yes Drosophila suzukii   2 2
No Yes Drosophila yakuba 1.3   2 2
No Yes Drosophila simulans 1.3   3 3
No Yes Drosophila sechellia 1.3   2 2
No Yes Drosophila melanogaster 76_5 Fruit fly 7 7
No Yes Drosophila erecta 1.3   2 2
No Yes Drosophila ananassae 1.3   2 2
No Yes Drosophila virilis 1.2   2 2
No Yes Drosophila mojavensis 1.3   2 2
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 7 7
No Yes Culex pipiens quinquefasciatus Southern house mosquito 5 5
No Yes Anopheles darlingi 22 American malaria mosquito 5 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 3 3
No Yes Tribolium castaneum 3.0 Red flour beetle 5 5
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 2 2
No Yes Rhodnius prolixus 22   3 3
No Yes Daphnia pulex Common water flea 2 2
No Yes Strigamia maritima 22   1 1
No Yes Tetranychus urticae Two-spotted spider mite 3 3
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   2 2
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   3 3
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 4 4
No Yes Caenorhabditis japonica   3 3
No Yes Caenorhabditis brenneri   2 2
No Yes Caenorhabditis remanei   3 3
No Yes Caenorhabditis elegans 76_235 Roundworm 6 6
No Yes Caenorhabditis briggsae 2   3 3
No Yes Trichinella spiralis 22   1 1
No Yes Acropora digitifera v1.0   3 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 5 5
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   2 2
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Gemmatimonas aurantiaca T-27   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Fibrella aestuarina   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Solitalea canadensis DSM 3403   1 1
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Anaeromyxobacter sp. Fw109-5   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia pickettii 12D   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1   2 2
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans 621H   1 1
No Yes Acetobacter pasteurianus IFO 3283-01   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 22 22
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 7 7
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 7 7
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 4 4
No Yes Chroococcidiopsis thermalis PCC 7203   1 1
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Cyanothece sp. PCC 7822   2 2
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Cyanothece sp. PCC 7424   2 2
No Yes Cyanothece sp. ATCC 51142   2 2
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Anaeromyxobacter sp. K   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-C   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia lata   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia cepacia GG4   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans H24   1 1
No Yes Acetobacter pasteurianus 386B   1 1
No Yes Acetobacter pasteurianus IFO 3283-12   1 1
No Yes Acetobacter pasteurianus IFO 3283-01-42C   1 1
No Yes Acetobacter pasteurianus IFO 3283-32   1 1
No Yes Acetobacter pasteurianus IFO 3283-26   1 1
No Yes Acetobacter pasteurianus IFO 3283-22   1 1
No Yes Acetobacter pasteurianus IFO 3283-07   1 1
No Yes Acetobacter pasteurianus IFO 3283-03   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 37 37
No Yes Homo sapiens (NCBI version) Human 27 27
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 14 14
No Yes Loa loa v3.3 (Request) Eye worm 3 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Homo sapiens 69_37 Human 16 16
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 15 15
No Yes Gorilla gorilla 69_3.1 Western gorilla 15 15
No Yes Pongo abelii 69_2 Sumatran orangutan 13 13
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 11 11
No Yes Macaca mulatta 69_1 Rhesus monkey 13 13
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 12 12
No Yes Otolemur garnettii 69_3 Small-eared galago 14 14
No Yes Microcebus murinus 69_1 Gray mouse lemur 12 12
No Yes Rattus norvegicus 69_3.4 Norway rat 14 14
No Yes Mus musculus 69_38 House mouse 14 14
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 10 10
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 13 13
No Yes Cavia porcellus 69_3 Domestic guinea pig 14 14
No Yes Oryctolagus cuniculus 69_2 Rabbit 12 12
No Yes Ochotona princeps 69 American pika 10 10
No Yes Tupaia belangeri 69 Northern tree shrew 8 8
No Yes Sus scrofa 69_10.2 Pig 13 13
No Yes Bos taurus 69_3.1 Cattle 13 13
No Yes Vicugna pacos 69_1 Alpaca 4 4
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 12 12
No Yes Mustela putorius furo 69_1.0 Domestic ferret 15 15
No Yes Ailuropoda melanoleuca 69_1 Giant panda 13 13
No Yes Canis familiaris 69_3.1 Dog 12 12
No Yes Felis catus 69 Domestic cat 9 9
No Yes Equus caballus 69_2 Horse 13 13
No Yes Myotis lucifugus 69_2.0 Little brown bat 14 14
No Yes Pteropus vampyrus 69_1 Large flying fox 11 11
No Yes Sorex araneus 69_1 European shrew 8 8
No Yes Erinaceus europaeus 69 Western European hedgehog 10 10
No Yes Procavia capensis 69_1 Cape rock hyrax 11 11
No Yes Loxodonta africana 69_3 African savanna elephant 13 13
No Yes Echinops telfairi 69 Small Madagascar hedgehog 7 7
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 9 9
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 8 8
No Yes Macropus eugenii 69_1.0 Tammar wallaby 11 11
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 12 12
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 14 14
No Yes Ornithorhynchus anatinus 69_5 Platypus 13 13
No Yes Petromyzon marinus 69_7.0 Sea lamprey 9 9
No Yes Meleagris gallopavo 69_2 Turkey 14 14
No Yes Gallus gallus 69_2 Chicken 13 13
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 13 13
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 15 15
No Yes Anolis carolinensis 69_2.0 Green anole 16 16
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 14 14
No Yes Latimeria chalumnae 69_1 Coelacanth 20 20
No Yes Gadus morhua 69_1 Atlantic cod 21 21
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 23 23
No Yes Takifugu rubripes 69_4 Torafugu 25 25
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 21 21
No Yes Oryzias latipes 69_1 Japanese medaka 20 20
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 22 22
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 23 23
No Yes Danio rerio 69_9 Zebrafish 28 28
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 69 Vase tunicate 3 3
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes Caenorhabditis elegans 69_215 Roundworm 4 4
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   9614 9612
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   3 3
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   6 6
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   4 4
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   494 494
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   4135 4102
No Yes Global Ocean Sampling Expedition (GOS)   6 6
No Yes NCBI plasmid sequences (Plasmids)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   131 131
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   190 190
No Yes TargetDB (Targets)   7 7

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.