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  Home > SCOP hierarchy > Domain combination - 50729

Domain combinations for 50729 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50729 - PH domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   175
Pan_troglodytes_76_2.1.4   (Chimpanzee)   5
Gorilla_gorilla_76_3.1   (Western gorilla)   7
Pongo_abelii_76_2   (Sumatran orangutan)   5
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3
Papio_anubis_76   (Olive baboon)   6
Macaca_mulatta_76_1   (Rhesus monkey)   15
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   15
Otolemur_garnettii_76_3   (Small-eared galago)   5
Microcebus_murinus_76_1   (Gray mouse lemur)   3
Rattus_norvegicus_76_5.0   (Norway rat)   5
Mus_musculus_76_38   (House mouse)   55
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   6
Cavia_porcellus_76_3   (Domestic guinea pig)   3
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   3
Tupaia_belangeri_76   (Northern tree shrew)   3
Sus_scrofa_76_10.2   (Pig)   24
Bos_taurus_76_3.1   (Cattle)   6
Ovis_aries_76_3.1   (Sheep)   3
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2
Ailuropoda_melanoleuca_76_1   (Giant panda)   5
Canis_familiaris_76_3.1   (Dog)   2
Felis_catus_76_6.2   (Domestic cat)   4
Equus_caballus_76_2   (Horse)   7
Myotis_lucifugus_76_2.0   (Little brown bat)   3
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   3
Erinaceus_europaeus_76   (Western European hedgehog)   1
Procavia_capensis_76_1   (Cape rock hyrax)   3
Loxodonta_africana_76_3   (African savanna elephant)   7
Echinops_telfairi_76   (Small Madagascar hedgehog)   5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   9
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   8
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   9
Ornithorhynchus_anatinus_76_5   (Platypus)   43
Saccoglossus_kowalevskii_v3.0 12
Petromyzon_marinus_76_7.0   (Sea lamprey)   18
Meleagris_gallopavo_76_2   (Turkey)   8
Gallus_gallus_76_4   (Chicken)   5
Anas_platyrhynchos_76_1.0   (Mallard)   20
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   11
Ficedula_albicollis_76_1.0   (Collared flycatcher)   15
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_76_2.0   (Green anole)   10
Xenopus_laevis_   (African clawed frog)   13
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   4
Latimeria_chalumnae_76_1   (Coelacanth)   9
Lepisosteus_oculatus_76   (Spotted gar)   6
Gadus_morhua_76_1   (Atlantic cod)   18
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   10
Takifugu_rubripes_76_4   (Torafugu)   8
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   12
Oryzias_latipes_76_1   (Japanese medaka)   9
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   9
Poecilia_formosa_76   (Amazon molly)   8
Oreochromis_niloticus_76_1.0   (Nile tilapia)   4
Astyanax_mexicanus_76   (Mexican tetra)   22
Danio_rerio_76_9   (Zebrafish)   30
Oikopleura_dioica 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_76   (Vase tunicate)   5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   18
Adineta_vaga 9
Octopus_bimaculoides_280 28
Crassostrea_gigas_22   (Pacific oyster)   9
Lottia_gigantea_   (Owl limpet)   20
Helobdella_robusta_ 27
Capitella_sp._I_ 22
Danaus_plexippus_OGS1.0   (Monarch butterfly)   11
Heliconius_melpomene_   (Postman butterfly)   3
Bombyx_mori_   (Domestic silkworm)   26
Nasonia_vitripennis_   (Jewel wasp)   0
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   21
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2
Linepithema_humile_v1.1   (Argentine ant)   7
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   10
Solenopsis_invicta_v.2.2.3   (Red fire ant)   11
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 1
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 4
Drosophila_suzukii 3
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 5
Drosophila_sechellia_1.3 4
Drosophila_melanogaster_76_5   (Fruit fly)   1
Drosophila_erecta_1.3 0
Drosophila_ananassae_1.3 0
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Megaselia_scalaris_22 6
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   8
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   2
Tribolium_castaneum_3.0   (Red flour beetle)   3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2
Acyrthosiphon_pisum_   (Pea aphid)   4
Rhodnius_prolixus_22 7
Daphnia_pulex_   (Common water flea)   11
Strigamia_maritima_22 6
Sarcoptes_scabiei 8
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   6
Pristionchus_pacificus_ 10
Meloidogyne_incognita_   (Southern root-knot nematode)   7
Meloidogyne_hapla_ 7
Onchocerca_volvulus_22 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   9
Caenorhabditis_japonica_ 6
Caenorhabditis_brenneri_ 5
Caenorhabditis_remanei_ 3
Caenorhabditis_elegans_76_235   (Roundworm)   5
Caenorhabditis_briggsae_2 4
Trichinella_spiralis_22 6
Hymenolepis_microstoma_ 1
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   3
Schistosoma_mansoni_ 6
Mnemiopsis_leidyi   (Sea walnut)   2
Thelohanellus_kitauei 4
Acropora_digitifera_v1.0 23
Nematostella_vectensis_1.0   (Starlet sea anemone)   23
