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  Home > SCOP hierarchy > Domain combination - _gap_,48371

Domain combinations for _gap_,48371 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

48371 - ARM repeat

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   199
Pan_troglodytes_76_2.1.4   (Chimpanzee)   30
Gorilla_gorilla_76_3.1   (Western gorilla)   49
Pongo_abelii_76_2   (Sumatran orangutan)   33
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   39
Papio_anubis_76   (Olive baboon)   43
Macaca_mulatta_76_1   (Rhesus monkey)   77
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   105
Otolemur_garnettii_76_3   (Small-eared galago)   40
Microcebus_murinus_76_1   (Gray mouse lemur)   32
Rattus_norvegicus_76_5.0   (Norway rat)   46
Mus_musculus_76_38   (House mouse)   113
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   39
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   50
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   39
Cavia_porcellus_76_3   (Domestic guinea pig)   36
Oryctolagus_cuniculus_76_2   (Rabbit)   38
Ochotona_princeps_76   (American pika)   31
Tupaia_belangeri_76   (Northern tree shrew)   30
Sus_scrofa_76_10.2   (Pig)   54
Bos_taurus_76_3.1   (Cattle)   45
Ovis_aries_76_3.1   (Sheep)   40
Vicugna_pacos_76_1   (Alpaca)   24
Tursiops_truncatus_76_1   (Bottlenose dolphin)   32
Mustela_putorius_furo_76_1.0   (Domestic ferret)   46
Ailuropoda_melanoleuca_76_1   (Giant panda)   50
Canis_familiaris_76_3.1   (Dog)   57
Felis_catus_76_6.2   (Domestic cat)   49
Equus_caballus_76_2   (Horse)   48
Myotis_lucifugus_76_2.0   (Little brown bat)   32
Pteropus_vampyrus_76_1   (Large flying fox)   37
Sorex_araneus_76_1   (European shrew)   33
Erinaceus_europaeus_76   (Western European hedgehog)   34
Procavia_capensis_76_1   (Cape rock hyrax)   33
Loxodonta_africana_76_3   (African savanna elephant)   57
Echinops_telfairi_76   (Small Madagascar hedgehog)   27
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   45
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   22
Macropus_eugenii_76_1.0   (Tammar wallaby)   26
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   49
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   37
Ornithorhynchus_anatinus_76_5   (Platypus)   50
Saccoglossus_kowalevskii_v3.0 43
Petromyzon_marinus_76_7.0   (Sea lamprey)   30
Meleagris_gallopavo_76_2   (Turkey)   41
Gallus_gallus_76_4   (Chicken)   37
Anas_platyrhynchos_76_1.0   (Mallard)   32
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   32
Ficedula_albicollis_76_1.0   (Collared flycatcher)   26
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   46
Anolis_carolinensis_76_2.0   (Green anole)   47
Xenopus_laevis_   (African clawed frog)   47
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   43
Latimeria_chalumnae_76_1   (Coelacanth)   57
Lepisosteus_oculatus_76   (Spotted gar)   42
Gadus_morhua_76_1   (Atlantic cod)   39
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   41
Takifugu_rubripes_76_4   (Torafugu)   116
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   44
Oryzias_latipes_76_1   (Japanese medaka)   42
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   38
Poecilia_formosa_76   (Amazon molly)   41
Oreochromis_niloticus_76_1.0   (Nile tilapia)   47
Astyanax_mexicanus_76   (Mexican tetra)   41
Danio_rerio_76_9   (Zebrafish)   67
Oikopleura_dioica 27
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   35
Ciona_intestinalis_76   (Vase tunicate)   25
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   72
Adineta_vaga 68
Octopus_bimaculoides_280 52
Crassostrea_gigas_22   (Pacific oyster)   25
Lottia_gigantea_   (Owl limpet)   28
Helobdella_robusta_ 17
Capitella_sp._I_ 34
Danaus_plexippus_OGS1.0   (Monarch butterfly)   29
Heliconius_melpomene_   (Postman butterfly)   29
Bombyx_mori_   (Domestic silkworm)   38
Nasonia_vitripennis_   (Jewel wasp)   20
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   50
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   25
Linepithema_humile_v1.1   (Argentine ant)   24
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   23
Solenopsis_invicta_v.2.2.3   (Red fire ant)   19
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   21
Atta_cephalotes_v1.1 23
Camponotus_floridanus_v3.3   (Florida carpenter ant)   22
Lucilia_cuprina   (Australian sheep blowfly)   21
Drosophila_grimshawi_1.3 24
Drosophila_willistoni_1.3 22
Drosophila_pseudoobscura_2.13 25
Drosophila_persimilis_1.3 26
Drosophila_suzukii 20
Drosophila_yakuba_1.3 20
Drosophila_simulans_1.3 25
Drosophila_sechellia_1.3 26
Drosophila_melanogaster_76_5   (Fruit fly)   50
Drosophila_erecta_1.3 21
Drosophila_ananassae_1.3 26
Drosophila_virilis_1.2 16
Drosophila_mojavensis_1.3 24
Megaselia_scalaris_22 11
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   22
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   26
Anopheles_darlingi_22   (American malaria mosquito)   26
Anopheles_gambiae_49_3j   (African malaria mosquito)   18
