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C5 cytosine-specific DNA methylase, DCM family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   66912 66912
No Yes Homo sapiens 76_38 Human 4 4
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 1 1
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Papio anubis 76 Olive baboon 1 1
No Yes Macaca mulatta 76_1 Rhesus monkey 4 4
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 76_3 Small-eared galago 1 1
No Yes Microcebus murinus 76_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 1 1
No Yes Mus musculus 76_38 House mouse 1 1
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Ochotona princeps 76 American pika 1 1
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 2 2
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 1 1
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 1 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 1 1
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 1 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 76_1 Large flying fox 1 1
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Procavia capensis 76_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 1 1
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 76_5 Platypus 1 1
No Yes Saccoglossus kowalevskii v3.0   1 1
No Yes Meleagris gallopavo 76_2 Turkey 3 3
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 76_2.0 Green anole 1 1
No Yes Xenopus laevis African clawed frog 2 2
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 1 1
No Yes Latimeria chalumnae 76_1 Coelacanth 1 1
No Yes Lepisosteus oculatus 76 Spotted gar 1 1
No Yes Gadus morhua 76_1 Atlantic cod 1 1
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 5 5
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 2 2
No Yes Oryzias latipes 76_1 Japanese medaka 3 3
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 1 1
No Yes Poecilia formosa 76 Amazon molly 1 1
No Yes Astyanax mexicanus 76 Mexican tetra 1 1
No Yes Danio rerio 76_9 Zebrafish 1 1
No Yes Oikopleura dioica   1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 5 5
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Adineta vaga   2 2
No Yes Octopus bimaculoides 280   1 1
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Lottia gigantea Owl limpet 1 1
No Yes Helobdella robusta   1 1
No Yes Capitella sp. I   1 1
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   1 1
No Yes Drosophila yakuba 1.3   1 1
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 2 2
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles darlingi 22 American malaria mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 2
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   1 1
No Yes Sarcoptes scabiei   1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   1 1
No Yes Trichinella spiralis 22   1 1
No Yes Echinococcus multilocularis   1 1
No Yes Echinococcus granulosus   1 1
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Acropora digitifera v1.0   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 1 1
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   2 2
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   1 1
No Yes Sphaeroforma arctica JP610   2 2
No Yes Conidiobolus coronatus NRRL28638 v1.0   2 2
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Phycomyces blakesleeanus   2 2
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Mucor circinelloides   2 2
No Yes Rhizomucor miehei CAU432   2 2
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Serpula lacrymans var. lacrymans S7.9   1 1
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   1 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   1 1
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Coprinopsis cinerea okayama7 130 v3   1 1
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   1 1
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   1 1
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   1 1
No Yes Trametes versicolor v1.0   1 1
No Yes Schizosaccharomyces cryophilus OY26 22   1 1
No Yes Schizosaccharomyces octosporus yFS286   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 1 1
No Yes Catenaria anguillulae PL171 v1.0   3 3
No Yes Allomyces macrogynus ATCC 38327   6 6
No Yes Spizellomyces punctatus DAOM BR117   2 2
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Entamoeba dispar 1.2   1 1
No Yes Entamoeba invadens 1.2   1 1
No Yes Entamoeba histolytica 1   1 1
