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Domain combinations for SOCS box-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a SOCS box-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   79 79
Pan_troglodytes_76_2.1.4   (Chimpanzee)   36 36
Gorilla_gorilla_76_3.1   (Western gorilla)   39 39
Pongo_abelii_76_2   (Sumatran orangutan)   29 29
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   37 37
Papio_anubis_76   (Olive baboon)   33 33
Macaca_mulatta_76_1   (Rhesus monkey)   40 40
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   65 65
Otolemur_garnettii_76_3   (Small-eared galago)   32 32
Microcebus_murinus_76_1   (Gray mouse lemur)   21 21
Rattus_norvegicus_76_5.0   (Norway rat)   35 35
Mus_musculus_76_38   (House mouse)   56 56
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   22 22
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   32 32
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   31 31
Cavia_porcellus_76_3   (Domestic guinea pig)   30 30
Oryctolagus_cuniculus_76_2   (Rabbit)   31 31
Ochotona_princeps_76   (American pika)   23 23
Tupaia_belangeri_76   (Northern tree shrew)   20 20
Sus_scrofa_76_10.2   (Pig)   31 31
Bos_taurus_76_3.1   (Cattle)   33 33
Ovis_aries_76_3.1   (Sheep)   32 32
Vicugna_pacos_76_1   (Alpaca)   20 20
Tursiops_truncatus_76_1   (Bottlenose dolphin)   30 30
Mustela_putorius_furo_76_1.0   (Domestic ferret)   30 30
Ailuropoda_melanoleuca_76_1   (Giant panda)   32 32
Canis_familiaris_76_3.1   (Dog)   32 32
Felis_catus_76_6.2   (Domestic cat)   32 32
Equus_caballus_76_2   (Horse)   30 30
Myotis_lucifugus_76_2.0   (Little brown bat)   29 29
Pteropus_vampyrus_76_1   (Large flying fox)   27 27
Sorex_araneus_76_1   (European shrew)   11 11
Erinaceus_europaeus_76   (Western European hedgehog)   13 13
Procavia_capensis_76_1   (Cape rock hyrax)   23 23
Loxodonta_africana_76_3   (African savanna elephant)   34 34
Echinops_telfairi_76   (Small Madagascar hedgehog)   19 19
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   34 34
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   17 17
Macropus_eugenii_76_1.0   (Tammar wallaby)   22 22
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   37 37
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   27 27
Ornithorhynchus_anatinus_76_5   (Platypus)   16 16
Saccoglossus_kowalevskii_v3.0 45 45
Petromyzon_marinus_76_7.0   (Sea lamprey)   15 15
Meleagris_gallopavo_76_2   (Turkey)   29 29
Gallus_gallus_76_4   (Chicken)   30 30
Anas_platyrhynchos_76_1.0   (Mallard)   26 26
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   26 26
Ficedula_albicollis_76_1.0   (Collared flycatcher)   28 28
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   31 31
Anolis_carolinensis_76_2.0   (Green anole)   28 28
Xenopus_laevis_   (African clawed frog)   44 44
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   27 27
Latimeria_chalumnae_76_1   (Coelacanth)   38 38
Lepisosteus_oculatus_76   (Spotted gar)   37 37
Gadus_morhua_76_1   (Atlantic cod)   33 33
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   38 38
Takifugu_rubripes_76_4   (Torafugu)   59 59
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   38 38
Oryzias_latipes_76_1   (Japanese medaka)   35 35
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   40 40
Poecilia_formosa_76   (Amazon molly)   39 39
Oreochromis_niloticus_76_1.0   (Nile tilapia)   40 40
Astyanax_mexicanus_76   (Mexican tetra)   38 38
Danio_rerio_76_9   (Zebrafish)   63 63
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   9 9
Ciona_intestinalis_76   (Vase tunicate)   6 6
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   15 15
Adineta_vaga 11 11
Octopus_bimaculoides_280 36 36
Crassostrea_gigas_22   (Pacific oyster)   32 32
Lottia_gigantea_   (Owl limpet)   21 21
Helobdella_robusta_ 13 13
Capitella_sp._I_ 33 33
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8 8
Heliconius_melpomene_   (Postman butterfly)   6 6
Bombyx_mori_   (Domestic silkworm)   3 3
Nasonia_vitripennis_   (Jewel wasp)   4 4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   12 12
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   11 11
Linepithema_humile_v1.1   (Argentine ant)   7 7
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   8 8
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4 4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   8 8
Atta_cephalotes_v1.1 8 8
Camponotus_floridanus_v3.3   (Florida carpenter ant)   9 9
Lucilia_cuprina   (Australian sheep blowfly)   6 6
Drosophila_grimshawi_1.3 8 8
Drosophila_willistoni_1.3 8 8
Drosophila_pseudoobscura_2.13 8 8
Drosophila_persimilis_1.3 6 6
Drosophila_suzukii 7 6
Drosophila_yakuba_1.3 8 8
Drosophila_simulans_1.3 7 7
Drosophila_sechellia_1.3 8 8
Drosophila_melanogaster_76_5   (Fruit fly)   23 23
Drosophila_erecta_1.3 7 7
Drosophila_ananassae_1.3 8 8
Drosophila_virilis_1.2 8 8
Drosophila_mojavensis_1.3 9 9
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   13 13
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5 5
Anopheles_darlingi_22   (American malaria mosquito)   4 4
Anopheles_gambiae_49_3j   (African malaria mosquito)   8 8