Tribolium_castaneum_3.0   (Red flour beetle)   22
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   18
Acyrthosiphon_pisum_   (Pea aphid)   23
Rhodnius_prolixus_22 24
Daphnia_pulex_   (Common water flea)   60
Strigamia_maritima_22 17
Sarcoptes_scabiei 19
Tetranychus_urticae_   (Two-spotted spider mite)   19
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   30
Pristionchus_pacificus_ 36
Meloidogyne_incognita_   (Southern root-knot nematode)   16
Meloidogyne_hapla_ 13
Onchocerca_volvulus_22 26
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   33
Caenorhabditis_japonica_ 27
Caenorhabditis_brenneri_ 35
Caenorhabditis_remanei_ 21
Caenorhabditis_elegans_76_235   (Roundworm)   30
Caenorhabditis_briggsae_2 22
Trichinella_spiralis_22 18
Hymenolepis_microstoma_ 15
Echinococcus_multilocularis_ 16
Echinococcus_granulosus_ 11
Taenia_solium_   (Pork tapeworm)   18
Schistosoma_mansoni_ 18
Mnemiopsis_leidyi   (Sea walnut)   24
Thelohanellus_kitauei 17
Acropora_digitifera_v1.0 37
Nematostella_vectensis_1.0   (Starlet sea anemone)   35
Hydra_vulgaris 39
Amphimedon_queenslandica 41
Trichoplax_adhaerens_ 29
Proterospongia_sp._ATCC_50818_ 39
Monosiga_brevicollis_ 29
Sphaeroforma_arctica_JP610_ 41
Capsaspora_owczarzaki_ATCC_30864_ 23
Conidiobolus_coronatus_NRRL28638_v1.0 9
Mortierella_verticillata_NRRL_6337_ 19
Phycomyces_blakesleeanus_ 12
Rhizopus_oryzae_RA_99-880_ 27
Mucor_circinelloides_ 14
Rhizomucor_miehei_CAU432_ 25
Malassezia_globosa_CBS_7966_ 46
Sporisorium_reilianum_22 14
Ustilago_maydis_ 15
Mixia_osmundae_IAM_14324_v1.0 18
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 11
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 19
Melampsora_laricis-populina_ 14
Rhodotorula_graminis_WP1_v1.0 12
Sporobolomyces_roseus_IAM_13481_ 7
Microbotryum_violaceum_22 19
Wallemia_sebi_v1.0 9
Sphaerobolus_stellatus_v1.0 30
Piloderma_croceum_F_1598_v1.0 16
Serpula_lacrymans_var._lacrymans_S7.9_ 13
Coniophora_puteana 15
Hydnomerulius_pinastri_v2.0 17
Paxillus_rubicundulus_Ve08.2h10_v1.0 12
Pisolithus_microcarpus_441_v1.0 26
Pisolithus_tinctorius_Marx_270_v1.0 15
Scleroderma_citrinum_Foug_A_v1.0 14
Coprinopsis_cinerea_okayama7_130_v3 14
Pleurotus_ostreatus_   (Oyster mushroom)   11
Amanita_thiersii_Skay4041_v1.0 18
Amanita_muscaria_Koide_v1.0   (Fly agaric)   26
Galerina_marginata_v1.0 19
Hebeloma_cylindrosporum_h7_v2.0 20
Laccaria_bicolor_S238N-H82_ 25
Agaricus_bisporus_var._bisporus_ 18
Schizophyllum_commune_ 16
Stereum_hirsutum_FP-91666_SS1__v1.0 16
Heterobasidion_annosum_ 13
Gloeophyllum_trabeumv1.0 17
Punctularia_strigosozonata_v1.0 20
Sebacina_vermifera_MAFF_305830_v1.0 24
Fomitiporia_mediterranea_v1.0 14
Tulasnella_calospora_AL13/4D_v1.0 19
Postia_placenta_ 27
Wolfiporia_cocos_MD-104_SS10__v1.0 15
Fomitopsis_pinicolav1.0 15
Fomitopsis_pinicola_FP-58527_SS1_v3.0 13
Phanerochaete_chrysosporium_RP-78_2.1 13
Dichomitus_squalens 13
Trametes_versicolor_v1.0 15
Tremella_mesenterica_   (Witches' butter)   16
Daldinia_eschscholzii_EC12_v1.0 14
Apiospora_montagnei_NRRL_25634_v1.0 15
Magnaporthe_poae_ATCC_64411_22 22
Magnaporthe_grisea_70-15_ 19
Podospora_anserina_ 16
Sporotrichum_thermophile_ATCC_42464_ 15
Thielavia_terrestris_NRRL_8126_ 14
Chaetomium_globosum_CBS_148.51_ 15
Neurospora_tetrasperma_ 13
Neurospora_discreta_FGSC_8579_ 12
Neurospora_crassa_OR74A_ 15
Cryphonectria_parasitica_   (Chestnut blight fungus)   14
Verticillium_albo-atrum_VaMs.102_ 15
Verticillium_dahliae_VdLs.17_ 17
Acremonium_alcalophilumv_1.0 12
Glomerella_graminicola_22 15
Fusarium_graminearum_ 13
Nectria_haematococca_mpVI_ 12
Fusarium_oxysporum_f._sp._lycopersici_4286_ 24
Fusarium_verticillioides_7600_ 17
Trichoderma_asperellum_CBS_433.97_v1.0 18
Trichoderma_atroviride_ 14
Trichoderma_citrinoviride_v1.0 14
Trichoderma_reesei_1.2 17
Trichoderma_virens_Gv29-8_ 15
Trichoderma_longibrachiatum_ATCC_18648_v1.0 11
Trichoderma_harzianum_CBS_226.95_v1.0 18
Amorphotheca_resinae_v1.0   (Creosote fungus)   13
Botrytis_cinerea_B05.10_ 21
Sclerotinia_sclerotiorum_ 15
Blumeria_graminis_22 15
Didymella_exigua_CBS_183.55_v1.0 15
Leptosphaeria_maculans_22 15
Setosphaeria_turcica_v1.0 12
Cochliobolus_miyabeanus_ATCC_44560_v1.0 11
Cochliobolus_victoriae_FI3_v1.0 13
Cochliobolus_carbonum_26-R-13_v1.0 14
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   13
Alternaria_brassicicola_ 18
Cochliobolus_lunatus_m118_v2.0 16
Pyrenophora_teres_f._teres_22 15
Pyrenophora_tritici-repentis_ 14
Stagonospora_nodorum_ 19
Mycosphaerella_graminicola_IPO323_ 14
Zasmidium_cellare_ATCC_36951_v1.0 13
Dothistroma_septosporum 15
Septoria_musiva_v1.0 17
Mycosphaerella_fijiensis_CIRAD86_ 13
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 12
Paracoccidioides_brasiliensis_Pb18_ 12
Coccidioides_posadasii_RMSCC_3488_ 18
Coccidioides_immitis_RS_ 21
Ajellomyces_dermatitidis_SLH14081_ 17
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 20
Microsporum_canis_CBS_113480_ 16
Trichophyton_equinum_CBS_127.97_ 17
Trichophyton_verrucosum_HKI_0517_ 13
Arthroderma_benhamiae_CBS_112371_ 14