No Yes Selaginella moellendorffii   2 2
No Yes Eucalyptus grandis v201 Rose gum 2 2
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   1 1
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 1 1
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 2 2
No Yes Phaseolus vulgaris v186 French bean 2 2
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 3 3
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 1 1
No Yes Prunus persica v139 Peach 1 1
No Yes Linum usitatissimum v200 Flax 2 2
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Aquilegia coerulea v195   3 3
No Yes Triticum aestivum 22 Bread wheat 3 3
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 2 2
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   2 2
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   2 2
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 3 3
No Yes Oryza sativa v193 Rice 3 3
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 1 1
No Yes Panicum virgatum v202 Switchgrass 3 3
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 6 6
No Yes Zea mays v181 Maize 6 6
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 1 1
No Yes Musa acuminata 22 Wild Malaysian banana 1 1
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Ostreococcus sp. RCC809   2 2
No Yes Ostreococcus lucimarinus CCE9901   2 2
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   1 1
No Yes Micromonas sp. RCC299   3 3
No Yes Micromonas pusilla CCMP1545 v3.0   3 3
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Ectocarpus siliculosus   1 1
No Yes Phaeodactylum tricornutumCCAP 1055/1   2 2
No Yes Fragilariopsis cylindrus   2 2
No Yes Cryptosporidium muris   1 1
No Yes Neospora caninum   1 1
No Yes Toxoplasma gondii ME49   1 1
No Yes Symbiodinium minutum clade B1 v1.2   4 4
No Yes Naegleria gruberi   1 1
No Yes Guillardia theta CCMP2712 v1.0   2 2
No Yes Emiliania huxleyi CCMP1516   5 5
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Pseudanabaena sp. PCC 7367   2 2
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Synechococcus sp. PCC 7502   2 2
No Yes Synechococcus sp. PCC 6312   2 2
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Microcoleus sp. PCC 7113   4 4
No Yes Trichodesmium erythraeum IMS101   2 2
No Yes Cyanothece sp. PCC 8802   5 5
No Yes Gloeocapsa sp. PCC 7428   3 3
No Yes Halothece sp. PCC 7418   8 8
No Yes Microcystis aeruginosa NIES-843   6 6
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   2 2
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   2 2
No Yes Anabaena sp. 90   4 4
No Yes Ureaplasma urealyticum serovar 10 str. ATCC 33699   1 1
No Yes Mycoplasma leachii 99/014/6   1 1
No Yes Mycoplasma mycoides subsp. capri LC str. 95010   1 1
No Yes Mycoplasma suis KI3806   1 1
No Yes Mycoplasma crocodyli MP145   2 2
No Yes Mycoplasma haemofelis Ohio2   2 2
No Yes Mycoplasma bovis HB0801   2 2
No Yes Mycoplasma penetrans HF-2   1 1
No Yes Mycoplasma arthritidis 158L3-1   1 1
No Yes Mycoplasma hominis ATCC 23114   1 1
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Brachybacterium faecium DSM 4810   1 1
No Yes Isoptericola variabilis 225   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Gardnerella vaginalis 409-05   1 1
No Yes Bifidobacterium animalis subsp. lactis Bl-04   1 1
No Yes Bifidobacterium adolescentis ATCC 15703   1 1
No Yes Mobiluncus curtisii ATCC 43063   1 1
No Yes Dehalococcoides sp. BAV1   1 1
No Yes Finegoldia magna ATCC 29328   3 3
No Yes Veillonella parvula DSM 2008   1 1
No Yes Acidaminococcus intestini RyC-MR95   1 1
No Yes Eubacterium siraeum   3 3
No Yes Clostridium cellulolyticum H10   2 2
No Yes Clostridium thermocellum ATCC 27405   2 2
No Yes Faecalibacterium prausnitzii   2 2
No Yes Ruminococcus albus 7   2 2
No Yes Oscillibacter valericigenes Sjm18-20   1 1
No Yes butyrate-producing bacterium SS3/4   1 1
No Yes Desulfitobacterium dehalogenans ATCC 51507   1 1
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Eubacterium eligens ATCC 27750   2 2
No Yes Clostridium difficile 630   1 1
No Yes Clostridium sticklandii DSM 519   2 2
No Yes Filifactor alocis ATCC 35896   1 1
No Yes [Ruminococcus] obeum   2 2
No Yes [Ruminococcus] torques   2 2
No Yes Eubacterium rectale M104/1   1 1
No Yes Eubacterium rectale ATCC 33656   2 2
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Syntrophothermus lipocalidus DSM 12680   1 1
No Yes Heliobacterium modesticaldum Ice1   1 1
No Yes Alkaliphilus oremlandii OhILAs   1 1
