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  Home > SCOP hierarchy > Domain combination - 53474,_gap_,49785,_gap_

Domain combinations for 53474,_gap_,49785,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53474 - alpha/beta-Hydrolases
49785 - Galactose-binding domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Adineta_vaga 3
Mnemiopsis_leidyi   (Sea walnut)   1
Proterospongia_sp._ATCC_50818_ 1
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Zasmidium_cellare_ATCC_36951_v1.0 1
Pichia_stipitis_CBS_6054_ 1
Candida_guilliermondii_ATCC_6260_ 1
Micromonas_pusilla_CCMP1545_v3.0 0
Bigelowiella_natans_CCMP2755_22 1
Ectocarpus_siliculosus 0
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 1
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 1
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_sojae_1.1 1
Phytophthora_infestans_T30-4_ 1
Cryptosporidium_hominis 0
Cryptosporidium_parvum_Iowa_II 0
Neospora_caninum 0
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 2
Emiliania_huxleyi_CCMP1516_ 0
Slackia_heliotrinireducens_DSM_20476 1
Ilumatobacter_coccineus 0
Nocardioides_sp._JS614 0
Segniliparus_rotundus_DSM_44985 0
Tsukamurella_paurometabola_DSM_20162 1
Gordonia_sp._KTR9 2
Gordonia_polyisoprenivorans_VH2 1
Gordonia_bronchialis_DSM_43247 2
Rhodococcus_jostii_RHA1 1
Rhodococcus_opacus_B4 1
Nocardia_cyriacigeorgica_GUH-2 2
Mycobacterium_massiliense_str._GO_06 2
Mycobacterium_abscessus_ATCC_19977 2
Mycobacterium_intracellulare_ATCC_13950 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1
Niastella_koreensis_GR20-10 1
Chitinophaga_pinensis_DSM_2588 1
Marivirga_tractuosa_DSM_4126 1
Bacteroides_vulgatus_ATCC_8482 1
Maribacter_sp._HTCC2170 1
Robiginitalea_biformata_HTCC2501 1
Zobellia_galactanivorans 1
Granulicella_tundricola_MP5ACTX9 1
Granulicella_mallensis_MP5ACTX8 1
Candidatus_Koribacter_versatilis_Ellin345 1
Terriglobus_saanensis_SP1PR4 1
Terriglobus_roseus_DSM_18391 1
Haliangium_ochraceum_DSM_14365 1
Stigmatella_aurantiaca_DW4/3-1 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Burkholderia_phytofirmans_PsJN 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Xylella_fastidiosa_M23 1
gamma_proteobacterium_HdN1 2

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Strains
Genome     Number
Batrachochytrium_dendrobatidis_JAM81_ 1
Neospora_caninum_Nc-Liverpool_6.2 0
Nocardia_brasiliensis_ATCC_700358 12
Mycobacterium_sp._MOTT36Y 1
Mycobacterium_sp._JDM601 1
Mycobacterium_abscessus_subsp._bolletii_50594 2
Mycobacterium_yongonense_05-1390 1
Mycobacterium_intracellulare_MOTT-64 1
Mycobacterium_indicus_pranii_MTCC_9506 1
Mycobacterium_intracellulare_MOTT-02 1
Nonlabens_dokdonensis_DSW-6 1
Myxococcus_stipitatus_DSM_14675 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 1
Xylella_fastidiosa_M12 1
Xylella_fastidiosa_Temecula1 1
Xylella_fastidiosa_9a5c 1
Pseudomonas_denitrificans_ATCC_13867 1

Others
Genome     Number
STRING_v9.0.5_(STRING) 23
Uniprot_2018_03_genome 6804
NCBI_2017_08_genome 3767
PDB_chains_(SCOP_1.75)_(PDB) 3
Protozoadb_2010_08_(Protozoadb) 0

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.