Trichophyton_tonsurans_CBS_112818_ 16
Trichophyton_rubrum_CBS_118892_ 18
Uncinocarpus_reesii_1704_ 19
Aspergillus_zonatus_v1.0 15
Penicillium_chrysogenum_Wisconsin_54-1255_ 14
Penicillium_chrysogenum_v1.0 16
Aspergillus_acidus_v1.0 11
Aspergillus_fumigatus_Af293 14
Aspergillus_brasiliensis_v1.0 10
Aspergillus_nidulans_FGSC_A4_ 14
Aspergillus_sydowii_v1.0 12
Aspergillus_versicolor_v1.0 10
Aspergillus_glaucus 14
Aspergillus_carbonarius_ITEM_5010_ 16
Neosartorya_fischeri_NRRL_181_ 18
Aspergillus_terreus_NIH2624_ 15
Aspergillus_tubingensis_v1.0 15
Aspergillus_wentii_v1.0 13
Aspergillus_oryzae_RIB40_ 17
Aspergillus_niger_22 15
Aspergillus_niger_ATCC_1015_ 11
Aspergillus_flavus_NRRL3357_ 15
Aspergillus_clavatus_NRRL_1_ 18
Penicillium_marneffei_ATCC_18224_ 14
Tuber_melanosporum_Mel28_22 15
Tuber_melanosporum_Vittad_   (Perigord truffle)   15
Hansenula_polymorpha_v2.0 7
Dekkera_bruxellensis_CBS_2499_v2.0 8
Pichia_membranifaciensv1.0 7
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5
Candida_dubliniensis_CD36_ 7
Candida_tropicalis_MYA-3404_ 12
Candida_parapsilosis_ 11
Candida_albicans_SC5314 12
Lodderomyces_elongisporus_NRRL_YB-4239_ 12
Babjeviella_inositovora_NRRL_Y-12698_v1.0 10
Pichia_stipitis_CBS_6054_ 8
Candida_guilliermondii_ATCC_6260_ 20
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 11
Debaromyces_hansenii 10
Wickerhamomyces_anomalus 12
Pichia_pastoris_GS115_ 10
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 9
Yarrowia_lipolytica_CLIB122 11
Candida_lusitaniae_ATCC_42720_ 10
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 9
Vanderwaltozyma_polyspora_DSM_70294_ 14
Candida_glabrata_CBS138 14
Kluyveromyces_thermotolerans_CBS_6340 13
Lachancea_kluyveri_ 16
Kluyveromyces_waltii 14
Ashbya_gossypii_ATCC_10895_ 11
Zygosaccharomyces_rouxii_ 12
Saccharomyces_mikatae_MIT 28
Saccharomyces_paradoxus_MIT 19
Saccharomyces_cerevisiae_76   (Baker's yeast)   13
Saccharomyces_bayanus_MIT 22
Kluyveromyces_lactis 8
Schizosaccharomyces_cryophilus_OY26_22 11
Schizosaccharomyces_octosporus_yFS286_ 15
Schizosaccharomyces_japonicus_yFS275_ 14
Schizosaccharomyces_pombe   (Fission yeast)   13
Catenaria_anguillulae_PL171_v1.0 21
Allomyces_macrogynus_ATCC_38327_ 38
Spizellomyces_punctatus_DAOM_BR117_ 29
Dictyostelium_discoideum 8
Dictyostelium_purpureum_ 7
Entamoeba_dispar_1.2 19
Entamoeba_invadens_1.2 23
Entamoeba_histolytica_1 17
Selaginella_moellendorffii_ 55
Pinus_taeda   (Loblolly pine)   43
Picea_abies   (Norway spruce)   32
Eucalyptus_grandis_v201   (Rose gum)   66
Theobroma_cacao_B97-61/B2_v1   (Cacao)   38
Gossypium_raimondii_v221 150
Citrus_clementina_v165 46
Citrus_sinensis_v154   (Sweet orange)   80
Thellungiella_halophila_v173 56
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   50
Capsella_rubella_v183 54
Arabidopsis_lyrata_   (Lyrate rockcress)   43
Arabidopsis_thaliana_10   (Thale cress)   59
Carica_papaya_   (Papaya)   46
Medicago_truncatula_   (Barrel medic)   71
Phaseolus_vulgaris_v186   (French bean)   73
Glycine_max_v109   (Soybean)   89
Cucumis_sativus_v122   (Cucumber)   57
Fragaria_vesca_   (Wild strawberry)   31
Malus_domestica_v196   (Apple)   104
Prunus_persica_v139   (Peach)   39
Linum_usitatissimum_v200   (Flax)   60
Manihot_esculenta_v147   (Cassava)   64
Populus_trichocarpa_v156   (Black cottonwood)   59
Vitis_vinifera_   (Wine grape)   32
Mimulus_guttatus_v140   (Spotted monkey flower)   36
Solanum_lycopersicum_v.2.3   (Tomato)   35
Solanum_tuberosum_   (Potato)   51
Actinidia_chinensis_Hongyang_ 73
Aquilegia_coerulea_v195 69
Triticum_urartu_22 39
Triticum_aestivum_22   (Bread wheat)   126
Aegilops_tauschii_22 57
Brachypodium_distachyon_   (Stiff brome)   61
Oryza_barthii_22   (African wild rice)   85
Oryza_meridionalis_22 101
Oryza_glumaepatula_22 77
Oryza_glaberrima   (African rice)   43
Oryza_punctata_22 68
Oryza_nivara_22 97
Oryza_brachyantha_22   (Malo sina)   48
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   96
Oryza_sativa_v193   (Rice)   95
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   68
Panicum_virgatum_v202   (Switchgrass)   114
Setaria_italica_v164   (Foxtail millet)   60
Zea_mays_subsp._mays_   (Maize)   112
Zea_mays_v181   (Maize)   123
Sorghum_bicolor_   (Sorghum)   52
Musa_balbisiana   (Balbis banana)   61
Musa_acuminata_22   (Wild Malaysian banana)   71
Amborella_trichopoda_22 35
Physcomitrella_patens 39
Coccomyxa_subellipsoidea_sp._C-169_v2 15
Asterochloris_sp._Cgr/DA1pho_v1.0 10
Chlorella_variabilis_sp._NC64A_ 14
Chlorella_vulgaris_ 20
Volvox_carteri_f._nagariensis_ 15
Volvox_carteri_v199 17
Chlamydomonas_reinhardtii_4.0 21
Ostreococcus_sp._RCC809_ 9
Ostreococcus_lucimarinus_CCE9901_ 18
Ostreococcus_tauri_ 11
Bathycoccus_prasinos_ 18
Micromonas_sp._RCC299_ 18
Micromonas_pusilla_CCMP1545_v3.0 19
Cyanidioschyzon_merolae_strain_10D_22 19
Cyanidioschyzon_merolae 19
Porphyridium_purpureum_02_2012 21
Thecamonas_trahens_ATCC_50062_ 20
Bigelowiella_natans_CCMP2755_22 42
Giardia_lamblia_2.3 15
Cyanophora_paradoxa_ 38