Hydra_vulgaris 5
Amphimedon_queenslandica 17
Trichoplax_adhaerens_ 9
Proterospongia_sp._ATCC_50818_ 5
Monosiga_brevicollis_ 4
Sphaeroforma_arctica_JP610_ 16
Capsaspora_owczarzaki_ATCC_30864_ 1
Conidiobolus_coronatus_NRRL28638_v1.0 1
Mortierella_verticillata_NRRL_6337_ 1
Phycomyces_blakesleeanus_ 3
Rhizopus_oryzae_RA_99-880_ 4
Mucor_circinelloides_ 6
Rhizomucor_miehei_CAU432_ 2
Malassezia_globosa_CBS_7966_ 4
Sporisorium_reilianum_22 2
Ustilago_maydis_ 2
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Melampsora_laricis-populina_ 0
Rhodotorula_graminis_WP1_v1.0 2
Sporobolomyces_roseus_IAM_13481_ 1
Microbotryum_violaceum_22 0
Wallemia_sebi_v1.0 0
Sphaerobolus_stellatus_v1.0 2
Piloderma_croceum_F_1598_v1.0 1
Serpula_lacrymans_var._lacrymans_S7.9_ 3
Coniophora_puteana 2
Hydnomerulius_pinastri_v2.0 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 3
Pisolithus_microcarpus_441_v1.0 4
Pisolithus_tinctorius_Marx_270_v1.0 2
Scleroderma_citrinum_Foug_A_v1.0 5
Coprinopsis_cinerea_okayama7_130_v3 0
Pleurotus_ostreatus_   (Oyster mushroom)   1
Amanita_thiersii_Skay4041_v1.0 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3
Galerina_marginata_v1.0 3
Hebeloma_cylindrosporum_h7_v2.0 3
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 2
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 1
Punctularia_strigosozonata_v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 2
Fomitiporia_mediterranea_v1.0 2
Tulasnella_calospora_AL13/4D_v1.0 4
Postia_placenta_ 2
Wolfiporia_cocos_MD-104_SS10__v1.0 2
Fomitopsis_pinicolav1.0 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1
Phanerochaete_chrysosporium_RP-78_2.1 3
Dichomitus_squalens 1
Trametes_versicolor_v1.0 1
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 0
Apiospora_montagnei_NRRL_25634_v1.0 0
Magnaporthe_poae_ATCC_64411_22 1
Magnaporthe_grisea_70-15_ 0
Podospora_anserina_ 0
Sporotrichum_thermophile_ATCC_42464_ 0
Thielavia_terrestris_NRRL_8126_ 0
Chaetomium_globosum_CBS_148.51_ 0
Neurospora_tetrasperma_ 0
Neurospora_discreta_FGSC_8579_ 0
Neurospora_crassa_OR74A_ 0
Cryphonectria_parasitica_   (Chestnut blight fungus)   0
Verticillium_albo-atrum_VaMs.102_ 1
Verticillium_dahliae_VdLs.17_ 0
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 0
Fusarium_graminearum_ 0
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1
Fusarium_verticillioides_7600_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 0
Trichoderma_citrinoviride_v1.0 1
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 0
Trichoderma_longibrachiatum_ATCC_18648_v1.0 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 0
Sclerotinia_sclerotiorum_ 1
Blumeria_graminis_22 0
Didymella_exigua_CBS_183.55_v1.0 0
Leptosphaeria_maculans_22 0
Setosphaeria_turcica_v1.0 0
Cochliobolus_miyabeanus_ATCC_44560_v1.0 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   0
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Pyrenophora_tritici-repentis_ 0
Stagonospora_nodorum_ 1
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 1
Dothistroma_septosporum 0
Septoria_musiva_v1.0 1
Mycosphaerella_fijiensis_CIRAD86_ 0
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Paracoccidioides_brasiliensis_Pb18_ 0
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Ajellomyces_dermatitidis_SLH14081_ 0
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 0
Microsporum_canis_CBS_113480_ 0
Trichophyton_equinum_CBS_127.97_ 0
Trichophyton_verrucosum_HKI_0517_ 0
Arthroderma_benhamiae_CBS_112371_ 0
Trichophyton_tonsurans_CBS_112818_ 0
Trichophyton_rubrum_CBS_118892_ 0
Uncinocarpus_reesii_1704_ 0
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 0
Aspergillus_fumigatus_Af293 0
Aspergillus_brasiliensis_v1.0 0
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_glaucus 0
Aspergillus_carbonarius_ITEM_5010_ 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_terreus_NIH2624_ 0
Aspergillus_tubingensis_v1.0 0
Aspergillus_wentii_v1.0 0
Aspergillus_oryzae_RIB40_ 0
Aspergillus_niger_22 0
Aspergillus_niger_ATCC_1015_ 1
Aspergillus_flavus_NRRL3357_ 0
Aspergillus_clavatus_NRRL_1_ 0
Penicillium_marneffei_ATCC_18224_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Hansenula_polymorpha_v2.0 3
Dekkera_bruxellensis_CBS_2499_v2.0 3
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 2
Candida_parapsilosis_ 2
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2
Pichia_stipitis_CBS_6054_ 2
Candida_guilliermondii_ATCC_6260_ 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 2
Debaromyces_hansenii 2
Wickerhamomyces_anomalus 3
Pichia_pastoris_GS115_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 4
Yarrowia_lipolytica_CLIB122 0
Candida_lusitaniae_ATCC_42720_ 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2
Vanderwaltozyma_polyspora_DSM_70294_ 1
Candida_glabrata_CBS138 1
Kluyveromyces_thermotolerans_CBS_6340 1
Lachancea_kluyveri_ 1
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 0
Saccharomyces_mikatae_MIT 0
Saccharomyces_paradoxus_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Saccharomyces_bayanus_MIT 1
Kluyveromyces_lactis 1
Schizosaccharomyces_cryophilus_OY26_22 2
Schizosaccharomyces_octosporus_yFS286_ 2