No Yes Candidatus Arthromitus sp. SFB-mouse-Japan   1 1
No Yes Clostridium sp. BNL1100   2 2
No Yes Clostridium kluyveri DSM 555   1 1
No Yes Clostridium perfringens ATCC 13124   1 1
No Yes Clostridium cellulovorans 743B   1 1
No Yes Clostridium botulinum A str. ATCC 3502   1 1
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Halanaerobium hydrogeniformans   1 1
No Yes Halanaerobium praevalens DSM 2228   1 1
No Yes Carnobacterium sp. 17-4   1 1
No Yes Carnobacterium sp. WN1359   1 1
No Yes Enterococcus faecium Aus0004   2 2
No Yes Lactobacillus sanfranciscensis TMW 1.1304   1 1
No Yes Lactobacillus acidophilus 30SC   1 1
No Yes Pediococcus pentosaceus ATCC 25745   1 1
No Yes Streptococcus sp. I-P16   1 1
No Yes Streptococcus sp. I-G2   1 1
No Yes Streptococcus gallolyticus UCN34   1 1
No Yes Streptococcus pseudopneumoniae IS7493   1 1
No Yes Streptococcus pasteurianus ATCC 43144   2 2
No Yes Streptococcus dysgalactiae subsp. equisimilis GGS_124   1 1
No Yes Streptococcus macedonicus ACA-DC 198   1 1
No Yes Streptococcus mitis B6   4 4
No Yes Streptococcus pneumoniae P1031   1 1
No Yes Streptococcus thermophilus LMD-9   1 1
No Yes Streptococcus salivarius 57.I   1 1
No Yes Streptococcus gordonii str. Challis substr. CH1   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446   1 1
No Yes Solibacillus silvestris StLB046   1 1
No Yes Lysinibacillus sphaericus C3-41   2 2
No Yes Oceanobacillus iheyensis HTE831   1 1
No Yes Geobacillus sp. WCH70   1 1
No Yes Bacillus subtilis subsp. subtilis str. 168   1 1
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus weihenstephanensis KBAB4   2 2
No Yes Bacillus cereus 03BB102   2 2
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Bacillus coagulans 2-6   1 1
No Yes Staphylococcus pseudintermedius HKU10-03   1 1
No Yes Melioribacter roseus P3M   1 1
No Yes Chlorobium phaeobacteroides DSM 266   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Saprospira grandis str. Lewin   1 1
No Yes Flexibacter litoralis DSM 6794   4 4
No Yes Belliella baltica DSM 15883   2 2
No Yes Marivirga tractuosa DSM 4126   4 4
No Yes Runella slithyformis DSM 19594   2 2
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Prevotella ruminicola 23   2 2
No Yes Bacteroides salanitronis DSM 18170   3 3
No Yes Bacteroides fragilis YCH46   1 1
No Yes Pedobacter heparinus DSM 2366   2 2
No Yes Sphingobacterium sp. 21   1 1
No Yes Fluviicola taffensis DSM 16823   1 1
No Yes Maribacter sp. HTCC2170   2 2
No Yes Aequorivita sublithincola DSM 14238   2 2
No Yes Zobellia galactanivorans   1 1
No Yes Muricauda ruestringensis DSM 13258   1 1
No Yes Cellulophaga lytica DSM 7489   1 1
No Yes Capnocytophaga canimorsus Cc5   1 1
No Yes Capnocytophaga ochracea DSM 7271   1 1
No Yes Flavobacterium indicum GPTSA100-9   1 1
No Yes Flavobacterium psychrophilum JIP02/86   3 3
No Yes Flavobacterium branchiophilum FL-15   2 2
No Yes Flavobacterium columnare ATCC 49512   1 1
No Yes Flavobacterium johnsoniae UW101   1 1
No Yes Waddlia chondrophila WSU 86-1044   1 1
No Yes Brachyspira murdochii DSM 12563   2 2
No Yes Brachyspira intermedia PWS/A   1 1
No Yes Sphaerochaeta globus str. Buddy   1 1
No Yes Treponema succinifaciens DSM 2489   6 6
No Yes Desulfurobacterium thermolithotrophum DSM 11699   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Streptobacillus moniliformis DSM 12112   3 3
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1   1 1
No Yes Nitratifractor salsuginis DSM 16511   1 1
No Yes Sulfurospirillum deleyianum DSM 6946   1 1
No Yes Sulfurospirillum barnesii SES-3   2 2
No Yes Arcobacter sp. L   1 1
No Yes Arcobacter butzleri RM4018   1 1
No Yes Campylobacter curvus 525.92   1 1
No Yes Campylobacter concisus 13826   2 2
No Yes Sulfurimonas denitrificans DSM 1251   3 3
No Yes Helicobacter cetorum MIT 00-7128   1 1
No Yes Helicobacter bizzozeronii CIII-1   1 1
No Yes Helicobacter cinaedi PAGU611   3 3
No Yes Helicobacter acinonychis str. Sheeba   2 2
No Yes Helicobacter pylori B38   2 2
No Yes Desulfohalobium retbaense DSM 5692   1 1
No Yes Lawsonia intracellularis PHE/MN1-00   1 1
No Yes Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774   2 2
No Yes Geobacter lovleyi SZ   1 1
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Pseudogulbenkiania sp. NH8B   1 1
No Yes Laribacter hongkongensis HLHK9   1 1
No Yes Neisseria meningitidis alpha14   2 2
No Yes Neisseria meningitidis FAM18   3 3