Leishmania_mexicana_2.4 20
Leishmania_major_strain_Friedlin_ 23
Leishmania_infantum_JPCM5_2.4 22
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 19
Trypanosoma_vivax_ 17
Trypanosoma_cruzi_strain_CL_Brener 23
Trypanosoma_congolense_2.4 25
Trypanosoma_brucei_gambiense_v4.1 21
Trypanosoma_brucei_TREU927_v4.1 20
Ectocarpus_siliculosus 37
Aureococcus_anophagefferens_ 21
Albugo_laibachii_22 27
Pythium_iwayamai_DAOM_BR242034_22 32
Pythium_arrhenomanes_ATCC_12531_22 41
Pythium_ultimum_v1.7-2 38
Pythium_aphanidermatum_DAOM_BR444_22 29
Pythium_irregulare_DAOM_BR486_22 28
Pythium_vexans_DAOM_BR484_22 25
Phytophthora_ramorum_1.1   (Sudden oak death agent)   34
Phytophthora_sojae_1.1 37
Phytophthora_infestans_T30-4_ 30
Phytophthora_capsici_ 24
Hyaloperonospora_arabidopsidis_22 26
Phaeodactylum_tricornutumCCAP_1055/1 22
Fragilariopsis_cylindrus 28
Thalassiosira_pseudonana_CCMP1335 29
Perkinsus_marinus_ATCC_50983_ 37
Paramecium_tetraurelia_ 39
Tetrahymena_thermophila_SB210_1_ 18
Ichthyophthirius_multifiliis_strain_G5_ 20
Cryptosporidium_hominis 7
Cryptosporidium_muris 7
Cryptosporidium_parvum_Iowa_II 5
Neospora_caninum 12
Toxoplasma_gondii_VEG 16
Toxoplasma_gondii_ME49 16
Toxoplasma_gondii_GT1 12
Babesia_bovis_T2Bo_ 30
Theileria_parva__ 7
Theileria_annulata 5
Plasmodium_falciparum_3D7_ 7
Plasmodium_vivax_SaI-1_7.0 12
Plasmodium_knowlesi_strain_H_ 9
Plasmodium_yoelii_ssp._yoelii_1_ 12
Plasmodium_chabaudi_ 5
Plasmodium_berghei_ANKA_ 7
Symbiodinium_minutum_clade_B1_v1.2 65
Naegleria_gruberi_ 30
Trichomonas_vaginalis_ 123
Guillardia_theta_CCMP2712_v1.0_ 56
Emiliania_huxleyi_CCMP1516_ 37
Pseudanabaena_sp._PCC_7367 0
Acaryochloris_marina_MBIC11017 1
Synechocystis_sp._PCC_6803 0
Thermosynechococcus_sp._NK55 1
Thermosynechococcus_elongatus_BP-1 2
Synechococcus_sp._PCC_6312 1
Microcoleus_sp._PCC_7113 2
Trichodesmium_erythraeum_IMS101 1
Cyanothece_sp._PCC_8802 0
Halothece_sp._PCC_7418 0
Microcystis_aeruginosa_NIES-843 0
Gloeobacter_violaceus_PCC_7421 1
Rivularia_sp._PCC_7116 5
Calothrix_sp._PCC_7507 0
Anabaena_variabilis_ATCC_29413 0
Nostoc_sp._PCC_7107 0
Nostoc_punctiforme_PCC_73102 0
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Anabaena_sp._90 1
Mycoplasma_bovis_HB0801 0
Mycoplasma_arthritidis_158L3-1 0
Mycoplasma_synoviae_53 0
Conexibacter_woesei_DSM_14684 1
Atopobium_parvulum_DSM_20469 1
Coriobacterium_glomerans_PW2 1
Nakamurella_multipartita_DSM_44233 1
Kineococcus_radiotolerans_SRS30216 1
Catenulispora_acidiphila_DSM_44928 2
Stackebrandtia_nassauensis_DSM_44728 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1
Streptosporangium_roseum_DSM_43021 1
Kitasatospora_setae_KM-6054 4
Streptomyces_sp._PAMC26508 2
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 2
Streptomyces_bingchenggensis_BCW-1 4
Streptomyces_violaceusniger_Tu_4113 1
Streptomyces_avermitilis_MA-4680 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_scabiei_87.22 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Saccharomonospora_viridis_DSM_43017 1
Saccharopolyspora_erythraea_NRRL_2338 0
Amycolatopsis_mediterranei_U32 0
Kribbella_flavida_DSM_17836 0
Salinispora_tropica_CNB-440 1
Verrucosispora_maris_AB-18-032 2
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 2
Actinoplanes_sp._N902-109 1
Actinoplanes_sp._SE50/110 0
Actinoplanes_missouriensis_431 2
Rhodococcus_equi_103S 1
Rhodococcus_opacus_B4 0
Rhodococcus_erythropolis_PR4 1
Mycobacterium_sp._JLS 1
Mycobacterium_intracellulare_ATCC_13950 1
Mycobacterium_avium_104 1
Mycobacterium_vanbaalenii_PYR-1 1
Arthrobacter_chlorophenolicus_A6 0
Kocuria_rhizophila_DC2201 1
Bifidobacterium_bifidum_S17 0
Dehalococcoides_ethenogenes_195 1
Anaerolinea_thermophila_UNI-1 1
Herpetosiphon_aurantiacus_DSM_785 0
Roseiflexus_sp._RS-1 0
Roseiflexus_castenholzii_DSM_13941 0
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 0
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 0
Thermus_scotoductus_SA-01 0
Acidaminococcus_fermentans_DSM_20731 0
Megamonas_hypermegale 1
Clostridium_clariflavum_DSM_19732 1
Ethanoligenens_harbinense_YUAN-3 2
butyrate-producing_bacterium_SM4/1 0
Pelotomaculum_thermopropionicum_SI 1
Desulfosporosinus_acidiphilus_SJ4 1
Desulfosporosinus_orientis_DSM_765 1
Desulfotomaculum_reducens_MI-1 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 1
Desulfotomaculum_ruminis_DSM_2154 1
Eubacterium_eligens_ATCC_27750 0
Eubacterium_limosum_KIST612 0
Clostridium_saccharolyticum_WM1 0
Clostridium_lentocellum_DSM_5427 1
Alkaliphilus_metalliredigens_QYMF 0
Clostridium_ljungdahlii_DSM_13528 2
Clostridium_kluyveri_DSM_555 0
Clostridium_beijerinckii_NCIMB_8052 1
Clostridium_cellulovorans_743B 0
Mahella_australiensis_50-1_BON 0
Caldicellulosiruptor_lactoaceticus_6A 1
Caldicellulosiruptor_kristjanssonii_177R1B 1
Thermoanaerobacterium_xylanolyticum_LX-11 1
Thermoanaerobacter_italicus_Ab9 1
Thermoanaerobacter_wiegelii_Rt8.B1 0
Acetohalobium_arabaticum_DSM_5501 1
Tetragenococcus_halophilus_NBRC_12172 0
Enterococcus_hirae_ATCC_9790 0
Enterococcus_faecalis_62 1
Leuconostoc_sp._C2 0