Tribolium_castaneum_3.0   (Red flour beetle)   10 10
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5 5
Acyrthosiphon_pisum_   (Pea aphid)   8 8
Rhodnius_prolixus_22 9 9
Daphnia_pulex_   (Common water flea)   9 9
Strigamia_maritima_22 14 14
Sarcoptes_scabiei 3 3
Tetranychus_urticae_   (Two-spotted spider mite)   6 6
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   10 10
Meloidogyne_incognita_   (Southern root-knot nematode)   1 1
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 7 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   5 5
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 1 1
Caenorhabditis_remanei_ 2 2
Caenorhabditis_elegans_76_235   (Roundworm)   3 3
Caenorhabditis_briggsae_2 2 2
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 3 3
Echinococcus_multilocularis_ 4 4
Echinococcus_granulosus_ 4 4
Taenia_solium_   (Pork tapeworm)   4 4
Schistosoma_mansoni_ 5 5
Mnemiopsis_leidyi   (Sea walnut)   1 1
Acropora_digitifera_v1.0 16 16
Nematostella_vectensis_1.0   (Starlet sea anemone)   12 12
Hydra_vulgaris 1 1
Amphimedon_queenslandica 6 6
Trichoplax_adhaerens_ 2 2
Proterospongia_sp._ATCC_50818_ 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   51 51
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   14 14
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   10 10
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4 4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2 2

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   35 35
Pan_troglodytes_69_2.1.4   (Chimpanzee)   34 34
Gorilla_gorilla_69_3.1   (Western gorilla)   34 34
Pongo_abelii_69_2   (Sumatran orangutan)   28 28
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   33 33
Macaca_mulatta_69_1   (Rhesus monkey)   31 31
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   34 34
Otolemur_garnettii_69_3   (Small-eared galago)   32 32
Microcebus_murinus_69_1   (Gray mouse lemur)   21 21
Rattus_norvegicus_69_3.4   (Norway rat)   30 30
Mus_musculus_69_38   (House mouse)   33 33
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   22 22
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   30 30
Cavia_porcellus_69_3   (Domestic guinea pig)   30 30
Oryctolagus_cuniculus_69_2   (Rabbit)   30 30
Ochotona_princeps_69   (American pika)   23 23
Tupaia_belangeri_69   (Northern tree shrew)   20 20
Sus_scrofa_69_10.2   (Pig)   28 28
Bos_taurus_69_3.1   (Cattle)   31 31
Vicugna_pacos_69_1   (Alpaca)   20 20
Tursiops_truncatus_69_1   (Bottlenose dolphin)   30 30
Mustela_putorius_furo_69_1.0   (Domestic ferret)   30 30
Ailuropoda_melanoleuca_69_1   (Giant panda)   30 30
Canis_familiaris_69_3.1   (Dog)   29 29
Felis_catus_69   (Domestic cat)   19 19
Equus_caballus_69_2   (Horse)   29 29
Myotis_lucifugus_69_2.0   (Little brown bat)   28 28
Pteropus_vampyrus_69_1   (Large flying fox)   27 27
Sorex_araneus_69_1   (European shrew)   11 11
Erinaceus_europaeus_69   (Western European hedgehog)   13 13
Procavia_capensis_69_1   (Cape rock hyrax)   23 23
Loxodonta_africana_69_3   (African savanna elephant)   32 32
Echinops_telfairi_69   (Small Madagascar hedgehog)   19 19
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   14 14
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   17 17
Macropus_eugenii_69_1.0   (Tammar wallaby)   22 22
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   30 30
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   27 27
Ornithorhynchus_anatinus_69_5   (Platypus)   16 16
Petromyzon_marinus_69_7.0   (Sea lamprey)   14 14
Meleagris_gallopavo_69_2   (Turkey)   28 28
Gallus_gallus_69_2   (Chicken)   28 28
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   26 26
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   27 27
Anolis_carolinensis_69_2.0   (Green anole)   28 28
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   26 26
Latimeria_chalumnae_69_1   (Coelacanth)   32 32
Gadus_morhua_69_1   (Atlantic cod)   26 26
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   36 36
Takifugu_rubripes_69_4   (Torafugu)   30 30
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   32 32
Oryzias_latipes_69_1   (Japanese medaka)   30 30
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   40 40
Oreochromis_niloticus_69_1.0   (Nile tilapia)   37 37
Danio_rerio_69_9   (Zebrafish)   41 41
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   6 6
Ciona_intestinalis_69   (Vase tunicate)   6 6
Drosophila_melanogaster_69_5   (Fruit fly)   8 8
Caenorhabditis_elegans_69_215   (Roundworm)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   86 86
Homo_sapiens__(NCBI_version)   (Human)   53 53
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   33 33
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   4 4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3 3
PDB_chains_(SCOP_1.75)_(PDB) 2 2
Uniprot_2018_03_genome 7179 7177
NCBI_2017_08_genome 14758 14754
Protein_Data_Bank_(all_PDB_sequenc) 16 16
TargetDB__(Targets) 35 35
UniProt__viral_sequences_(Viral) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 23 23
NCBI_viral_sequences_(Viral) 1 1
STRING_v9.0.5_(STRING) 901 901

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