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   2
Catenaria_anguillulae_PL171_v1.0 3
Allomyces_macrogynus_ATCC_38327_ 1
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Entamoeba_dispar_1.2 3
Entamoeba_invadens_1.2 2
Entamoeba_histolytica_1 3
Selaginella_moellendorffii_ 3
Pinus_taeda   (Loblolly pine)   2
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3
Gossypium_raimondii_v221 12
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   8
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   4
Capsella_rubella_v183 2
Arabidopsis_lyrata_   (Lyrate rockcress)   4
Arabidopsis_thaliana_10   (Thale cress)   4
Carica_papaya_   (Papaya)   6
Medicago_truncatula_   (Barrel medic)   2
Phaseolus_vulgaris_v186   (French bean)   2
Glycine_max_v109   (Soybean)   5
Cucumis_sativus_v122   (Cucumber)   0
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   4
Prunus_persica_v139   (Peach)   2
Linum_usitatissimum_v200   (Flax)   0
Manihot_esculenta_v147   (Cassava)   5
Populus_trichocarpa_v156   (Black cottonwood)   2
Vitis_vinifera_   (Wine grape)   2
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   3
Solanum_tuberosum_   (Potato)   4
Actinidia_chinensis_Hongyang_ 3
Aquilegia_coerulea_v195 2
Triticum_urartu_22 4
Triticum_aestivum_22   (Bread wheat)   10
Aegilops_tauschii_22 1
Brachypodium_distachyon_   (Stiff brome)   4
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   2
Oryza_punctata_22 0
Oryza_nivara_22 2
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   7
Panicum_virgatum_v202   (Switchgrass)   2
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   8
Zea_mays_v181   (Maize)   9
Sorghum_bicolor_   (Sorghum)   1
Musa_balbisiana   (Balbis banana)   3
Musa_acuminata_22   (Wild Malaysian banana)   3
Amborella_trichopoda_22 0
Physcomitrella_patens 3
Coccomyxa_subellipsoidea_sp._C-169_v2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 0
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 3
Ostreococcus_sp._RCC809_ 4
Ostreococcus_lucimarinus_CCE9901_ 4
Ostreococcus_tauri_ 3
Bathycoccus_prasinos_ 1
Micromonas_sp._RCC299_ 1
Micromonas_pusilla_CCMP1545_v3.0 1
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 0
Bigelowiella_natans_CCMP2755_22 6
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 11
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2
Trypanosoma_vivax_ 1
Trypanosoma_cruzi_strain_CL_Brener 1
Trypanosoma_congolense_2.4 3
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 1
Ectocarpus_siliculosus 3
Aureococcus_anophagefferens_ 3
Albugo_laibachii_22 3
Pythium_iwayamai_DAOM_BR242034_22 13
Pythium_arrhenomanes_ATCC_12531_22 8
Pythium_ultimum_v1.7-2 19
Pythium_aphanidermatum_DAOM_BR444_22 12
Pythium_irregulare_DAOM_BR486_22 12
Pythium_vexans_DAOM_BR484_22 11
Phytophthora_ramorum_1.1   (Sudden oak death agent)   6
Phytophthora_sojae_1.1 7
Phytophthora_infestans_T30-4_ 15
Phytophthora_capsici_ 15
Hyaloperonospora_arabidopsidis_22 4
Phaeodactylum_tricornutumCCAP_1055/1 3
Fragilariopsis_cylindrus 7
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 6
Paramecium_tetraurelia_ 6
Tetrahymena_thermophila_SB210_1_ 4
Ichthyophthirius_multifiliis_strain_G5_ 2
Cryptosporidium_hominis 3
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 3
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 0
Theileria_annulata 1
Plasmodium_falciparum_3D7_ 3
Plasmodium_vivax_SaI-1_7.0 2
Plasmodium_knowlesi_strain_H_ 2
Plasmodium_yoelii_ssp._yoelii_1_ 2
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 7
Naegleria_gruberi_ 4
Trichomonas_vaginalis_ 10
Guillardia_theta_CCMP2712_v1.0_ 9
Emiliania_huxleyi_CCMP1516_ 7
Thermobaculum_terrenum_ATCC_BAA-798 1
Acaryochloris_marina_MBIC11017 0
Synechocystis_sp._PCC_6803 0
Synechococcus_sp._CC9311 0
Synechococcus_elongatus_PCC_7942 1
Microcoleus_sp._PCC_7113 0
Microcystis_aeruginosa_NIES-843 0
Rivularia_sp._PCC_7116 1
Nostoc_sp._PCC_7120 0
Anabaena_sp._90 0
Mycoplasma_suis_KI3806 0
Mycoplasma_penetrans_HF-2 0
Mycoplasma_pulmonis_UAB_CTIP 0
Eggerthella_lenta_DSM_2243 0
Slackia_heliotrinireducens_DSM_20476 1
Olsenella_uli_DSM_7084 0
Nakamurella_multipartita_DSM_44233 0
Geodermatophilus_obscurus_DSM_43160 1
Stackebrandtia_nassauensis_DSM_44728 1
Frankia_sp._EAN1pec 0
Streptosporangium_roseum_DSM_43021 1
Streptomyces_coelicolor_A3(2) 1
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 0
Streptomyces_avermitilis_MA-4680 0
Streptomyces_scabiei_87.22 1
Actinosynnema_mirum_DSM_43827 1
Saccharomonospora_viridis_DSM_43017 1
Saccharopolyspora_erythraea_NRRL_2338 1
Microlunatus_phosphovorus_NM-1 1
Salinispora_arenicola_CNS-205 1
Salinispora_tropica_CNB-440 1
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 2
Gordonia_sp._KTR9 0
Rhodococcus_jostii_RHA1 2
Rhodococcus_opacus_B4 2
Nocardia_cyriacigeorgica_GUH-2 1
Nocardia_farcinica_IFM_10152 1
Corynebacterium_resistens_DSM_45100 1
Corynebacterium_jeikeium_K411 1
Corynebacterium_glutamicum_R 1
Corynebacterium_diphtheriae_NCTC_13129 1
Kytococcus_sedentarius_DSM_20547 1
Jonesia_denitrificans_DSM_20603 1
Intrasporangium_calvum_DSM_43043 1
Cellulomonas_fimi_ATCC_484 1
Arthrobacter_arilaitensis_Re117 1
