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  Home > SCOP hierarchy > Domain combination - 48371,48371,_gap_,48371,_gap_

Domain combinations for 48371,48371,_gap_,48371,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48371 - ARM repeat
48371 - ARM repeat
48371 - ARM repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Pongo_abelii_76_2   (Sumatran orangutan)   0
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Papio_anubis_76   (Olive baboon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Cavia_porcellus_76_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Sus_scrofa_76_10.2   (Pig)   0
Bos_taurus_76_3.1   (Cattle)   0
Ovis_aries_76_3.1   (Sheep)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Equus_caballus_76_2   (Horse)   1
Myotis_lucifugus_76_2.0   (Little brown bat)   0
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Gallus_gallus_76_4   (Chicken)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Ciona_intestinalis_76   (Vase tunicate)   0
Adineta_vaga 0
Crassostrea_gigas_22   (Pacific oyster)   0
Helobdella_robusta_ 0
Lucilia_cuprina   (Australian sheep blowfly)   0
Drosophila_persimilis_1.3 0
Drosophila_suzukii 0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Trichoplax_adhaerens_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Mortierella_verticillata_NRRL_6337_ 1
Rhizopus_oryzae_RA_99-880_ 0
Rhizomucor_miehei_CAU432_ 0
Malassezia_globosa_CBS_7966_ 0
Ustilago_maydis_ 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 0
Sphaerobolus_stellatus_v1.0 0
Piloderma_croceum_F_1598_v1.0 0
Coniophora_puteana 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pleurotus_ostreatus_   (Oyster mushroom)   0
Galerina_marginata_v1.0 0
Schizophyllum_commune_ 0
Heterobasidion_annosum_ 0
Dichomitus_squalens 1
Trametes_versicolor_v1.0 0
Tremella_mesenterica_   (Witches' butter)   0
Trichoderma_virens_Gv29-8_ 0
Botrytis_cinerea_B05.10_ 0
Blumeria_graminis_22 0
Didymella_exigua_CBS_183.55_v1.0 0
Setosphaeria_turcica_v1.0 0
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Cochliobolus_lunatus_m118_v2.0 0
Mycosphaerella_graminicola_IPO323_ 0
Mycosphaerella_fijiensis_CIRAD86_ 0
Microsporum_canis_CBS_113480_ 0
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 0
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_carbonarius_ITEM_5010_ 0
Aspergillus_tubingensis_v1.0 0
Aspergillus_niger_22 0
Aspergillus_niger_ATCC_1015_ 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1
Pichia_pastoris_GS115_ 1
Lachancea_kluyveri_ 1
Zygosaccharomyces_rouxii_ 0
Schizosaccharomyces_pombe   (Fission yeast)   0
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_purpureum_ 0
Selaginella_moellendorffii_ 0
Eucalyptus_grandis_v201   (Rose gum)   0
Gossypium_raimondii_v221 0
Thellungiella_halophila_v173 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Aquilegia_coerulea_v195 0
Oryza_barthii_22   (African wild rice)   0
Oryza_glumaepatula_22 1
Oryza_punctata_22 1
Sorghum_bicolor_   (Sorghum)   1
Amborella_trichopoda_22 1
Micromonas_sp._RCC299_ 0
Porphyridium_purpureum_02_2012 0
Bigelowiella_natans_CCMP2755_22 0
Aureococcus_anophagefferens_ 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_irregulare_DAOM_BR486_22 0
Phytophthora_sojae_1.1 0
Phytophthora_infestans_T30-4_ 0
Phytophthora_capsici_ 0
Theileria_annulata 0
Plasmodium_chabaudi_ 0
Naegleria_gruberi_ 0
Guillardia_theta_CCMP2712_v1.0_ 0

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Strains
Genome     Number
Cryptococcus_neoformans_B-3501A_ 0
Histoplasma_capsulatum_H143 0
Candida_albicans_WO-1_ 0
Saccharomyces_cerevisiae_PW5 1
Saccharomyces_cerevisiae_T7 1
Schizosaccharomyces_pombe_972h-_ 0
Batrachochytrium_dendrobatidis_JEL423_ 0
Batrachochytrium_dendrobatidis_JAM81_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   0
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Mus_musculus_69_38   (House mouse)   0
Cavia_porcellus_69_3   (Domestic guinea pig)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Sus_scrofa_69_10.2   (Pig)   0
Bos_taurus_69_3.1   (Cattle)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Canis_familiaris_69_3.1   (Dog)   1
Equus_caballus_69_2   (Horse)   1
Myotis_lucifugus_69_2.0   (Little brown bat)   0
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Gallus_gallus_69_2   (Chicken)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Ciona_intestinalis_69   (Vase tunicate)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
NCBI_2017_08_genome 157
Protozoadb_2010_08_(Protozoadb) 0
STRING_v9.0.5_(STRING) 4
Uniprot_2018_03_genome 803

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.