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Home > SCOP hierarchy > Domain combination - 50978,51004,_gap_

Domain combinations for 50978,51004,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

50978 - WD40 repeat-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Homo_sapiens_76_38 (Human) 1

Pongo_abelii_76_2 (Sumatran orangutan) 1

Papio_anubis_76 (Olive baboon) 1

Callithrix_jacchus_76_3.2.1 (White-tufted-ear marmoset) 1

Rattus_norvegicus_76_5.0 (Norway rat) 1

Mus_musculus_76_38 (House mouse) 1

Cavia_porcellus_76_3 (Domestic guinea pig) 1

Oryctolagus_cuniculus_76_2 (Rabbit) 1

Bos_taurus_76_3.1 (Cattle) 1

Ovis_aries_76_3.1 (Sheep) 1

Tursiops_truncatus_76_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_76_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_76_1 (Giant panda) 1

Felis_catus_76_6.2 (Domestic cat) 1

Echinops_telfairi_76 (Small Madagascar hedgehog) 1

Monodelphis_domestica_76_5 (Gray short-tailed opossum) 1

Saccoglossus_kowalevskii_v3.0 1

Meleagris_gallopavo_76_2 (Turkey) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 1

Lepisosteus_oculatus_76 (Spotted gar) 1

Xiphophorus_maculatus_76_4.4.2 (Southern platyfish) 1

Crassostrea_gigas_22 (Pacific oyster) 1

Lottia_gigantea_ (Owl limpet) 1

Helobdella_robusta_ 1

Danaus_plexippus_OGS1.0 (Monarch butterfly) 2

Apis_mellifera_38.2d_(Not_maintained) (Honey bee) 2

Harpegnathos_saltator_v3.3 (Jerdon's jumping ant) 1

Linepithema_humile_v1.1 (Argentine ant) 1

Pogonomyrmex_barbatus_v1.2 (Red harvester ant) 1

Solenopsis_invicta_v.2.2.3 (Red fire ant) 1

Acromyrmex_echinatior_v3.8 (Panamanian leafcutter ant) 1

Atta_cephalotes_v1.1 1

Camponotus_floridanus_v3.3 (Florida carpenter ant) 1

Megaselia_scalaris_22 1

Rhodnius_prolixus_22 1

Sarcoptes_scabiei 1

Hymenolepis_microstoma_ 1

Echinococcus_multilocularis_ 1

Echinococcus_granulosus_ 1

Monosiga_brevicollis_ 0

Capsaspora_owczarzaki_ATCC_30864_ 1

Phycomyces_blakesleeanus_ 1

Mucor_circinelloides_ 1

Rhizomucor_miehei_CAU432_ 1

Malassezia_globosa_CBS_7966_ 2

Rhodotorula_graminis_WP1_v1.0 0

Piloderma_croceum_F_1598_v1.0 1

Serpula_lacrymans_var._lacrymans_S7.9_ 1

Paxillus_rubicundulus_Ve08.2h10_v1.0 1

Pisolithus_microcarpus_441_v1.0 1

Pisolithus_tinctorius_Marx_270_v1.0 1

Scleroderma_citrinum_Foug_A_v1.0 1

Pleurotus_ostreatus_ (Oyster mushroom) 3

Galerina_marginata_v1.0 1

Hebeloma_cylindrosporum_h7_v2.0 1

Heterobasidion_annosum_ 0

Fomitopsis_pinicolav1.0 1

Fomitopsis_pinicola_FP-58527_SS1_v3.0 1

Phanerochaete_chrysosporium_RP-78_2.1 1

Dichomitus_squalens 2

Trametes_versicolor_v1.0 2

Tremella_mesenterica_ (Witches' butter) 1

Apiospora_montagnei_NRRL_25634_v1.0 1

Fusarium_graminearum_ 1

Botrytis_cinerea_B05.10_ 1

Sclerotinia_sclerotiorum_ 1

Septoria_musiva_v1.0 1

Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1

Microsporum_canis_CBS_113480_ 1

Trichophyton_equinum_CBS_127.97_ 2

Trichophyton_verrucosum_HKI_0517_ 1

Trichophyton_tonsurans_CBS_112818_ 2

Trichophyton_rubrum_CBS_118892_ 1

Aspergillus_fumigatus_Af293 1

Aspergillus_glaucus 1

Neosartorya_fischeri_NRRL_181_ 1

Aspergillus_oryzae_RIB40_ 1

Tuber_melanosporum_Mel28_22 1

Tuber_melanosporum_Vittad_ (Perigord truffle) 1

Debaromyces_hansenii 1

Pichia_pastoris_GS115_ 1

Candida_glabrata_CBS138 1

Kluyveromyces_waltii 0

Schizosaccharomyces_pombe (Fission yeast) 0

Catenaria_anguillulae_PL171_v1.0 0

Spizellomyces_punctatus_DAOM_BR117_ 0