Kocuria_rhizophila_DC2201 1
Arthrobacter_sp._Rue61a 1
Arthrobacter_sp._FB24 1
Mobiluncus_curtisii_ATCC_43063 1
Dehalococcoides_ethenogenes_195 1
Dehalococcoides_sp._BAV1 1
Herpetosiphon_aurantiacus_DSM_785 1
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Anaerococcus_prevotii_DSM_20548 1
Finegoldia_magna_ATCC_29328 0
Megamonas_hypermegale 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 0
Clostridium_clariflavum_DSM_19732 2
Clostridium_cellulolyticum_H10 1
Clostridium_thermocellum_ATCC_27405 0
Faecalibacterium_prausnitzii 1
Thermaerobacter_marianensis_DSM_12885 1
Desulfitobacterium_hafniense_Y51 1
Desulfitobacterium_dehalogenans_ATCC_51507 1
Desulfotomaculum_ruminis_DSM_2154 0
Acetobacterium_woodii_DSM_1030 2
Clostridium_saccharolyticum_WM1 1
Clostridium_lentocellum_DSM_5427 1
[Ruminococcus]_obeum 0
Eubacterium_rectale_ATCC_33656 0
Roseburia_intestinalis 0
Candidatus_Arthromitus_sp._SFB-mouse-Japan 1
Clostridium_sp._BNL1100 1
Clostridium_kluyveri_DSM_555 1
Clostridium_tetani_E88 0
Clostridium_cellulovorans_743B 2
Clostridium_botulinum_A_str._ATCC_3502 1
Thermosediminibacter_oceani_DSM_16646 1
Caldicellulosiruptor_kronotskyensis_2002 0
Thermoanaerobacter_wiegelii_Rt8.B1 0
Acetohalobium_arabaticum_DSM_5501 1
Halanaerobium_hydrogeniformans 0
Halanaerobium_praevalens_DSM_2228 1
Carnobacterium_sp._17-4 2
Carnobacterium_sp._WN1359 2
Aerococcus_urinae_ACS-120-V-Col10a 0
Melissococcus_plutonius_DAT561 0
Enterococcus_sp._7L76 1
Enterococcus_faecalis_62 0
Weissella_koreensis_KACC_15510 1
Lactobacillus_johnsonii_FI9785 0
Lactobacillus_gasseri_ATCC_33323 0
Lactococcus_lactis_subsp._cremoris_MG1363 1
Streptococcus_sp._I-P16 1
Streptococcus_sp._I-G2 1
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 1
Streptococcus_uberis_0140J 1
Streptococcus_parasanguinis_ATCC_15912 1
Streptococcus_agalactiae_A909 1
Streptococcus_mutans_NN2025 0
Streptococcus_thermophilus_LMD-9 1
Streptococcus_suis_P1/7 1
Streptococcus_sanguinis_SK36 1
Streptococcus_salivarius_57.I 1
Streptococcus_oralis_Uo5 0
Streptococcus_gordonii_str._Challis_substr._CH1 1
Exiguobacterium_sp._MH3 1
Exiguobacterium_sp._AT1b 2
Exiguobacterium_sibiricum_255-15 2
Brevibacillus_brevis_NBRC_100599 2
Paenibacillus_sp._JDR-2 1
Paenibacillus_mucilaginosus_3016 2
Paenibacillus_polymyxa_M1 0
Listeria_welshimeri_serovar_6b_str._SLCC5334 0
Listeria_innocua_Clip11262 1
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 1
Listeria_ivanovii_subsp._ivanovii_PAM_55 1
Solibacillus_silvestris_StLB046 2
Lysinibacillus_sphaericus_C3-41 1
Oceanobacillus_iheyensis_HTE831 1
Geobacillus_thermoleovorans_CCB_US3_UF5 0
Geobacillus_kaustophilus_HTA426 1
Geobacillus_sp._GHH01 1
Geobacillus_sp._WCH70 1
Geobacillus_thermodenitrificans_NG80-2 1
Halobacillus_halophilus_DSM_2266 1
Bacillus_sp._JS 2
Bacillus_sp._1NLA3E 1
Bacillus_amyloliquefaciens_FZB42 2
Bacillus_atrophaeus_1942 2
Bacillus_subtilis_subsp._subtilis_str._168 3
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_halodurans_C-125 1
Bacillus_weihenstephanensis_KBAB4 2
Bacillus_thuringiensis_str._Al_Hakam 2
Bacillus_cereus_03BB102 2
Bacillus_anthracis_str._A0248 2
Bacillus_pseudofirmus_OF4 1
Bacillus_pumilus_SAFR-032 1
Bacillus_megaterium_DSM_319 2
Staphylococcus_aureus_subsp._aureus_JH1 0
Ignavibacterium_album_JCM_16511 0
Chitinophaga_pinensis_DSM_2588 1
Flexibacter_litoralis_DSM_6794 0
Belliella_baltica_DSM_15883 0
Cyclobacterium_marinum_DSM_745 1
Marivirga_tractuosa_DSM_4126 1
Tannerella_forsythia_ATCC_43037 0
Porphyromonas_asaccharolytica_DSM_20707 0
Pedobacter_saltans_DSM_12145 0
Solitalea_canadensis_DSM_3403 0
Pedobacter_heparinus_DSM_2366 0
Owenweeksia_hongkongensis_DSM_17368 1
Zunongwangia_profunda_SM-A87 1
Gramella_forsetii_KT0803 1
Aequorivita_sublithincola_DSM_14238 1
Cellulophaga_algicola_DSM_14237 1
Cellulophaga_lytica_DSM_7489 1
Polaribacter_sp._MED152 1
Weeksella_virosa_DSM_16922 1
Flavobacterium_indicum_GPTSA100-9 0
Flavobacterium_psychrophilum_JIP02/86 1
Flavobacterium_branchiophilum_FL-15 1
Flavobacterium_columnare_ATCC_49512 0
Flavobacterium_johnsoniae_UW101 1
Candidatus_Protochlamydia_amoebophila_UWE25 0
Chlamydophila_pneumoniae_TW-183 0
Chlamydophila_caviae_GPIC 0
Chlamydophila_felis_Fe/C-56 0
Chlamydia_psittaci_01DC11 0
Phycisphaera_mikurensis_NBRC_102666 0
Methylacidiphilum_infernorum_V4 0
Thermanaerovibrio_acidaminovorans_DSM_6589 0
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Calditerrivibrio_nitroreducens_DSM_19672 0
Marinitoga_piezophila_KA3 0
Petrotoga_mobilis_SJ95 0
Thermotoga_sp._RQ2 0
Thermotoga_naphthophila_RKU-10 0
Thermotoga_petrophila_RKU-1 0
Thermotoga_neapolitana_DSM_4359 0
Thermotoga_maritima_MSB8 0
Hydrogenobaculum_sp._Y04AAS1 0
Dictyoglomus_thermophilum_H-6-12 0
Caldisericum_exile_AZM16c01 0
Thermodesulfovibrio_yellowstonii_DSM_11347 0
Sebaldella_termitidis_ATCC_33386 1
Leptotrichia_buccalis_C-1013-b 0
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 0
candidate_division_SR1_bacterium_RAAC1_SR1_1 0
Bacteriovorax_marinus_SJ 0
Nautilia_profundicola_AmH 0
Nitratifractor_salsuginis_DSM_16511 0
Campylobacter_jejuni_subsp._doylei_269.97 0
Sulfuricurvum_kujiense_DSM_16994 0