Leuconostoc_kimchii_IMSNU_11154 0
Lactobacillus_casei_ATCC_334 1
Lactobacillus_johnsonii_FI9785 0
Lactococcus_garvieae_ATCC_49156 0
Streptococcus_sp._I-P16 0
Streptococcus_gallolyticus_UCN34 0
Streptococcus_equi_subsp._equi_4047 0
Streptococcus_pyogenes_str._Manfredo 0
Brevibacillus_brevis_NBRC_100599 1
Paenibacillus_sp._JDR-2 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 0
Listeria_innocua_Clip11262 0
Geobacillus_thermoglucosidasius_C56-YS93 1
Bacillus_sp._1NLA3E 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_halodurans_C-125 0
Bacillus_weihenstephanensis_KBAB4 0
Bacillus_thuringiensis_str._Al_Hakam 0
Bacillus_cereus_03BB102 0
Bacillus_clausii_KSM-K16 0
Macrococcus_caseolyticus_JCSC5402 0
Staphylococcus_pseudintermedius_HKU10-03 1
Staphylococcus_lugdunensis_HKU09-01 0
Staphylococcus_haemolyticus_JCSC1435 0
Staphylococcus_aureus_subsp._aureus_JH1 0
Candidatus_Cloacamonas_acidaminovorans 1
Gemmatimonas_aurantiaca_T-27 5
Chlorobium_chlorochromatii_CaD3 2
Chloroherpeton_thalassium_ATCC_35110 0
Haliscomenobacter_hydrossis_DSM_1100 0
Saprospira_grandis_str._Lewin 1
Niastella_koreensis_GR20-10 3
Chitinophaga_pinensis_DSM_2588 3
Rhodothermus_marinus_DSM_4252 0
Flexibacter_litoralis_DSM_6794 0
Candidatus_Amoebophilus_asiaticus_5a2 1
Cyclobacterium_marinum_DSM_745 0
Fibrella_aestuarina 0
Cytophaga_hutchinsonii_ATCC_33406 0
Spirosoma_linguale_DSM_74 0
Runella_slithyformis_DSM_19594 0
Tannerella_forsythia_ATCC_43037 0
Paludibacter_propionicigenes_WB4 1
Odoribacter_splanchnicus_DSM_20712 3
Bacteroides_sp._CF50 3
Porphyromonas_gingivalis_ATCC_33277 1
Bacteroides_thetaiotaomicron_VPI-5482 4
Pedobacter_heparinus_DSM_2366 1
Flavobacterium_johnsoniae_UW101 1
Parachlamydia_acanthamoebae_UV-7 1
Phycisphaera_mikurensis_NBRC_102666 2
Isosphaera_pallida_ATCC_43644 2
Planctomyces_brasiliensis_DSM_5305 7
Planctomyces_limnophilus_DSM_3776 4
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 2
Akkermansia_muciniphila_ATCC_BAA-835 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1
Spirochaeta_smaragdinae_DSM_11293 0
Treponema_primitia_ZAS-2 1
Thermodesulfatator_indicus_DSM_15286 2
Marinitoga_piezophila_KA3 1
Kosmotoga_olearia_TBF_19.5.1 1
Fervidobacterium_pennivorans_DSM_9078 0
Thermosipho_melanesiensis_BI429 0
Sulfurihydrogenibium_sp._YO3AOP1 1
Candidatus_Solibacter_usitatus_Ellin6076 2
Granulicella_mallensis_MP5ACTX8 0
Candidatus_Nitrospira_defluvii 1
candidate_division_SR1_bacterium_RAAC1_SR1_1 0
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 1
Helicobacter_cinaedi_PAGU611 1
Desulfomonile_tiedjei_DSM_6799 0
Syntrophobacter_fumaroxidans_MPOB 0
Desulfotalea_psychrophila_LSv54 0
Desulfobulbus_propionicus_DSM_2032 0
Desulfatibacillum_alkenivorans_AK-01 2
Desulfococcus_oleovorans_Hxd3 1
Desulfovibrio_magneticus_RS-1 1
Geobacter_daltonii_FRC-32 3
Geobacter_sp._M21 2
Geobacter_uraniireducens_Rf4 1
Geobacter_lovleyi_SZ 1
Geobacter_bemidjiensis_Bem 2
Geobacter_sulfurreducens_KN400 2
Geobacter_metallireducens_GS-15 2
Pelobacter_propionicus_DSM_2379 1
Pelobacter_carbinolicus_DSM_2380 2
Haliangium_ochraceum_DSM_14365 1
Sorangium_cellulosum_'So_ce_56' 13
Anaeromyxobacter_sp._Fw109-5 0
Anaeromyxobacter_dehalogenans_2CP-1 1
Stigmatella_aurantiaca_DW4/3-1 7
Corallococcus_coralloides_DSM_2259 4
Myxococcus_xanthus_DK_1622 3
Myxococcus_fulvus_HW-1 5
Burkholderia_phytofirmans_PsJN 1
Ralstonia_eutropha_JMP134 1
Cupriavidus_necator_N-1 1
Ralstonia_eutropha_H16 1
Ralstonia_solanacearum_CFBP2957 0
Burkholderia_sp._CCGE1002 1
Burkholderia_gladioli_BSR3 0
Variovorax_paradoxus_S110 0
Comamonas_testosteroni_CNB-2 1
Janthinobacterium_sp._Marseille 1
Taylorella_asinigenitalis_MCE3 0
Bordetella_pertussis_Tohama_I 1
Nitrosomonas_sp._Is79A3 1
Gallionella_capsiferriformans_ES-2 0
Methylobacterium_nodulans_ORS_2060 1
Methylobacterium_radiotolerans_JCM_2831 1
Rhizobium_etli_CIAT_652 1
Rhizobium_leguminosarum_bv._viciae_3841 0
Agrobacterium_radiobacter_K84 0
Rhodomicrobium_vannielii_ATCC_17100 0
Rhodopseudomonas_palustris_BisA53 0
Nitrobacter_hamburgensis_X14 1
Hahella_chejuensis_KCTC_2396 0
Methylomonas_methanica_MC09 0
Methylococcus_capsulatus_str._Bath 1
Xanthomonas_axonopodis_pv._citri_str._306 0
Xanthomonas_oryzae_pv._oryzae_PXO99A 0
Nitrosococcus_halophilus_Nc4 0
Proteus_mirabilis_HI4320 0
Yersinia_pseudotuberculosis_IP_31758 1
Pectobacterium_wasabiae_WPP163 0
Pectobacterium_sp._SCC3193 0
Klebsiella_variicola_At-22 0
Pseudomonas_mendocina_ymp 0
Francisella_cf._novicida_3523 2
Pyrolobus_fumarii_1A 0
halophilic_archaeon_DL31 0
Methanosaeta_harundinacea_6Ac 1
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 3
Methanosarcina_mazei_Go1 3
Methanosarcina_barkeri_str._Fusaro 3
Methanospirillum_hungatei_JF-1 0
Methanocorpusculum_labreanum_Z 0
Methanoplanus_petrolearius_DSM_11571 0
Methanoculleus_bourgensis_MS2 1
Methanoculleus_marisnigri_JR1 0
Thermococcus_gammatolerans_EJ3 1
Pyrococcus_yayanosii_CH1 1
Pyrococcus_furiosus_COM1 2
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 0
Natrinema_sp._J7-2 2
Natrialba_magadii_ATCC_43099 1
