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Domain combinations for 49785,49785,49785 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

49785 - Galactose-binding domain-like
49785 - Galactose-binding domain-like
49785 - Galactose-binding domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Ochotona_princeps_76   (American pika)   0
Tupaia_belangeri_76   (Northern tree shrew)   1
Vicugna_pacos_76_1   (Alpaca)   0
Pteropus_vampyrus_76_1   (Large flying fox)   0
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   1
Saccoglossus_kowalevskii_v3.0 3
Anas_platyrhynchos_76_1.0   (Mallard)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Xenopus_laevis_   (African clawed frog)   5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_76_1   (Coelacanth)   5
Lepisosteus_oculatus_76   (Spotted gar)   0
Takifugu_rubripes_76_4   (Torafugu)   1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   0
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   3
Astyanax_mexicanus_76   (Mexican tetra)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   2
Adineta_vaga 3
Octopus_bimaculoides_280 2
Crassostrea_gigas_22   (Pacific oyster)   1
Capitella_sp._I_ 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Strigamia_maritima_22 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Mnemiopsis_leidyi   (Sea walnut)   0
Acropora_digitifera_v1.0 10
Nematostella_vectensis_1.0   (Starlet sea anemone)   7
Hydra_vulgaris 0
Microbotryum_violaceum_22 0
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   0
Picea_abies   (Norway spruce)   0
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 1
Citrus_clementina_v165 0
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   0
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   0
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   0
Manihot_esculenta_v147   (Cassava)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 0
Physcomitrella_patens 0
Bigelowiella_natans_CCMP2755_22 0
Symbiodinium_minutum_clade_B1_v1.2 0
Emiliania_huxleyi_CCMP1516_ 1
Mycoplasma_crocodyli_MP145 0
Modestobacter_marinus 0
Catenulispora_acidiphila_DSM_44928 0
Streptomyces_coelicolor_A3(2) 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 0
Streptomyces_scabiei_87.22 0
Kribbella_flavida_DSM_17836 0
Actinoplanes_sp._SE50/110 0
Beutenbergia_cavernae_DSM_12333 0
Xylanimonas_cellulosilytica_DSM_15894 0
Cellulomonas_flavigena_DSM_20109 0
[Cellvibrio]_gilvus_ATCC_13127 0
Bifidobacterium_bifidum_S17 0
Herpetosiphon_aurantiacus_DSM_785 0
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 0
Chloroflexus_aurantiacus_J-10-fl 0
Clostridium_clariflavum_DSM_19732 0
Clostridium_cellulolyticum_H10 0
Clostridium_thermocellum_ATCC_27405 0
Clostridium_phytofermentans_ISDg 0
Clostridium_lentocellum_DSM_5427 0
Butyrivibrio_proteoclasticus_B316 0
Butyrivibrio_fibrisolvens 0
Clostridium_sp._BNL1100 0
Clostridium_perfringens_ATCC_13124 0
Clostridium_cellulovorans_743B 0
Caldicellulosiruptor_obsidiansis_OB47 0
Caldicellulosiruptor_kronotskyensis_2002 0
Caldicellulosiruptor_hydrothermalis_108 0
Caldicellulosiruptor_owensensis_OL 0
Caldicellulosiruptor_lactoaceticus_6A 0
Caldicellulosiruptor_kristjanssonii_177R1B 0
Caldicellulosiruptor_saccharolyticus_DSM_8903 0
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 0
Streptococcus_pneumoniae_P1031 0
Exiguobacterium_sp._MH3 0
Exiguobacterium_sp._AT1b 0
Paenibacillus_sp._JDR-2 0
Paenibacillus_mucilaginosus_3016 0
Halobacillus_halophilus_DSM_2266 0
Bacillus_pseudofirmus_OF4 0
Bacillus_cellulosilyticus_DSM_2522 0
Haliscomenobacter_hydrossis_DSM_1100 0
Chitinophaga_pinensis_DSM_2588 0
