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Domain combinations for 51445,49785 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51445 - (Trans)glycosidases
49785 - Galactose-binding domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Mus_musculus_76_38   (House mouse)   0
Takifugu_rubripes_76_4   (Torafugu)   1
Oikopleura_dioica 0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 5
Crassostrea_gigas_22   (Pacific oyster)   2
Capitella_sp._I_ 1
Heliconius_melpomene_   (Postman butterfly)   1
Lucilia_cuprina   (Australian sheep blowfly)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Acyrthosiphon_pisum_   (Pea aphid)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Caenorhabditis_briggsae_2 0
Mnemiopsis_leidyi   (Sea walnut)   0
Acropora_digitifera_v1.0 1
Hydra_vulgaris 1
Trichoplax_adhaerens_ 1
Monosiga_brevicollis_ 1
Capsaspora_owczarzaki_ATCC_30864_ 0
Sphaerobolus_stellatus_v1.0 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1
Tulasnella_calospora_AL13/4D_v1.0 0
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Magnaporthe_grisea_70-15_ 1
Chaetomium_globosum_CBS_148.51_ 1
Aspergillus_zonatus_v1.0 1
Aspergillus_sydowii_v1.0 0
Aspergillus_versicolor_v1.0 0
Aspergillus_terreus_NIH2624_ 0
Dictyostelium_purpureum_ 0
Selaginella_moellendorffii_ 19
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   5
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3
Gossypium_raimondii_v221 8
Citrus_clementina_v165 3
Citrus_sinensis_v154   (Sweet orange)   2
Thellungiella_halophila_v173 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1
Arabidopsis_thaliana_10   (Thale cress)   1
Carica_papaya_   (Papaya)   2
Medicago_truncatula_   (Barrel medic)   2
Phaseolus_vulgaris_v186   (French bean)   2
Glycine_max_v109   (Soybean)   3
Cucumis_sativus_v122   (Cucumber)   3
Fragaria_vesca_   (Wild strawberry)   2
Malus_domestica_v196   (Apple)   1
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   2
Manihot_esculenta_v147   (Cassava)   7
Populus_trichocarpa_v156   (Black cottonwood)   4
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_lycopersicum_v.2.3   (Tomato)   2
Solanum_tuberosum_   (Potato)   5
Actinidia_chinensis_Hongyang_ 2
Aquilegia_coerulea_v195 5
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   3
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   2
Oryza_barthii_22   (African wild rice)   2
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 2
Oryza_glaberrima   (African rice)   2
Oryza_punctata_22 2
Oryza_nivara_22 2
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   3
Oryza_sativa_v193   (Rice)   3
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Panicum_virgatum_v202   (Switchgrass)   3
Setaria_italica_v164   (Foxtail millet)   3
Zea_mays_subsp._mays_   (Maize)   3
Zea_mays_v181   (Maize)   3
Sorghum_bicolor_   (Sorghum)   3
Musa_balbisiana   (Balbis banana)   3
Musa_acuminata_22   (Wild Malaysian banana)   2
Amborella_trichopoda_22 3
Physcomitrella_patens 1
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 0
Ichthyophthirius_multifiliis_strain_G5_ 1
Trichomonas_vaginalis_ 0
Gloeocapsa_sp._PCC_7428 1
Acidothermus_cellulolyticus_11B 1
Catenulispora_acidiphila_DSM_44928 1
Streptosporangium_roseum_DSM_43021 0
Kitasatospora_setae_KM-6054 0
Streptomyces_coelicolor_A3(2) 1
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 2
Streptomyces_violaceusniger_Tu_4113 2
Streptomyces_scabiei_87.22 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
Actinosynnema_mirum_DSM_43827 1
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 1
Kribbella_flavida_DSM_17836 1
Actinoplanes_sp._N902-109 0
Actinoplanes_sp._SE50/110 3
Actinoplanes_missouriensis_431 3
Microbacterium_testaceum_StLB037 1
Brachybacterium_faecium_DSM_4810 0
Isoptericola_variabilis_225 0
Renibacterium_salmoninarum_ATCC_33209 1
Bifidobacterium_longum_subsp._longum_JDM301 1