No Yes Neisseria lactamica 020-06   5 5
No Yes Neisseria gonorrhoeae NCCP11945   4 4
No Yes Burkholderia phytofirmans PsJN   2 2
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Taylorella asinigenitalis MCE3   4 4
No Yes Taylorella equigenitalis MCE9   3 3
No Yes Methylovorus sp. MP688   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Maricaulis maris MCS10   1 1
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Roseobacter litoralis Och 149   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Rickettsia bellii OSU 85-389   2 2
No Yes Rickettsia felis URRWXCal2   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Haemophilus parasuis SH0165   3 3
No Yes Haemophilus influenzae PittEE   1 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Psychromonas sp. CNPT3   1 1
No Yes Idiomarina loihiensis L2TR   1 1
No Yes Shewanella piezotolerans WP3   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella sp. MR-4   1 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Marinomonas sp. MWYL1   1 1
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Halorhodospira halophila SL1   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   1 1
No Yes Xenorhabdus nematophila ATCC 19061   1 1
No Yes Edwardsiella ictaluri 93-146   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Pectobacterium sp. SCC3193   1 1
No Yes Pantoea sp. At-9b   1 1
No Yes Pantoea vagans C9-1   1 1
No Yes Pantoea ananatis LMG 20103   2 2
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Erwinia pyrifoliae Ep1/96   2 2
No Yes Erwinia amylovora ATCC 49946   2 2
No Yes Escherichia blattae DSM 4481   1 1
No Yes Cronobacter turicensis z3032   1 1
No Yes Cronobacter sakazakii ES15   1 1
No Yes Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)   1 1
No Yes Enterobacteriaceae bacterium strain FGI 57   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella flexneri 5 str. 8401   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Shigella boydii CDC 3083-94   1 1
No Yes Salmonella bongori NCTC 12419   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Escherichia fergusonii ATCC 35469   1 1
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Enterobacter sp. 638   1 1
No Yes Enterobacter asburiae LF7a   1 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   1 1
No Yes Citrobacter rodentium ICC168   1 1
No Yes Citrobacter koseri ATCC BAA-895   2 2
No Yes Psychrobacter sp. G   1 1
No Yes Moraxella catarrhalis RH4   2 2
No Yes Cycloclasticus sp. P1   1 1
No Yes Cenarchaeum symbiosum A   1 1
No Yes Candidatus Nitrosopumilus sp. AR2   1 1
No Yes Thermofilum sp. 1910b   1 1
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes Pyrobaculum sp. 1860   1 1
No Yes Pyrobaculum calidifontis JCM 11548   1 1
No Yes Pyrobaculum arsenaticum DSM 13514   1 1
No Yes Pyrobaculum oguniense TE7   1 1
No Yes Thermoproteus neutrophilus V24Sta   1 1
No Yes Pyrobaculum aerophilum str. IM2   1 1
No Yes Pyrobaculum islandicum DSM 4184   1 1
No Yes Thermoproteus uzoniensis 768-20   1 1
No Yes Methanocella conradii HZ254   1 1
No Yes Thermococcus barophilus MP   1 1
No Yes Pyrococcus sp. ST04   1 1
No Yes Pyrococcus furiosus COM1   1 1
No Yes Natrialba magadii ATCC 43099   1 1
No Yes Methanococcus vannielii SB   1 1
No Yes Methanobrevibacter ruminantium M1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 2 2
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 2 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 2
No Yes Schizosaccharomyces pombe 972h-   1 1
No Yes Batrachochytrium dendrobatidis JEL423   3 3
No Yes Batrachochytrium dendrobatidis JAM81   5 5
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 4 4
No Yes Neospora caninum Nc-Liverpool 6.2   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   2 2
No Yes Chamaesiphon minutus PCC 6605   2 2
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Dactylococcopsis salina PCC 8305   6 6
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Prochlorococcus marinus str. NATL1A   1 1
No Yes Crinalium epipsammum PCC 9333   2 2
No Yes Oscillatoria nigro-viridis PCC 7112   5 5
No Yes Oscillatoria acuminata PCC 6304   4 4
No Yes Arthrospira platensis NIES-39   3 3
No Yes Cyanothece sp. PCC 7822   3 3
No Yes Cyanothece sp. PCC 7424   3 3
No Yes Cyanothece sp. ATCC 51142   3 3
No Yes Cyanothece sp. PCC 8801   4 4
No Yes Cyanobacterium aponinum PCC 10605   2 2
No Yes Cyanobacterium stanieri PCC 7202   3 3
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Stanieria cyanosphaera PCC 7437   6 6