Selaginella_moellendorffii_ 2

Eucalyptus_grandis_v201 (Rose gum) 3

Theobroma_cacao_B97-61/B2_v1 (Cacao) 1

Gossypium_raimondii_v221 8

Citrus_clementina_v165 1

Citrus_sinensis_v154 (Sweet orange) 1

Thellungiella_halophila_v173 3

Brassica_rapa_Chiifu-401_1.2 (Field mustard) 3

Capsella_rubella_v183 3

Arabidopsis_lyrata_ (Lyrate rockcress) 1

Arabidopsis_thaliana_10 (Thale cress) 2

Carica_papaya_ (Papaya) 1

Phaseolus_vulgaris_v186 (French bean) 4

Glycine_max_v109 (Soybean) 1

Cucumis_sativus_v122 (Cucumber) 4

Fragaria_vesca_ (Wild strawberry) 1

Malus_domestica_v196 (Apple) 1

Prunus_persica_v139 (Peach) 3

Linum_usitatissimum_v200 (Flax) 4

Manihot_esculenta_v147 (Cassava) 7

Populus_trichocarpa_v156 (Black cottonwood) 2

Mimulus_guttatus_v140 (Spotted monkey flower) 1

Actinidia_chinensis_Hongyang_ 1

Aquilegia_coerulea_v195 1

Triticum_urartu_22 2

Triticum_aestivum_22 (Bread wheat) 2

Aegilops_tauschii_22 2

Oryza_barthii_22 (African wild rice) 3

Oryza_glaberrima (African rice) 1

Oryza_punctata_22 2

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 3

Oryza_sativa_v193 (Rice) 3

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 1

Panicum_virgatum_v202 (Switchgrass) 1

Zea_mays_subsp._mays_ (Maize) 1

Zea_mays_v181 (Maize) 1

Sorghum_bicolor_ (Sorghum) 1

Musa_balbisiana (Balbis banana) 1

Musa_acuminata_22 (Wild Malaysian banana) 2

Physcomitrella_patens 2

Chlorella_variabilis_sp._NC64A_ 1

Ostreococcus_sp._RCC809_ 1

Bathycoccus_prasinos_ 1

Micromonas_sp._RCC299_ 1

Porphyridium_purpureum_02_2012 1

Leishmania_infantum_JPCM5_2.4 1

Trypanosoma_brucei_gambiense_v4.1 1

Trypanosoma_brucei_TREU927_v4.1 1

Albugo_laibachii_22 1

Pythium_ultimum_v1.7-2 1

Pythium_irregulare_DAOM_BR486_22 1

Pythium_vexans_DAOM_BR484_22 1

Phytophthora_ramorum_1.1 (Sudden oak death agent) 1

Phytophthora_sojae_1.1 1

Phytophthora_infestans_T30-4_ 1

Hyaloperonospora_arabidopsidis_22 1

Fragilariopsis_cylindrus 1

Toxoplasma_gondii_GT1 1

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Strains
Genome Number

Paracoccidioides_brasiliensis_Pb01_ 0

Schizosaccharomyces_pombe_972h-_ 0

Theobroma_cacao_Matina_1-6_v0.9 (Cacao) 1

Hordeum_vulgare_22 (Domesticated barley) 2

Oryza_sativa_ssp._Indica_(Subspecies) (Long-grained rice) 1

Longest transcript per gene
Genome Number

Pongo_abelii_69_2 (Sumatran orangutan) 1

Rattus_norvegicus_69_3.4 (Norway rat) 1

Cavia_porcellus_69_3 (Domestic guinea pig) 1

Bos_taurus_69_3.1 (Cattle) 1

Tursiops_truncatus_69_1 (Bottlenose dolphin) 1

Mustela_putorius_furo_69_1.0 (Domestic ferret) 1

Ailuropoda_melanoleuca_69_1 (Giant panda) 1

Echinops_telfairi_69 (Small Madagascar hedgehog) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 1

Meleagris_gallopavo_69_2 (Turkey) 1

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 1

Arabidopsis_thaliana_10 (Thale cress) 2

Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 1

Homo_sapiens__(NCBI_version) (Human) 1

Malus_x_domestica_(Duplicate) (Apple) 1

Ricinus_communis__(Early_assembly) (Castor bean) 2

Nicotiana_benthamiana_0.4.4_(Early_draft) 1

STRING_v9.0.5_(STRING) 34

NCBI_2017_08_genome 425

Uniprot_2018_03_genome 2928

Protozoadb_2010_08_(Protozoadb) 2

Core_Eukaryotic_Genes_458_(CEGMA) 2

TargetDB__(Targets) 2

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Domain combinations for 50978,51004,_gap_ superfamilies in groups of genomes