Bifidobacterium_bifidum_S17 0
Arcanobacterium_haemolyticum_DSM_20595 0
Herpetosiphon_aurantiacus_DSM_785 1
Roseiflexus_sp._RS-1 0
Roseiflexus_castenholzii_DSM_13941 0
Chloroflexus_sp._MS-G 0
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aurantiacus_J-10-fl 0
Truepera_radiovictrix_DSM_17093 0
Deinococcus_gobiensis_I-0 1
Clostridium_clariflavum_DSM_19732 0
Clostridium_cellulolyticum_H10 0
Clostridium_thermocellum_ATCC_27405 0
Ruminococcus_albus_7 0
Clostridium_phytofermentans_ISDg 1
Clostridium_lentocellum_DSM_5427 0
Heliobacterium_modesticaldum_Ice1 0
Clostridium_sp._BNL1100 0
Clostridium_perfringens_ATCC_13124 1
Clostridium_cellulovorans_743B 2
Clostridium_acetobutylicum_ATCC_824 1
Mahella_australiensis_50-1_BON 0
Caldicellulosiruptor_kronotskyensis_2002 0
Caldicellulosiruptor_hydrothermalis_108 0
Caldicellulosiruptor_owensensis_OL 0
Caldicellulosiruptor_lactoaceticus_6A 0
Caldicellulosiruptor_kristjanssonii_177R1B 0
Caldicellulosiruptor_saccharolyticus_DSM_8903 0
Caldicellulosiruptor_bescii_DSM_6725 0
Halothermothrix_orenii_H_168 0
Streptococcus_sp._I-P16 0
Streptococcus_sp._I-G2 0
Streptococcus_pseudopneumoniae_IS7493 0
Streptococcus_mitis_B6 0
Streptococcus_parasanguinis_ATCC_15912 0
Streptococcus_pneumoniae_P1031 0
Streptococcus_oralis_Uo5 0
Streptococcus_gordonii_str._Challis_substr._CH1 0
Paenibacillus_sp._JDR-2 1
Paenibacillus_mucilaginosus_3016 1
Paenibacillus_polymyxa_M1 1
Bacillus_cellulosilyticus_DSM_2522 0
Melioribacter_roseus_P3M 0
Ignavibacterium_album_JCM_16511 0
Haliscomenobacter_hydrossis_DSM_1100 1
Niastella_koreensis_GR20-10 4
Chitinophaga_pinensis_DSM_2588 2
Belliella_baltica_DSM_15883 1
Cyclobacterium_marinum_DSM_745 0
Fibrella_aestuarina 1
Leadbetterella_byssophila_DSM_17132 1
Dyadobacter_fermentans_DSM_18053 1
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 0
Parabacteroides_distasonis_ATCC_8503 0
Tannerella_forsythia_ATCC_43037 0
Paludibacter_propionicigenes_WB4 0
Prevotella_melaninogenica_ATCC_25845 1
Prevotella_denticola_F0289 1
Prevotella_ruminicola_23 0
Alistipes_finegoldii_DSM_17242 0
Bacteroides_helcogenes_P_36-108 1
Bacteroides_vulgatus_ATCC_8482 2
Bacteroides_thetaiotaomicron_VPI-5482 5
Bacteroides_fragilis_YCH46 3
Pedobacter_saltans_DSM_12145 1
Solitalea_canadensis_DSM_3403 2
Pedobacter_heparinus_DSM_2366 0
Sphingobacterium_sp._21 2
Zunongwangia_profunda_SM-A87 1
Maribacter_sp._HTCC2170 0
Zobellia_galactanivorans 3
Muricauda_ruestringensis_DSM_13258 0
Ornithobacterium_rhinotracheale_DSM_15997 0
Capnocytophaga_canimorsus_Cc5 0
Capnocytophaga_ochracea_DSM_7271 0
Flavobacterium_indicum_GPTSA100-9 0
Flavobacterium_johnsoniae_UW101 0
Fibrobacter_succinogenes_subsp._succinogenes_S85 2
Rhodopirellula_baltica_SH_1 0
Coraliomargarita_akajimensis_DSM_45221 1
Opitutus_terrae_PB90-1 0
Akkermansia_muciniphila_ATCC_BAA-835 0
Spirochaeta_thermophila_DSM_6192 1
Thermotoga_sp._RQ2 0
Thermotoga_petrophila_RKU-1 0
Dictyoglomus_turgidum_DSM_6724 0
Candidatus_Solibacter_usitatus_Ellin6076 1
Granulicella_tundricola_MP5ACTX9 1
Granulicella_mallensis_MP5ACTX8 2
Terriglobus_saanensis_SP1PR4 1
Terriglobus_roseus_DSM_18391 2
Haliangium_ochraceum_DSM_14365 0
Stigmatella_aurantiaca_DW4/3-1 2
Burkholderia_glumae_BGR1 0
Asticcacaulis_excentricus_CB_48 1
Novosphingobium_aromaticivorans_DSM_12444 0
Saccharophagus_degradans_2-40 1
Teredinibacter_turnerae_T7901 0
Cellvibrio_japonicus_Ueda107 1
Vibrio_vulnificus_MO6-24/O 1
Psychromonas_ingrahamii_37 1
Colwellia_psychrerythraea_34H 0
Glaciecola_sp._4H-3-7+YE-5 0
Hahella_chejuensis_KCTC_2396 1
Xylella_fastidiosa_M23 1
Xanthomonas_axonopodis_pv._citri_str._306 0
Xanthomonas_albilineans_GPE_PC73 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Ignisphaera_aggregans_DSM_17230 0
Methanocella_paludicola_SANAE 0
Haloterrigena_turkmenica_DSM_5511 1