Syntrophus_aciditrophicus_SB 1
Desulfotalea_psychrophila_LSv54 1
Desulfovibrio_piezophilus 1
Desulfovibrio_salexigens_DSM_2638 1
Geobacter_metallireducens_GS-15 0
Pelobacter_propionicus_DSM_2379 1
Thiomonas_arsenitoxydans 0
Thiomonas_intermedia_K12 0
Ralstonia_pickettii_12D 0
Ramlibacter_tataouinensis_TTB310 1
Polaromonas_naphthalenivorans_CJ2 1
Acidovorax_citrulli_AAC00-1 0
Methylobacillus_flagellatus_KT 0
Sphingopyxis_alaskensis_RB2256 1
Gluconacetobacter_diazotrophicus_PAl_5 0
Wolbachia_sp._wRi 0
Methylobacterium_chloromethanicum_CM4 1
Methylobacterium_extorquens_AM1 1
Methylobacterium_sp._4-46 1
Methylobacterium_populi_BJ001 1
Methylobacterium_nodulans_ORS_2060 1
Methylobacterium_radiotolerans_JCM_2831 1
Rhizobium_etli_CIAT_652 0
Rhizobium_leguminosarum_bv._viciae_3841 0
Mesorhizobium_sp._BNC1 1
Saccharophagus_degradans_2-40 0
Teredinibacter_turnerae_T7901 0
Vibrio_sp._Ex25 1
Vibrio_harveyi_ATCC_BAA-1116 1
Vibrio_parahaemolyticus_RIMD_2210633 0
Vibrio_anguillarum_775 0
Photobacterium_profundum_SS9 1
Ferrimonas_balearica_DSM_9799 1
Shewanella_piezotolerans_WP3 1
Shewanella_loihica_PV-4 1
Shewanella_halifaxensis_HAW-EB4 1
Shewanella_sediminis_HAW-EB3 1
Shewanella_pealeana_ATCC_700345 1
Shewanella_oneidensis_MR-1 1
Shewanella_baltica_OS185 1
Shewanella_woodyi_ATCC_51908 1
Shewanella_sp._MR-4 1
Shewanella_amazonensis_SB2B 1
Shewanella_violacea_DSS12 1
Shewanella_putrefaciens_CN-32 0
Pseudoalteromonas_sp._SM9913 1
Pseudoalteromonas_atlantica_T6c 1
Pseudoalteromonas_haloplanktis_TAC125 1
Glaciecola_sp._4H-3-7+YE-5 1
Glaciecola_nitratireducens_FR1064 1
Alteromonas_sp._SN2 1
Alteromonas_macleodii_str._'Deep_ecotype' 1
Hahella_chejuensis_KCTC_2396 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Photorhabdus_asymbiotica 0
Photorhabdus_luminescens_subsp._laumondii_TTO1 0
Proteus_mirabilis_HI4320 0
Rahnella_sp._Y9602 0
Pectobacterium_wasabiae_WPP163 0
Pectobacterium_sp._SCC3193 0
Klebsiella_oxytoca_E718 0
Azotobacter_vinelandii_DJ 0
Pseudomonas_sp._TKP 1
Pseudomonas_sp._UW4 0
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_mendocina_ymp 0
Cenarchaeum_symbiosum_A 0
Candidatus_Nitrosopumilus_sp._AR2 0
Hyperthermus_butylicus_DSM_5456 1
Ignisphaera_aggregans_DSM_17230 0
Sulfolobus_tokodaii_str._7 0
Sulfolobus_islandicus_Y.N.15.51 0
Sulfolobus_solfataricus_P2 0
Sulfolobus_acidocaldarius_DSM_639 0
Methanocella_conradii_HZ254 0
Methanocella_paludicola_SANAE 0
Methanosaeta_concilii_GP6 0
Methanosalsum_zhilinae_DSM_4017 0
Methanohalobium_evestigatum_Z-7303 0
Methanohalophilus_mahii_DSM_5219 1
Methanoregula_boonei_6A8 0
Methanoplanus_petrolearius_DSM_11571 0
Methanoculleus_bourgensis_MS2 0
Ferroglobus_placidus_DSM_10642 0
Archaeoglobus_fulgidus_DSM_4304 0
Thermococcus_sp._4557 0
Thermococcus_onnurineus_NA1 0
Thermococcus_kodakarensis_KOD1 0
Thermococcus_gammatolerans_EJ3 0
Thermococcus_barophilus_MP 0
Pyrococcus_yayanosii_CH1 1
Thermoplasma_volcanium_GSS1 0
Thermoplasma_acidophilum_DSM_1728 0
Picrophilus_torridus_DSM_9790 0
Halopiger_xanaduensis_SH-6 0
Methanocaldococcus_sp._FS406-22 0
Methanococcus_voltae_A3 0
Methanothermobacter_thermautotrophicus_str._Delta_H 0
Methanosphaera_stadtmanae_DSM_3091 0
Methanobrevibacter_sp._AbM4 1
Methanobrevibacter_ruminantium_M1 0
Methanobrevibacter_smithii_ATCC_35061 0
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   17
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6
Cryptococcus_neoformans_var._grubii_H99_ 1
Cryptococcus_neoformans_B-3501A_ 0
Cryptococcus_neoformans_JEC21_ 0
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 0
Coccidioides_posadasii_str._Silveira_ 0
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 0
Ajellomyces_dermatitidis_ER-3_ 0
Histoplasma_capsulatum_H143 0
Histoplasma_capsulatum_H88 0
Histoplasma_capsulatum_G186AR 0
Aspergillus_fumigatus_A1163_ 0
Candida_albicans_WO-1_ 2
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_CLIB382 0
Saccharomyces_cerevisiae_CLIB324 0
Saccharomyces_cerevisiae_CBS7960 0
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_FostersB 1
Saccharomyces_cerevisiae_FostersO 1
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_LalvinQA23 0
Saccharomyces_cerevisiae_AWRI796 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_YPS163 0
Saccharomyces_cerevisiae_M22 0
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Schizosaccharomyces_pombe_972h-_ 2
Batrachochytrium_dendrobatidis_JEL423_ 1
Batrachochytrium_dendrobatidis_JAM81_ 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Hordeum_vulgare_22   (Domesticated barley)   8
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Trypanosoma_brucei_Lister_427_v4.1 1
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 2
Plasmodium_falciparum_Dd2_ 3
Chroococcidiopsis_thermalis_PCC_7203 0
Chamaesiphon_minutus_PCC_6605 0
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Synechococcus_sp._WH_7803 0
Synechococcus_elongatus_PCC_6301 1
Prochlorococcus_marinus_str._MIT_9301 0
Prochlorococcus_marinus_str._AS9601 0
Prochlorococcus_marinus_str._MIT_9313 0
Prochlorococcus_marinus_str._MIT_9312 0
Cyanobacterium_aponinum_PCC_10605 1
Stanieria_cyanosphaera_PCC_7437 0