Halorubrum_lacusprofundi_ATCC_49239 1
Halogeometricum_borinquense_DSM_11551 3
Haloferax_mediterranei_ATCC_33500 0
Haloferax_volcanii_DS2 0
Halomicrobium_mukohataei_DSM_12286 0
Halorhabdus_utahensis_DSM_12940 0
Haloarcula_marismortui_ATCC_43049 1
Halalkalicoccus_jeotgali_B3 1
Methanotorris_igneus_Kol_5 2
Methanocaldococcus_vulcanius_M7 1
Methanothermococcus_okinawensis_IH1 0
Methanococcus_maripaludis_C5 1
Methanococcus_voltae_A3 1
Methanobrevibacter_ruminantium_M1 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   52
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   43
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   20
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   34
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   25
Cryptococcus_neoformans_var._grubii_H99_ 18
Cryptococcus_neoformans_B-3501A_ 16
Cryptococcus_neoformans_JEC21_ 16
Paracoccidioides_brasiliensis_Pb01_ 12
Paracoccidioides_brasiliensis_Pb03_ 14
Coccidioides_posadasii_str._Silveira_ 20
Coccidioides_immitis_RMSCC_3703_ 22
Coccidioides_immitis_RMSCC_2394_ 20
Coccidioides_immitis_H538.4_ 27
Ajellomyces_dermatitidis_ER-3_ 17
Histoplasma_capsulatum_H143 22
Histoplasma_capsulatum_H88 18
Histoplasma_capsulatum_G186AR 15
Aspergillus_fumigatus_A1163_ 15
Candida_albicans_WO-1_ 5
Saccharomyces_cerevisiae_UC5 11
Saccharomyces_cerevisiae_PW5 12
Saccharomyces_cerevisiae_FL100 7
Saccharomyces_cerevisiae_CLIB324 3
Saccharomyces_cerevisiae_CBS7960 10
Saccharomyces_cerevisiae_YJM269 14
Saccharomyces_cerevisiae_T7 15
Saccharomyces_cerevisiae_FostersB 22
Saccharomyces_cerevisiae_FostersO 19
Saccharomyces_cerevisiae_VL3 20
Saccharomyces_cerevisiae_Vin13 24
Saccharomyces_cerevisiae_LalvinQA23 29
Saccharomyces_cerevisiae_AWRI796 19
Saccharomyces_cerevisiae_Sigma1278b 15
Saccharomyces_cerevisiae_W303 14
Saccharomyces_cerevisiae_JAY291 12
Saccharomyces_cerevisiae_AWRI1631 7
Saccharomyces_cerevisiae_YPS163 3
Saccharomyces_cerevisiae_M22 4
Saccharomyces_cerevisiae_T73 5
Saccharomyces_cerevisiae_CLIB215 12
Saccharomyces_cerevisiae_Y10 11
Saccharomyces_cerevisiae_YJM789_ 14
Saccharomyces_cerevisiae_YJM789 14
Saccharomyces_cerevisiae_RM11-1a 16
Saccharomyces_cerevisiae_RM11-1a_ 12
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   13
Schizosaccharomyces_pombe_972h-_ 13
Batrachochytrium_dendrobatidis_JEL423_ 22
Batrachochytrium_dendrobatidis_JAM81_ 22
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   33
Hordeum_vulgare_22   (Domesticated barley)   155
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   78
Trypanosoma_brucei_Lister_427_v4.1 19
Neospora_caninum_Nc-Liverpool_6.2 12
Plasmodium_falciparum_HB3_ 9
Plasmodium_falciparum_Dd2_ 11
Chamaesiphon_minutus_PCC_6605 2
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Crinalium_epipsammum_PCC_9333 0
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 4
Arthrospira_platensis_NIES-39 4
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 0
Cyanothece_sp._PCC_8801 0
Cyanobacterium_aponinum_PCC_10605 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 0
Stanieria_cyanosphaera_PCC_7437 0
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Cylindrospermum_stagnale_PCC_7417 1
Anabaena_cylindrica_PCC_7122 1
Mycoplasma_bovis_Hubei-1 0
Gordonibacter_pamelaeae_7-10-1-b 0
Frankia_sp._EuI1c 1
Streptomyces_rapamycinicus_NRRL_5491 1
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 2
Streptomyces_venezuelae_ATCC_10712 0
Streptomyces_collinus_Tu_365 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 0
Amycolatopsis_orientalis_HCCB10007 1
Actinoplanes_friuliensis_DSM_7358 1
Nocardia_brasiliensis_ATCC_700358 0
Mycobacterium_sp._MOTT36Y 1
Mycobacterium_yongonense_05-1390 1
Mycobacterium_intracellulare_MOTT-64 1
Mycobacterium_indicus_pranii_MTCC_9506 1
Mycobacterium_intracellulare_MOTT-02 1
Mycobacterium_avium_subsp._paratuberculosis_MAP4 1
Mycobacterium_avium_subsp._paratuberculosis_K-10 1
Mycobacterium_canettii_CIPT_140070017 0
Bifidobacterium_longum_DJO10A 0
Bifidobacterium_longum_subsp._longum_F8 0
Chthonomonas_calidirosea_T49 1
Thermus_thermophilus_HB8 0
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 0
Desulfosporosinus_meridiei_DSM_13257 1
Coprococcus_catus_GD/7 0
Roseburia_intestinalis_XB6B4 1
Clostridium_autoethanogenum_DSM_10061 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1
Clostridium_kluyveri_NBRC_12016 0
Clostridium_pasteurianum_BC1 0
Clostridium_botulinum_E3_str._Alaska_E43 1
Clostridium_botulinum_Ba4_str._657 1
Clostridium_botulinum_A2_str._Kyoto 0
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1
Carnobacterium_maltaromaticum_LMA28 1
Enterococcus_faecalis_str._Symbioflor_1 0
Enterococcus_faecalis_D32 1
Enterococcus_faecalis_OG1RF 1
Enterococcus_faecalis_V583 0
Lactobacillus_paracasei_subsp._paracasei_8700:2 1
Lactobacillus_casei_LOCK919 0
Lactobacillus_casei_W56 0
Lactobacillus_casei_LC2W 0
Lactobacillus_casei_BD-II 0
Lactobacillus_casei_BL23 0
Lactobacillus_rhamnosus_GG 1
Lactobacillus_rhamnosus_GG 1
Lactobacillus_plantarum_16 0