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Hordeum_vulgare_22   (Domesticated barley)   4
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2
Chroococcidiopsis_thermalis_PCC_7203 0
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 0
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_venezuelae_ATCC_10712 0
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Amycolatopsis_mediterranei_RB 2
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 0
Actinoplanes_friuliensis_DSM_7358 0
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1
Bifidobacterium_bifidum_PRL2010 0
Bifidobacterium_bifidum_BGN4 0
Chthonomonas_calidirosea_T49 1
Eubacterium_siraeum_V10Sc8a 0
Clostridium_thermocellum_DSM_1313 0
Ruminococcus_champanellensis_18P13 0
Clostridium_perfringens_SM101 1
Clostridium_perfringens_str._13 1
Clostridium_acetobutylicum_DSM_1731 1
Clostridium_acetobutylicum_EA_2018 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 0
Halobacteroides_halobius_DSM_5150 0
Melissococcus_plutonius_ATCC_35311 0
Streptococcus_oligofermentans_AS_1.3089 0
Streptococcus_iniae_SF1 1
Streptococcus_parasanguinis_FW213 0
Streptococcus_pneumoniae_A026 0
Streptococcus_pneumoniae_ST556 0
Streptococcus_pneumoniae_SPNA45 0
Streptococcus_pneumoniae_SPN994039 0
Streptococcus_pneumoniae_SPN994038 0
Streptococcus_pneumoniae_SPN034183 0
Streptococcus_pneumoniae_SPN034156 0
Streptococcus_pneumoniae_INV104 0
Streptococcus_pneumoniae_INV200 0
Streptococcus_pneumoniae_OXC141 0
Streptococcus_pneumoniae_gamPNI0373 0
Streptococcus_pneumoniae_AP200 0
Streptococcus_pneumoniae_ATCC_700669 0
Streptococcus_pneumoniae_TCH8431/19A 0
Streptococcus_pneumoniae_CGSP14 0
Streptococcus_pneumoniae_G54 0
Streptococcus_pneumoniae_JJA 0
Streptococcus_pneumoniae_70585 0
Streptococcus_pneumoniae_Hungary19A-6 0
Streptococcus_pneumoniae_Taiwan19F-14 0
Streptococcus_pneumoniae_D39 0
Streptococcus_pneumoniae_670-6B 0
Streptococcus_pneumoniae_R6 0
Streptococcus_pneumoniae_TIGR4 0
Paenibacillus_sp._Y412MC10 1
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 1
Paenibacillus_polymyxa_SC2 1
Amphibacillus_xylanus_NBRC_15112 1
Echinicola_vietnamensis_DSM_17526 0
Emticicia_oligotrophica_DSM_17448 1
Prevotella_sp._oral_taxon_299_str._F0039 0
Prevotella_dentalis_DSM_3688 1
Alistipes_shahii_WAL_8301 0
Bacteroides_xylanisolvens_XB1A 1
Bacteroides_fragilis_638R 3
Bacteroides_fragilis_NCTC_9343 3
Fibrobacter_succinogenes_subsp._succinogenes_S85 2
Singulisphaera_acidiphila_DSM_18658 0
Spirochaeta_thermophila_DSM_6578 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1
Simiduia_agarivorans_SA1_=_DSM_21679 0
Vibrio_vulnificus_CMCP6 1
Vibrio_vulnificus_YJ016 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 1
Xylella_fastidiosa_M12 1
Xylella_fastidiosa_Temecula1 1
Xylella_fastidiosa_9a5c 1
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_pv._citrumelo_F1 0
Xanthomonas_axonopodis_Xac29-1 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 0
Xanthomonas_oryzae_pv._oryzae_KACC_10331 0
Xanthomonas_campestris_pv._raphani_756C 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0

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Longest transcript per gene
Genome     Number
Felis_catus_69   (Domestic cat)   0
Arabidopsis_thaliana_10   (Thale cress)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   0
Lotus_japonicus__(Early_assembly) 4
Malus_x_domestica_(Duplicate)   (Apple)   1
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2
Phoenix_dactylifera__(Early_draft)   (Date palm)   4
NCBI_plasmid_sequences_(Plasmids) 3
PDB_chains_(SCOP_1.75)_(PDB) 1
TargetDB__(Targets) 13
Protein_Data_Bank_(all_PDB_sequenc) 16
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 39
NCBI_viral_sequences_(Viral) 0
STRING_v9.0.5_(STRING) 68
Uniprot_2018_03_genome 7389
NCBI_2017_08_genome 3028
Protozoadb_2010_08_(Protozoadb) 0

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.