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Anabaena_cylindrica_PCC_7122 1
Mycoplasma_mycoides_subsp._mycoides_SC_str._PG1 0
Mycoplasma_suis_str._Illinois 0
Streptomyces_albus_J1074 1
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 1
Saccharothrix_espanaensis_DSM_44229 0
Amycolatopsis_orientalis_HCCB10007 1
Actinoplanes_friuliensis_DSM_7358 1
Nocardia_brasiliensis_ATCC_700358 2
Corynebacterium_maris_DSM_45190 1
Corynebacterium_ulcerans_BR-AD22 1
Corynebacterium_ulcerans_809 1
Corynebacterium_callunae_DSM_20147 1
Corynebacterium_glutamicum_SCgG2 1
Corynebacterium_glutamicum_SCgG1 1
Corynebacterium_diphtheriae_VA01 1
Corynebacterium_diphtheriae_HC04 1
Corynebacterium_diphtheriae_HC03 1
Corynebacterium_diphtheriae_CDCE_8392 1
Clavibacter_michiganensis_subsp._sepedonicus 1
Dehalococcoides_mccartyi_GY50 1
Dehalococcoides_mccartyi_DCMB5 1
Dehalococcoides_mccartyi_BTF08 1
Dehalococcoides_sp._GT 1
Dehalococcoides_sp._CBDB1 1
Eubacterium_siraeum_V10Sc8a 0
Faecalibacterium_prausnitzii_L2-6 1
Desulfosporosinus_meridiei_DSM_13257 1
Desulfitobacterium_hafniense_DCB-2 1
Desulfotomaculum_gibsoniae_DSM_7213 1
Roseburia_intestinalis_XB6B4 0
Candidatus_Arthromitus_sp._SFB-rat-Yit 1
Candidatus_Arthromitus_sp._SFB-mouse-Yit 1
Clostridium_kluyveri_NBRC_12016 1
Clostridium_tetani_genome_12124569 1
Clostridium_perfringens_SM101 0
Clostridium_botulinum_H04402_065 1
Clostridium_botulinum_F_str._230613 1
Clostridium_botulinum_F_str._Langeland 1
Clostridium_botulinum_E3_str._Alaska_E43 1
Clostridium_botulinum_B1_str._Okra 1
Clostridium_botulinum_Ba4_str._657 1
Clostridium_botulinum_A2_str._Kyoto 1
Clostridium_botulinum_A3_str._Loch_Maree 1
Clostridium_botulinum_A_str._Hall 1
Clostridium_botulinum_A_str._ATCC_19397 1
Carnobacterium_maltaromaticum_LMA28 1
Melissococcus_plutonius_ATCC_35311 0
Enterococcus_mundtii_QU_25 1
Enterococcus_faecalis_str._Symbioflor_1 1
Enterococcus_faecalis_D32 0
Enterococcus_faecalis_OG1RF 1
Enterococcus_faecalis_V583 1
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 1
Lactobacillus_johnsonii_N6.2 0
Lactobacillus_johnsonii_DPC_6026 0
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 1
Lactococcus_lactis_subsp._lactis_CV56 1
Lactococcus_lactis_subsp._lactis_KF147 1
Lactococcus_lactis_subsp._lactis_Il1403 0
Lactococcus_lactis_subsp._cremoris_A76 1
Lactococcus_lactis_subsp._cremoris_NZ9000 1
Streptococcus_anginosus_C238 0
Streptococcus_anginosus_C1051 0
Streptococcus_dysgalactiae_subsp._equisimilis_167 1
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 1
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 0
Streptococcus_oligofermentans_AS_1.3089 1
Streptococcus_iniae_SF1 1
Streptococcus_parasanguinis_FW213 1
Streptococcus_pyogenes_MGAS10750 0
Streptococcus_pyogenes_MGAS10270 0
Streptococcus_pyogenes_MGAS9429 0
Streptococcus_agalactiae_ILRI112 1
Streptococcus_agalactiae_ILRI005 1
Streptococcus_agalactiae_09mas018883 1
Streptococcus_agalactiae_2-22 1
Streptococcus_agalactiae_GD201008-001 1
Streptococcus_agalactiae_NEM316 1
Streptococcus_agalactiae_2603V/R 1
Streptococcus_mutans_GS-5 0
Streptococcus_mutans_LJ23 0
Streptococcus_mutans_UA159 0
Streptococcus_thermophilus_MN-ZLW-002 1
Streptococcus_thermophilus_JIM_8232 1
Streptococcus_thermophilus_ND03 1
Streptococcus_thermophilus_CNRZ1066 1
Streptococcus_thermophilus_LMG_18311 1
Streptococcus_suis_T15 1
Streptococcus_suis_TL13 1
Streptococcus_suis_SC070731 1
Streptococcus_suis_S735 1
Streptococcus_suis_ST3 1
Streptococcus_suis_D9 1
Streptococcus_suis_SS12 1
Streptococcus_suis_D12 1
Streptococcus_suis_ST1 1
Streptococcus_suis_A7 1
Streptococcus_suis_JS14 1
Streptococcus_suis_BM407 1
Streptococcus_suis_SC84 1
Streptococcus_suis_GZ1 0
Streptococcus_suis_98HAH33 0
Streptococcus_suis_05ZYH33 0
Streptococcus_salivarius_CCHSS3 1
Streptococcus_salivarius_JIM8777 1
Exiguobacterium_antarcticum_B7 2
Thermobacillus_composti_KWC4 1
Paenibacillus_mucilaginosus_KNP414 2
Paenibacillus_mucilaginosus_K02 2
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_SC2 0
Listeria_monocytogenes_EGD_sequence 1
Listeria_monocytogenes_N53-1 1
Listeria_monocytogenes_La111 1
Listeria_monocytogenes_serotype_4b_str._LL195 1
Listeria_monocytogenes_07PF0776 1
Listeria_monocytogenes_M7 1
Listeria_monocytogenes_J1-220 1
Listeria_monocytogenes_J1816 1
Listeria_monocytogenes_SLCC2376 1
Listeria_monocytogenes_SLCC5850 1
Listeria_monocytogenes_ATCC_19117 1
Listeria_monocytogenes_L312 1
Listeria_monocytogenes_SLCC2479 1
Listeria_monocytogenes_SLCC7179 1
Listeria_monocytogenes_SLCC2540 1
Listeria_monocytogenes_SLCC2378 1
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 1
Listeria_monocytogenes_serotype_7_str._SLCC2482 1
Listeria_monocytogenes_08-5578 1
Listeria_monocytogenes_08-5923 1
Listeria_monocytogenes_L99 1
Listeria_monocytogenes_HCC23 1
Listeria_monocytogenes_10403S 1
Listeria_monocytogenes_J0161 1
Listeria_monocytogenes_Finland_1998 1
Listeria_monocytogenes_FSL_R2-561 1
Listeria_monocytogenes_serotype_4b_str._F2365 1
Listeria_monocytogenes_EGD-e 1
Geobacillus_sp._C56-T3 1
Geobacillus_sp._Y412MC52 1
Geobacillus_sp._Y412MC61 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 2