Lactobacillus_plantarum_WCFS1 0
Lactococcus_garvieae_Lg2 0
Lactococcus_lactis_subsp._lactis_IO-1 0
Streptococcus_constellatus_subsp._pharyngis_C1050 1
Streptococcus_constellatus_subsp._pharyngis_C818 1
Streptococcus_constellatus_subsp._pharyngis_C232 1
Streptococcus_intermedius_C270 0
Streptococcus_anginosus_C238 0
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 0
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 1
Streptococcus_iniae_SF1 0
Streptococcus_pyogenes_A20 0
Streptococcus_pyogenes_MGAS2096 0
Streptococcus_pyogenes_MGAS9429 0
Streptococcus_pyogenes_NZ131 0
Streptococcus_pyogenes_MGAS10394 0
Streptococcus_pyogenes_MGAS315 0
Streptococcus_pyogenes_SSI-1 0
Streptococcus_pyogenes_M1_476 0
Streptococcus_pyogenes_MGAS5005 0
Streptococcus_pneumoniae_SPNA45 0
Streptococcus_pneumoniae_SPN994039 0
Streptococcus_pneumoniae_SPN994038 0
Streptococcus_pneumoniae_SPN034183 0
Streptococcus_pneumoniae_OXC141 0
Streptococcus_pneumoniae_JJA 0
Streptococcus_pneumoniae_670-6B 0
Streptococcus_agalactiae_09mas018883 0
Streptococcus_suis_T15 1
Streptococcus_suis_SC070731 0
Streptococcus_suis_SS12 0
Streptococcus_suis_D12 0
Paenibacillus_sp._Y412MC10 0
Geobacillus_sp._C56-T3 1
Geobacillus_sp._Y4.1MC1 1
Geobacillus_sp._Y412MC52 0
Bacillus_amyloliquefaciens_XH7 0
Bacillus_amyloliquefaciens_TA208 0
Bacillus_subtilis_XF-1 0
Bacillus_subtilis_BSn5 0
Bacillus_subtilis_subsp._natto_BEST195 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 0
Bacillus_toyonensis_BCT-7112 0
Bacillus_thuringiensis_HD-771 2
Bacillus_thuringiensis_MC28 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 0
Bacillus_thuringiensis_YBT-1518 3
Bacillus_thuringiensis_Bt407 0
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 0
Bacillus_thuringiensis_BMB171 0
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 0
Bacillus_cereus_FRI-35 0
Bacillus_cereus_AH820 0
Bacillus_cereus_AH187 0
Bacillus_cereus_G9842 1
Bacillus_cereus_Q1 0
Bacillus_cereus_NC7401 0
Bacillus_cereus_ATCC_14579 1
Bacillus_cereus_ATCC_10987 0
Bacillus_anthracis_str._'Ames_Ancestor' 0
Bacillus_anthracis_str._Sterne 0
Bacillus_anthracis_str._Ames 0
Staphylococcus_aureus_subsp._aureus_MSHR1132 0
Staphylococcus_pasteuri_SP1 0
Staphylococcus_lugdunensis_N920143 0
Staphylococcus_aureus_CA-347 0
Staphylococcus_aureus_Bmb9393 0
Staphylococcus_aureus_04-02981 0
Staphylococcus_aureus_RF122 0
Staphylococcus_aureus_subsp._aureus_Z172 0
Staphylococcus_aureus_subsp._aureus_6850 0
Staphylococcus_aureus_subsp._aureus_SA957 0
Staphylococcus_aureus_subsp._aureus_CN1 0
Staphylococcus_aureus_subsp._aureus_11819-97 0
Staphylococcus_aureus_subsp._aureus_M013 0
Staphylococcus_aureus_subsp._aureus_T0131 0
Staphylococcus_aureus_subsp._aureus_LGA251 0
Staphylococcus_aureus_subsp._aureus_ECT-R_2 0
Staphylococcus_aureus_subsp._aureus_JKD6159 0
Staphylococcus_aureus_subsp._aureus_ED98 0
Staphylococcus_aureus_subsp._aureus_TW20 0
Staphylococcus_aureus_subsp._aureus_TCH60 0
Staphylococcus_aureus_subsp._aureus_str._JKD6008 0
Staphylococcus_aureus_subsp._aureus_71193 0
Staphylococcus_aureus_subsp._aureus_str._Newman 0
Staphylococcus_aureus_subsp._aureus_Mu3 0
Staphylococcus_aureus_subsp._aureus_JH9 0
Staphylococcus_aureus_subsp._aureus_MRSA252 0
Staphylococcus_aureus_subsp._aureus_N315 0
Staphylococcus_aureus_subsp._aureus_Mu50 0
Staphylococcus_aureus_subsp._aureus_NCTC_8325 0
Rhodothermus_marinus_SG0.5JP17-172 0
Echinicola_vietnamensis_DSM_17526 1
Emticicia_oligotrophica_DSM_17448 0
Porphyromonas_gingivalis_TDC60 1
Porphyromonas_gingivalis_W83 1
Alistipes_shahii_WAL_8301 2
Bacteroides_xylanisolvens_XB1A 3
Bacteroides_fragilis_638R 3
Nonlabens_dokdonensis_DSW-6 0
Singulisphaera_acidiphila_DSM_18658 5
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1
Treponema_pedis_str._T_A4 1
Helicobacter_pylori_G27 1
Desulfocapsa_sulfexigens_DSM_10523 1
Desulfobacula_toluolica_Tol2 0
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Desulfovibrio_desulfuricans_ND132 0
Geobacter_sp._M18 3
Geobacter_sulfurreducens_PCA 2
Sorangium_cellulosum_So0157-2 6
Anaeromyxobacter_sp._K 2
Anaeromyxobacter_dehalogenans_2CP-C 0
Myxococcus_stipitatus_DSM_14675 7
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Burkholderia_sp._CCGE1003 1
Burkholderia_sp._CCGE1001 0
Variovorax_paradoxus_B4 1
Bordetella_pertussis_CS 1
Bordetella_parapertussis_18323 1
Bordetella_bronchiseptica_MO149 1
Acetobacter_pasteurianus_386B 0
Hyphomicrobium_nitrativorans_NL23 1
Rhodopseudomonas_palustris_BisB5 0
Vibrio_nigripulchritudo_VibrioScope 1
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_pv._citrumelo_F1 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Xanthomonas_oryzae_pv._oryzae_KACC_10331 0
Xanthomonas_campestris_pv._raphani_756C 0
Proteus_mirabilis_BB2000 0
Pantoea_ananatis_LMG_5342 0
Cronobacter_sakazakii_ATCC_BAA-894 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 0
Escherichia_coli_O7:K1_str._CE10 1
Escherichia_coli_IAI39 1
Escherichia_coli_SMS-3-5 1
Enterobacter_cloacae_SCF1 0
Enterobacter_cloacae_subsp._cloacae_ENHKU01 0