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   3 3
No Yes Mesoplasma florum W37   2 2
No Yes Spiroplasma chrysopicola DF-1   1 1
No Yes Mycoplasma leachii PG50   1 1
No Yes Mycoplasma mycoides subsp. mycoides SC str. Gladysdale   1 1
No Yes Mycoplasma mycoides subsp. mycoides SC str. PG1   1 1
No Yes Mycoplasma suis str. Illinois   1 1
No Yes Mycoplasma haemofelis str. Langford 1   2 2
No Yes Mycoplasma bovis Hubei-1   2 2
No Yes Mycoplasma bovis PG45   1 1
No Yes Mycoplasma agalactiae   2 2
No Yes Adlercreutzia equolifaciens DSM 19450   1 1
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium diphtheriae BH8   1 1
No Yes Leifsonia xyli subsp. cynodontis DSM 46306   1 1
No Yes Gardnerella vaginalis ATCC 14019   1 1
No Yes Bifidobacterium longum NCC2705   1 1
No Yes Bifidobacterium longum DJO10A   1 1
No Yes Bifidobacterium longum subsp. longum KACC 91563   1 1
No Yes Bifidobacterium animalis subsp. lactis Bl12   1 1
No Yes Bifidobacterium animalis subsp. lactis B420   1 1
No Yes Bifidobacterium animalis subsp. lactis BLC1   1 1
No Yes Bifidobacterium animalis subsp. lactis CNCM I-2494   1 1
No Yes Bifidobacterium animalis subsp. lactis Bi-07   1 1
No Yes Bifidobacterium animalis subsp. lactis V9   1 1
No Yes Bifidobacterium animalis subsp. lactis DSM 10140   1 1
No Yes Bifidobacterium animalis subsp. lactis BB-12   1 1
No Yes Bifidobacterium animalis subsp. lactis AD011   1 1
No Yes Bifidobacterium bifidum PRL2010   1 1
No Yes [Eubacterium] cylindroides [Eubacterium] cylindroides T2-87   1 1
No Yes Ruminococcus champanellensis 18P13   2 2
No Yes Clostridium acidurici 9a   1 1
No Yes Desulfosporosinus meridiei DSM 13257   1 1
No Yes Candidatus Arthromitus sp. SFB-mouse-Yit   1 1
No Yes Clostridium kluyveri NBRC 12016   1 1
No Yes Clostridium botulinum BKT015925   2 2
No Yes Clostridium botulinum F str. Langeland   1 1
No Yes Clostridium botulinum B1 str. Okra   2 2
No Yes Clostridium botulinum A str. Hall   3 3
No Yes Clostridium botulinum A str. ATCC 19397   2 2
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Enterococcus mundtii QU 25   3 3
No Yes Enterococcus faecium Aus0085   2 2
No Yes Enterococcus faecium DO   1 1
No Yes Enterococcus faecalis D32   1 1
No Yes Enterococcus faecalis OG1RF   1 1
No Yes Enterococcus faecalis V583   1 1
No Yes Lactobacillus amylovorus GRL 1112   1 1
No Yes Lactobacillus plantarum subsp. plantarum P-8   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ND02   1 1
No Yes Lactococcus lactis subsp. lactis KF147   2 2
No Yes Lactococcus lactis subsp. cremoris UC509.9   1 1
No Yes Streptococcus constellatus subsp. pharyngis C1050   2 2
No Yes Streptococcus constellatus subsp. pharyngis C818   1 1
No Yes Streptococcus constellatus subsp. pharyngis C232   1 1
No Yes Streptococcus intermedius C270   1 1
No Yes Streptococcus anginosus C238   2 2
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC 43143   1 1
No Yes Streptococcus lutetiensis 033   3 3
No Yes Streptococcus equi subsp. zooepidemicus ATCC 35246   1 1
No Yes Streptococcus equi subsp. zooepidemicus   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis AC-2713   2 2
No Yes Streptococcus dysgalactiae subsp. equisimilis ATCC 12394   1 1
No Yes Streptococcus iniae SF1   1 1
No Yes Streptococcus parasanguinis FW213   1 1
No Yes Streptococcus pyogenes MGAS10394   1 1
No Yes Streptococcus pneumoniae ST556   1 1
No Yes Streptococcus pneumoniae gamPNI0373   1 1
No Yes Streptococcus pneumoniae AP200   1 1
No Yes Streptococcus pneumoniae ATCC 700669   3 3
No Yes Streptococcus pneumoniae CGSP14   1 1
No Yes Streptococcus pneumoniae G54   1 1
No Yes Streptococcus pneumoniae 70585   1 1
No Yes Streptococcus pneumoniae Hungary19A-6   2 2
No Yes Streptococcus pneumoniae TIGR4   1 1
No Yes Streptococcus agalactiae 09mas018883   1 1
No Yes Streptococcus agalactiae NEM316   1 1
No Yes Streptococcus agalactiae 2603V/R   2 2
No Yes Streptococcus thermophilus JIM 8232   1 1
No Yes Streptococcus suis T15   3 3
No Yes Streptococcus suis SC070731   2 2
No Yes Streptococcus suis D9   1 1
No Yes Streptococcus suis SS12   1 1
No Yes Streptococcus suis D12   3 3
No Yes Streptococcus suis JS14   2 2
No Yes Streptococcus suis BM407   2 2
No Yes Streptococcus suis SC84   1 1
No Yes Streptococcus suis 98HAH33   1 1
No Yes Streptococcus suis 05ZYH33   1 1
No Yes Thermobacillus composti KWC4   1 1
No Yes Paenibacillus larvae subsp. larvae DSM 25430   1 1