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 2
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 2
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 2
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 2
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 2
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 2
Bacillus_amyloliquefaciens_LFB112 2
Bacillus_amyloliquefaciens_CC178 2
Bacillus_amyloliquefaciens_Y2 2
Bacillus_amyloliquefaciens_IT-45 2
Bacillus_amyloliquefaciens_XH7 2
Bacillus_amyloliquefaciens_LL3 2
Bacillus_amyloliquefaciens_TA208 2
Bacillus_amyloliquefaciens_DSM_7 2
Bacillus_licheniformis_9945A 1
Bacillus_subtilis_PY79 3
Bacillus_subtilis_XF-1 3
Bacillus_subtilis_QB928 3
Bacillus_subtilis_BSn5 3
Bacillus_subtilis_subsp._subtilis_str._BAB-1 3
Bacillus_subtilis_subsp._subtilis_str._BSP1 3
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 3
Bacillus_subtilis_subsp._subtilis_6051-HGW 3
Bacillus_subtilis_subsp._spizizenii_TU-B-10 2
Bacillus_subtilis_subsp._spizizenii_str._W23 3
Bacillus_subtilis_subsp._natto_BEST195 3
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_infantis_NRRL_B-14911 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_HD-771 2
Bacillus_thuringiensis_HD-789 2
Bacillus_thuringiensis_MC28 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 2
Bacillus_thuringiensis_YBT-1518 2
Bacillus_thuringiensis_Bt407 2
Bacillus_thuringiensis_serovar_konkukian_str._97-27 2
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 2
Bacillus_thuringiensis_BMB171 2
Bacillus_thuringiensis_serovar_finitimus_YBT-020 2
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 2
Bacillus_cereus_FRI-35 2
Bacillus_cereus_biovar_anthracis_str._CI 2
Bacillus_cereus_AH820 2
Bacillus_cereus_AH187 2
Bacillus_cereus_B4264 2
Bacillus_cereus_G9842 2
Bacillus_cereus_Q1 2
Bacillus_cereus_F837/76 2
Bacillus_cereus_NC7401 2
Bacillus_cereus_E33L 3
Bacillus_cereus_ATCC_14579 2
Bacillus_cereus_ATCC_10987 1
Bacillus_anthracis_str._H9401 2
Bacillus_anthracis_str._CDC_684 2
Bacillus_anthracis_str._'Ames_Ancestor' 2
Bacillus_anthracis_str._Sterne 2
Bacillus_anthracis_str._Ames 2
Bacillus_megaterium_WSH-002 2
Bacillus_megaterium_QM_B1551 2
Staphylococcus_aureus_CA-347 0
Staphylococcus_aureus_Bmb9393 0
Staphylococcus_aureus_08BA02176 0
Staphylococcus_aureus_04-02981 0
Staphylococcus_aureus_subsp._aureus_TW20 0
Staphylococcus_aureus_subsp._aureus_str._JKD6008 0
Staphylococcus_aureus_subsp._aureus_71193 0
Staphylococcus_aureus_subsp._aureus_S0385 0
Staphylococcus_aureus_subsp._aureus_JH9 0
Echinicola_vietnamensis_DSM_17526 1
Candidatus_Uzinura_diaspidicola_str._ASNER 0
Nonlabens_dokdonensis_DSW-6 1
Psychroflexus_torquis_ATCC_700755 1
Chlamydia_psittaci_01DC12 0
Chlamydia_psittaci_WC 0
Chlamydia_psittaci_M56 0
Chlamydia_psittaci_WS/RT/E30 0
Chlamydia_psittaci_VS225 0
Chlamydia_psittaci_MN 0
Chlamydia_psittaci_GR9 0
Chlamydia_psittaci_84/55 0
Chlamydia_psittaci_08DC60 0
Chlamydia_psittaci_02DC15 0
Chlamydia_psittaci_C19/98 0
Chlamydia_psittaci_NJ1 0
Chlamydia_psittaci_CP3 0
Chlamydophila_psittaci_RD1 0
Chlamydia_psittaci_Mat116 0
Chlamydophila_psittaci_6BC 0
Chlamydophila_psittaci_6BC 0
Leptospira_interrogans_serovar_Lai_str._56601 0
Borrelia_garinii_NMJW1 0
Thermotoga_maritima_MSB8 0
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_desulfuricans_ND132 1
Neisseria_meningitidis_WUE_2594 0
Neisseria_gonorrhoeae_FA_1090 0
Ralstonia_pickettii_12J 0
Variovorax_paradoxus_B4 1
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 0
Gluconacetobacter_diazotrophicus_PAl_5 0
Wolbachia_endosymbiont_of_Onchocerca_ochengi_str._Adamawa_Cameroon 0
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 0
Methylobacterium_extorquens_DM4 1
Methylobacterium_extorquens_PA1 1
Rhizobium_etli_CFN_42 0
Rhizobium_etli_bv._mimosae_str._Mim1 0
Rhizobium_leguminosarum_bv._trifolii_WSM2304 0
Rhizobium_leguminosarum_bv._trifolii_WSM1325 0
Liberibacter_crescens_BT-1 0
Candidatus_Liberibacter_americanus_str._Sao_Paulo 0
Mannheimia_haemolytica_USDA-ARS-USMARC-183 0
Haemophilus_influenzae_F3047 0
Haemophilus_influenzae_F3031 0
Vibrio_sp._EJY3 1
Vibrio_parahaemolyticus_BB22OP 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1
Shewanella_sp._W3-18-1 0
Shewanella_sp._ANA-3 1
Shewanella_baltica_BA175 1
Shewanella_baltica_OS678 1
Shewanella_baltica_OS117 1
Shewanella_baltica_OS223 1
Shewanella_baltica_OS195 1
Shewanella_baltica_OS155 1
Shewanella_sp._MR-7 1
Shewanella_putrefaciens_200 0
Glaciecola_psychrophila_170 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1
Alteromonas_macleodii_str._'English_Channel_615' 1
Alteromonas_macleodii_AltDE1 1
Alteromonas_macleodii_str._'English_Channel_673' 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1
Alteromonas_macleodii_str._'Black_Sea_11' 1
Alteromonas_macleodii_ATCC_27126 1
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_axonopodis_Xac29-1 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Rahnella_aquatilis_HX2 0
Dickeya_dadantii_3937 0
Shigella_boydii_Sb227 0
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 0
Enterobacter_aerogenes_EA1509E 0