Pseudomonas_syringae_pv._phaseolicola_1448A 0
Acinetobacter_baumannii_BJAB07104 1
Acinetobacter_baumannii_MDR-TJ 1
Acinetobacter_baumannii_MDR-ZJ06 1
Acinetobacter_junii__SH205 0
Francisella_cf._novicida_Fx1 2
Methanomethylovorans_hollandica_DSM_15978 1
Methanosarcina_mazei_Tuc01 1
Pyrococcus_sp._NA2 1
Pyrococcus_furiosus_DSM_3638 2
Halovivax_ruber_XH-70 1
Natrinema_pellirubrum_DSM_15624 2
Natronococcus_occultus_SP4 1
Natronobacterium_gregoryi_SP2 1
Natronomonas_moolapensis_8.8.11 0
Methanococcus_maripaludis_X1 2
Methanococcus_maripaludis_C6 0
Methanococcus_maripaludis_C7 1
Methanococcus_maripaludis_S2 1
Methanobacterium_sp._SWAN-1 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   35
Pan_troglodytes_69_2.1.4   (Chimpanzee)   28
Gorilla_gorilla_69_3.1   (Western gorilla)   37
Pongo_abelii_69_2   (Sumatran orangutan)   33
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   34
Macaca_mulatta_69_1   (Rhesus monkey)   37
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   36
Otolemur_garnettii_69_3   (Small-eared galago)   40
Microcebus_murinus_69_1   (Gray mouse lemur)   32
Rattus_norvegicus_69_3.4   (Norway rat)   39
Mus_musculus_69_38   (House mouse)   34
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   39
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   46
Cavia_porcellus_69_3   (Domestic guinea pig)   36
Oryctolagus_cuniculus_69_2   (Rabbit)   36
Ochotona_princeps_69   (American pika)   31
Tupaia_belangeri_69   (Northern tree shrew)   30
Sus_scrofa_69_10.2   (Pig)   47
Bos_taurus_69_3.1   (Cattle)   37
Vicugna_pacos_69_1   (Alpaca)   24
Tursiops_truncatus_69_1   (Bottlenose dolphin)   32
Mustela_putorius_furo_69_1.0   (Domestic ferret)   45
Ailuropoda_melanoleuca_69_1   (Giant panda)   43
Canis_familiaris_69_3.1   (Dog)   38
Felis_catus_69   (Domestic cat)   34
Equus_caballus_69_2   (Horse)   39
Myotis_lucifugus_69_2.0   (Little brown bat)   31
Pteropus_vampyrus_69_1   (Large flying fox)   37
Sorex_araneus_69_1   (European shrew)   33
Erinaceus_europaeus_69   (Western European hedgehog)   34
Procavia_capensis_69_1   (Cape rock hyrax)   33
Loxodonta_africana_69_3   (African savanna elephant)   42
Echinops_telfairi_69   (Small Madagascar hedgehog)   27
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   31
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   21
Macropus_eugenii_69_1.0   (Tammar wallaby)   26
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   34
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   34
Ornithorhynchus_anatinus_69_5   (Platypus)   44
Petromyzon_marinus_69_7.0   (Sea lamprey)   26
Meleagris_gallopavo_69_2   (Turkey)   34
Gallus_gallus_69_2   (Chicken)   30
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   31
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   38
Anolis_carolinensis_69_2.0   (Green anole)   36
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   31
Latimeria_chalumnae_69_1   (Coelacanth)   44
Gadus_morhua_69_1   (Atlantic cod)   39
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   35
Takifugu_rubripes_69_4   (Torafugu)   33
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   34
Oryzias_latipes_69_1   (Japanese medaka)   30
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   38
Oreochromis_niloticus_69_1.0   (Nile tilapia)   28
Danio_rerio_69_9   (Zebrafish)   42
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   13
Ciona_intestinalis_69   (Vase tunicate)   24
Drosophila_melanogaster_69_5   (Fruit fly)   21
Caenorhabditis_elegans_69_215   (Roundworm)   19
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   13
Arabidopsis_thaliana_10   (Thale cress)   52

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   215
Homo_sapiens__(NCBI_version)   (Human)   83
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   36
Heliconius_numata__(Incomplete) 3
Loa_loa_v3.3_(Request)   (Eye worm)   29
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   35
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   18
Moniliophthora_perniciosa_FA553__(Genome_survey) 13
Encephalitozoon_intestinalis__(endoparasite) 10
Encephalitozoon_cuniculi_(endoparasite) 11
Lotus_japonicus__(Early_assembly) 49
Malus_x_domestica_(Duplicate)   (Apple)   104
Ricinus_communis__(Early_assembly)   (Castor bean)   35
Nicotiana_benthamiana_0.4.4_(Early_draft) 101
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   35
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   35
Phoenix_dactylifera__(Early_draft)   (Date palm)   35
Guillardia_theta_(nucleomorph) 1
NCBI_plasmid_sequences_(Plasmids) 9
Core_Eukaryotic_Genes_458_(CEGMA) 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 107
NCBI_viral_sequences_(Viral) 10
Protozoadb_2010_08_(Protozoadb) 686
PDB_chains_(SCOP_1.75)_(PDB) 4
STRING_v9.0.5_(STRING) 3139
UniProt__viral_sequences_(Viral) 10
Uniprot_2018_03_genome 134553
Protein_Data_Bank_(all_PDB_sequenc) 27
NCBI_2017_08_genome 44894
TargetDB__(Targets) 72

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.