No Yes Paenibacillus polymyxa E681   1 1
No Yes Listeria monocytogenes M7   2 2
No Yes Listeria monocytogenes J1-220   1 1
No Yes Listeria monocytogenes SLCC2376   1 1
No Yes Listeria monocytogenes L99   3 3
No Yes Listeria monocytogenes HCC23   2 2
No Yes Amphibacillus xylanus NBRC 15112   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036   1 1
No Yes Bacillus amyloliquefaciens XH7   1 1
No Yes Bacillus amyloliquefaciens LL3   1 1
No Yes Bacillus amyloliquefaciens TA208   1 1
No Yes Bacillus amyloliquefaciens DSM 7   1 1
No Yes Bacillus subtilis QB928   1 1
No Yes Bacillus subtilis BSn5   1 1
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   1 1
No Yes Bacillus infantis NRRL B-14911   1 1
No Yes Bacillus thuringiensis HD-771   2 2
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus G9842   4 4
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Staphylococcus aureus 08BA02176   1 1
No Yes Staphylococcus aureus RF122   1 1
No Yes Staphylococcus aureus subsp. aureus 71193   1 1
No Yes Staphylococcus aureus subsp. aureus S0385   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Nonlabens dokdonensis DSW-6   1 1
No Yes Psychroflexus torquis ATCC 700755   1 1
No Yes Brachyspira pilosicoli WesB   3 3
No Yes Borrelia burgdorferi N40   1 1
No Yes Treponema pedis str. T A4   1 1
No Yes Leptospirillum ferriphilum ML-04   1 1
No Yes Campylobacter jejuni subsp. jejuni 81116   1 1
No Yes Helicobacter cetorum MIT 99-5656   12 12
No Yes Helicobacter pylori BM012S   2 2
No Yes Helicobacter pylori BM012A   2 2
No Yes Helicobacter pylori SouthAfrica20   3 3
No Yes Helicobacter pylori UM298   2 2
No Yes Helicobacter pylori UM066   3 3
No Yes Helicobacter pylori UM037   3 3
No Yes Helicobacter pylori UM299   2 2
No Yes Helicobacter pylori UM032   1 1
No Yes Helicobacter pylori OK310   3 3
No Yes Helicobacter pylori OK113   1 1
No Yes Helicobacter pylori Rif2   2 2
No Yes Helicobacter pylori Rif1   2 2
No Yes Helicobacter pylori HUP-B14   5 5
No Yes Helicobacter pylori PeCan18   2 2
No Yes Helicobacter pylori Shi169   5 5
No Yes Helicobacter pylori Shi112   4 4
No Yes Helicobacter pylori Shi417   5 5
No Yes Helicobacter pylori XZ274   4 4
No Yes Helicobacter pylori Aklavik86   4 4
No Yes Helicobacter pylori Aklavik117   3 3
No Yes Helicobacter pylori SNT49   3 3
No Yes Helicobacter pylori Puno135   6 6
No Yes Helicobacter pylori Puno120   2 2
No Yes Helicobacter pylori ELS37   1 1
No Yes Helicobacter pylori Gambia94/24   2 2
No Yes Helicobacter pylori SouthAfrica7   3 3
No Yes Helicobacter pylori India7   4 4
No Yes Helicobacter pylori Lithuania75   2 2
No Yes Helicobacter pylori 2017   1 1
No Yes Helicobacter pylori 2018   1 1
No Yes Helicobacter pylori 908   1 1
No Yes Helicobacter pylori F57   4 4
No Yes Helicobacter pylori F30   4 4
No Yes Helicobacter pylori F16   1 1
No Yes Helicobacter pylori Sat464   5 5
No Yes Helicobacter pylori Cuz20   4 4
No Yes Helicobacter pylori PeCan4   2 2
No Yes Helicobacter pylori SJM180   4 4
No Yes Helicobacter pylori B8   4 4
No Yes Helicobacter pylori 52   5 5
No Yes Helicobacter pylori v225d   1 1
No Yes Helicobacter pylori 83   2 2
No Yes Helicobacter pylori 35A   3 3
No Yes Helicobacter pylori P12   2 2
No Yes Helicobacter pylori G27   2 2
No Yes Helicobacter pylori Shi470   4 4
No Yes Helicobacter pylori HPAG1   2 2
No Yes Helicobacter pylori 51   3 3
No Yes Helicobacter pylori F32   4 4
No Yes Helicobacter pylori J99   2 2
No Yes Helicobacter pylori 26695   2 2
No Yes Helicobacter pylori 26695   2 2
No Yes Lawsonia intracellularis N343   1 1
No Yes Desulfovibrio vulgaris RCH1   1 1
No Yes Desulfovibrio vulgaris str. Hildenborough   1 1
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Neisseria meningitidis WUE 2594   2 2
No Yes Neisseria meningitidis G2136   3 3
No Yes Neisseria meningitidis M04-240196   3 3
No Yes Neisseria meningitidis M01-240149   4 4
No Yes Neisseria meningitidis NZ-05/33   4 4
No Yes Neisseria meningitidis M01-240355   3 3
No Yes Neisseria meningitidis 8013   2 2
No Yes Neisseria meningitidis 053442   4 4
No Yes Neisseria meningitidis Z2491   3 3
No Yes Neisseria meningitidis H44/76   2 2
No Yes Neisseria meningitidis alpha710   3 3
No Yes Neisseria meningitidis MC58   3 3
No Yes Neisseria gonorrhoeae TCDC-NG08107   5 5
No Yes Neisseria gonorrhoeae FA 1090   5 5
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Taylorella asinigenitalis 14/45   2 2