Dyadobacter_fermentans_DSM_18053 0
Runella_slithyformis_DSM_19594 0
Bacteroides_thetaiotaomicron_VPI-5482 0
Zunongwangia_profunda_SM-A87 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Coraliomargarita_akajimensis_DSM_45221 0
Treponema_succinifaciens_DSM_2489 0
Thermotoga_thermarum_DSM_5069 0
Dictyoglomus_turgidum_DSM_6724 0
Haliangium_ochraceum_DSM_14365 0
Stigmatella_aurantiaca_DW4/3-1 0
Myxococcus_fulvus_HW-1 0
Saccharophagus_degradans_2-40 0
Teredinibacter_turnerae_T7901 0
Shewanella_woodyi_ATCC_51908 0
Shewanella_amazonensis_SB2B 0
Pseudoalteromonas_sp._SM9913 0
Pseudoalteromonas_atlantica_T6c 0
Glaciecola_sp._4H-3-7+YE-5 0
Alteromonas_sp._SN2 0
Alteromonas_macleodii_str._'Deep_ecotype' 0
Methanosphaerula_palustris_E1-9c 0
Haloarcula_hispanica_ATCC_33960 0
Haloarcula_marismortui_ATCC_43049 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   8
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Actinoplanes_friuliensis_DSM_7358 0
Bifidobacterium_bifidum_PRL2010 0
Bifidobacterium_bifidum_BGN4 0
Chthonomonas_calidirosea_T49 0
Clostridium_thermocellum_DSM_1313 0
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_perfringens_SM101 0
Clostridium_perfringens_str._13 0
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 0
Streptococcus_pneumoniae_A026 0
Streptococcus_pneumoniae_SPNA45 0
Streptococcus_pneumoniae_SPN034156 0
Streptococcus_pneumoniae_INV104 0
Streptococcus_pneumoniae_INV200 0
Streptococcus_pneumoniae_gamPNI0373 0
Streptococcus_pneumoniae_AP200 0
Streptococcus_pneumoniae_ATCC_700669 0
Streptococcus_pneumoniae_TCH8431/19A 0
Streptococcus_pneumoniae_JJA 0
Streptococcus_pneumoniae_Hungary19A-6 0
Streptococcus_pneumoniae_Taiwan19F-14 0
Streptococcus_pneumoniae_D39 0
Streptococcus_pneumoniae_R6 0
Streptococcus_pneumoniae_TIGR4 0
Thermobacillus_composti_KWC4 0
Paenibacillus_sp._Y412MC10 0
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Amphibacillus_xylanus_NBRC_15112 0
Prevotella_dentalis_DSM_3688 0
Bacteroides_xylanisolvens_XB1A 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 0
Sorangium_cellulosum_So0157-2 0
Simiduia_agarivorans_SA1_=_DSM_21679 0
Vibrio_nigripulchritudo_VibrioScope 0
Alteromonas_macleodii_str._'Ionian_Sea_U8' 0
Alteromonas_macleodii_str._'Ionian_Sea_U7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U4' 0
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 0
Alteromonas_macleodii_str._'English_Channel_673' 0
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 0
Alteromonas_macleodii_str._'Black_Sea_11' 0
Alteromonas_macleodii_ATCC_27126 0
Haloarcula_hispanica_N601 0

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Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Ochotona_princeps_69   (American pika)   0
Tupaia_belangeri_69   (Northern tree shrew)   1
Vicugna_pacos_69_1   (Alpaca)   0
Felis_catus_69   (Domestic cat)   0
Pteropus_vampyrus_69_1   (Large flying fox)   0
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_69_1   (Coelacanth)   5
Takifugu_rubripes_69_4   (Torafugu)   1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3
Caenorhabditis_elegans_69_215   (Roundworm)   0
Arabidopsis_thaliana_10   (Thale cress)   0

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Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   0
Ricinus_communis__(Early_assembly)   (Castor bean)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
NCBI_plasmid_sequences_(Plasmids) 0
NCBI_viral_sequences_(Viral) 0
STRING_v9.0.5_(STRING) 35
Uniprot_2018_03_genome 294
TargetDB__(Targets) 0
NCBI_2017_08_genome 122

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.