Escherichia_coli_P12b 0
Escherichia_coli_O26:H11_str._11368 0
Escherichia_coli_O111:H-_str._11128 0
Enterobacter_cloacae_subsp._cloacae_ENHKU01 0
Azotobacter_vinelandii_CA6 0
Azotobacter_vinelandii_CA 0
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_putida_GB-1 0
Pseudomonas_protegens_CHA0 0
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 1
Pseudomonas_fluorescens_Pf0-1 0
Pseudomonas_mendocina_NK-01 0
Acinetobacter_calcoaceticus_ruh2202 0
Acinetobacter_baumannii_SDF 0
Acinetobacter_junii__SH205 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 0
Sulfolobus_islandicus_LAL14/1 0
Sulfolobus_islandicus_REY15A 0
Sulfolobus_islandicus_HVE10/4 0
Sulfolobus_islandicus_Y.G.57.14 0
Sulfolobus_islandicus_L.S.2.15 0
Sulfolobus_islandicus_M.16.27 0
Sulfolobus_islandicus_M.14.25 0
Sulfolobus_islandicus_M.16.4 0
Sulfolobus_islandicus_L.D.8.5 0
Sulfolobus_acidocaldarius_SUSAZ 0
Sulfolobus_acidocaldarius_Ron12/I 0
Sulfolobus_acidocaldarius_N8 0
Methanomethylovorans_hollandica_DSM_15978 0
Methanolobus_psychrophilus_R15 0
Methanoregula_formicica_Methanoregula_formicicum_SMSP 0
Archaeoglobus_sulfaticallidus_PM70-1 0
Thermococcus_sp._CL1 0
Thermococcus_litoralis_DSM_5473 0
Pyrococcus_sp._NA2 1
Ferroplasma_acidarmanus_fer1 0
Natronobacterium_gregoryi_SP2 0
Methanococcus_maripaludis_C7 0
Methanobacterium_sp._SWAN-1 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4
Gorilla_gorilla_69_3.1   (Western gorilla)   6
Pongo_abelii_69_2   (Sumatran orangutan)   5
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5
Macaca_mulatta_69_1   (Rhesus monkey)   7
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_69_3   (Small-eared galago)   5
Microcebus_murinus_69_1   (Gray mouse lemur)   3
Rattus_norvegicus_69_3.4   (Norway rat)   9
Mus_musculus_69_38   (House mouse)   3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   4
Cavia_porcellus_69_3   (Domestic guinea pig)   3
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   3
Tupaia_belangeri_69   (Northern tree shrew)   3
Sus_scrofa_69_10.2   (Pig)   21
Bos_taurus_69_3.1   (Cattle)   5
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1
Ailuropoda_melanoleuca_69_1   (Giant panda)   4
Canis_familiaris_69_3.1   (Dog)   2
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   7
Myotis_lucifugus_69_2.0   (Little brown bat)   3
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   3
Erinaceus_europaeus_69   (Western European hedgehog)   1
Procavia_capensis_69_1   (Cape rock hyrax)   3
Loxodonta_africana_69_3   (African savanna elephant)   5
Echinops_telfairi_69   (Small Madagascar hedgehog)   5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   3
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   9
Ornithorhynchus_anatinus_69_5   (Platypus)   43
Petromyzon_marinus_69_7.0   (Sea lamprey)   18
Meleagris_gallopavo_69_2   (Turkey)   7
Gallus_gallus_69_2   (Chicken)   8
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   11
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3
Anolis_carolinensis_69_2.0   (Green anole)   12
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3
Latimeria_chalumnae_69_1   (Coelacanth)   7
Gadus_morhua_69_1   (Atlantic cod)   17
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   10
Takifugu_rubripes_69_4   (Torafugu)   4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   11
Oryzias_latipes_69_1   (Japanese medaka)   6
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   9
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4
Danio_rerio_69_9   (Zebrafish)   11
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_69   (Vase tunicate)   5
Drosophila_melanogaster_69_5   (Fruit fly)   0
Caenorhabditis_elegans_69_215   (Roundworm)   1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0
Arabidopsis_thaliana_10   (Thale cress)   4

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   181
Homo_sapiens__(NCBI_version)   (Human)   5
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3
Heliconius_numata__(Incomplete) 7
Loa_loa_v3.3_(Request)   (Eye worm)   7
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   15
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3
Moniliophthora_perniciosa_FA553__(Genome_survey) 5
Encephalitozoon_intestinalis__(endoparasite) 1
Encephalitozoon_cuniculi_(endoparasite) 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   0
Lotus_japonicus__(Early_assembly) 16
Malus_x_domestica_(Duplicate)   (Apple)   4
Ricinus_communis__(Early_assembly)   (Castor bean)   2
Nicotiana_benthamiana_0.4.4_(Early_draft) 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3
Phoenix_dactylifera__(Early_draft)   (Date palm)   5
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1
NCBI_plasmid_sequences_(Plasmids) 1
UniProt__viral_sequences_(Viral) 7
PDB_chains_(SCOP_1.75)_(PDB) 90
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1949
STRING_v9.0.5_(STRING) 620
Uniprot_2018_03_genome 10610
TargetDB__(Targets) 178
NCBI_2017_08_genome 15750
NCBI_viral_sequences_(Viral) 2
Protein_Data_Bank_(all_PDB_sequenc) 538
Protozoadb_2010_08_(Protozoadb) 75

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.