No Yes Taylorella equigenitalis 14/56   3 3
No Yes Taylorella equigenitalis ATCC 35865   2 2
No Yes Caulobacter crescentus CB15   1 1
No Yes Octadecabacter arcticus 238   1 1
No Yes Rickettsia bellii RML369-C   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Candidatus Liberibacter americanus str. Sao Paulo   1 1
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Aggregatibacter actinomycetemcomitans ANH9381   1 1
No Yes Haemophilus somnus 2336   3 3
No Yes Haemophilus parasuis ZJ0906   3 3
No Yes Haemophilus influenzae F3047   2 2
No Yes Haemophilus influenzae F3031   1 1
No Yes Haemophilus influenzae PittGG   1 1
No Yes Haemophilus influenzae 86-028NP   1 1
No Yes Haemophilus influenzae R2846   1 1
No Yes Vibrio nigripulchritudo VibrioScope   2 2
No Yes Idiomarina loihiensis GSL 199   1 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Legionella pneumophila str. Paris   1 1
No Yes Legionella pneumophila str. Lens   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   1 1
No Yes Morganella morganii subsp. morganii KT   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis PA13   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Erwinia pyrifoliae DSM 12163   2 2
No Yes Erwinia amylovora CFBP1430   2 2
No Yes Cronobacter sakazakii CMCC 45402   2 2
No Yes Cronobacter sakazakii SP291   2 2
No Yes Cronobacter sakazakii ATCC BAA-894   1 1
No Yes Raoultella ornithinolytica B6   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Shigella flexneri 2002017   1 1
No Yes Shigella flexneri 2a str. 2457T   1 1
No Yes Shigella flexneri 2a str. 301   1 1
No Yes Shigella dysenteriae 1617   1 1
No Yes Shigella boydii Sb227   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   2 2
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   1 1
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   1 1
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   2 2
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   2 2
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   1 1
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   1 1
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   1 1
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   2 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   2 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   2 2
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   1 1
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   1 1
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae KCTC 2242   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli E24377A   1 1
No Yes Escherichia coli E. coli PMV-1   1 1
No Yes Escherichia coli JJ1886   1 1
No Yes Escherichia coli LY180   1 1
No Yes Escherichia coli APEC O78   1 1
No Yes Escherichia coli O7:K1 str. CE10   3 3
No Yes Escherichia coli O104:H4 str. 2009EL-2050   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2071   1 1
No Yes Escherichia coli O104:H4 str. 2011C-3493   1 1
No Yes Escherichia coli NA114   1 1
No Yes Escherichia coli P12b   1 1
No Yes Escherichia coli str. 'clone D i2'   1 1
No Yes Escherichia coli str. 'clone D i14'   1 1
No Yes Escherichia coli UM146   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli Xuzhou21   1 1
No Yes Escherichia coli IHE3034   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli KO11FL   2 2
No Yes Escherichia coli KO11FL   2 2
No Yes Escherichia coli LF82   1 1
No Yes Escherichia coli ED1a   1 1
No Yes Escherichia coli IAI39   2 2
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli 55989   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli IAI1   1 1
No Yes Escherichia coli W   2 2
No Yes Escherichia coli W   2 2
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli DH1   1 1
No Yes Escherichia coli ATCC 8739   1 1
No Yes Escherichia coli SMS-3-5   2 2
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli APEC O1   2 2
No Yes Escherichia coli O103:H2 str. 12009   1 1
No Yes Escherichia coli UTI89   1 1
No Yes Escherichia coli 536   3 3
No Yes Escherichia coli HS   1 1
No Yes Escherichia coli ETEC H10407   1 1
No Yes Escherichia coli O55:H7 str. RM12579   1 1
No Yes Escherichia coli O55:H7 str. CB9615   1 1
No Yes Escherichia coli O26:H11 str. 11368   1 1
No Yes Escherichia coli CFT073   1 1
No Yes Escherichia coli O111:H- str. 11128   2 2
No Yes Escherichia coli O127:H6 str. E2348/69   1 1
No Yes Escherichia coli O157:H7 str. TW14359   1 1
No Yes Escherichia coli O157:H7 str. EC4115   1 1
