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  Home > SCOP hierarchy > Domain combination - _gap_,56112,81837,_gap_,50978

Domain combinations for _gap_,56112,81837,_gap_,50978 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56112 - Protein kinase-like (PK-like)
81837 - BEACH domain
50978 - WD40 repeat-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_76_3.1   (Western gorilla)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1
Papio_anubis_76   (Olive baboon)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Mus_musculus_76_38   (House mouse)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ovis_aries_76_3.1   (Sheep)   1
Canis_familiaris_76_3.1   (Dog)   1
Felis_catus_76_6.2   (Domestic cat)   1
Loxodonta_africana_76_3   (African savanna elephant)   1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Gallus_gallus_76_4   (Chicken)   1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1
Poecilia_formosa_76   (Amazon molly)   1
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   2
Octopus_bimaculoides_280 1
Crassostrea_gigas_22   (Pacific oyster)   1
Lottia_gigantea_   (Owl limpet)   1
Helobdella_robusta_ 1
Capitella_sp._I_ 1
Nasonia_vitripennis_   (Jewel wasp)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1
Linepithema_humile_v1.1   (Argentine ant)   1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   1
Drosophila_pseudoobscura_2.13 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1
Acyrthosiphon_pisum_   (Pea aphid)   1
Strigamia_maritima_22 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Proterospongia_sp._ATCC_50818_ 0
Monosiga_brevicollis_ 0
Naegleria_gruberi_ 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Mus_musculus_69_38   (House mouse)   2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Canis_familiaris_69_3.1   (Dog)   1
Loxodonta_africana_69_3   (African savanna elephant)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Danio_rerio_69_9   (Zebrafish)   1

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1
Homo_sapiens__(NCBI_version)   (Human)   1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1
STRING_v9.0.5_(STRING) 12
Uniprot_2018_03_genome 1932
NCBI_2017_08_genome 332

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.