No Yes Escherichia coli O157:H7 str. Sakai   2 2
No Yes Escherichia coli O157:H7 str. EDL933   2 2
No Yes Escherichia coli str. K-12 substr. MDS42   1 1
No Yes Escherichia coli BW2952   1 1
No Yes Escherichia coli str. K-12 substr. MG1655   1 1
No Yes Escherichia coli str. K-12 substr. W3110   1 1
No Yes Escherichia coli str. K-12 substr. DH10B   1 1
No Yes Enterobacter cloacae SCF1   1 1
No Yes Enterobacter cloacae EcWSU1   1 1
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   1 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Acinetobacter baumannii ATCC 19606   1 1
No Yes Acinetobacter baumannii SDF   1 1
No Yes Methanomethylovorans hollandica DSM 15978   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Pyrococcus sp. NA2   1 1
No Yes Pyrococcus furiosus DSM 3638   1 1
No Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1   1 1
No Yes Natronobacterium gregoryi SP2   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 7 7
No Yes Homo sapiens (NCBI version) Human 1 1
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1 1
No Yes Heliconius numata (Incomplete)   2 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Malus x domestica (Duplicate) Apple 1 1
No Yes Ricinus communis (Early assembly) Castor bean 2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   2 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Homo sapiens 69_37 Human 1 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 1 1
No Yes Macaca mulatta 69_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 1 1
No Yes Otolemur garnettii 69_3 Small-eared galago 1 1
No Yes Microcebus murinus 69_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 1 1
No Yes Mus musculus 69_38 House mouse 1 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 2 2
No Yes Ochotona princeps 69 American pika 1 1
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 2 2
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 1 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 1 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 69_1 Large flying fox 1 1
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 1 1
No Yes Procavia capensis 69_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 69_5 Platypus 1 1
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 2
No Yes Anolis carolinensis 69_2.0 Green anole 1 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 1 1
No Yes Latimeria chalumnae 69_1 Coelacanth 1 1
No Yes Gadus morhua 69_1 Atlantic cod 1 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 2 2
No Yes Oryzias latipes 69_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 1 1
No Yes Danio rerio 69_9 Zebrafish 1 1
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes 1_050719N (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   2 2
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 3
No Yes Combined (meta-genome)   4 4
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   7 7
No Yes Dump bottom (Dump bottom) (meta-genome)   9 9
No Yes Dump top (Dump top) (meta-genome)   4 4
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   5 5
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   7 7
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   7 7
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   7 7
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   15 15
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   11 11
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Mouse Gut Community lean3 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   53161 53152
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes Protozoadb 2010_08 (Protozoadb)   8 8
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   3 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   401 401
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Termite Protist Endosymbiont Community (meta-genome)   4 4
No Yes Uniprot 2018_03 genome   9862 9858
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   412 412
No Yes NCBI plasmid sequences (Plasmids)   102 102
No Yes NCBI viral sequences (Viral)   24 24
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   64 64
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   168 168
No Yes TargetDB (Targets)   16 16
No Yes The Salmonella enterica Pan-genome (meta-genome)   39 39
No Yes UniProt viral sequences (Viral)   23 23

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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