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Domain combinations for beta-Roll superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a beta-Roll domain in that genome.

Complete genomes
Genome Number Proteins

Canis_familiaris_76_3.1 (Dog) 1 1

Saccoglossus_kowalevskii_v3.0 27 21

Oryzias_latipes_76_1 (Japanese medaka) 1 1

Ciona_savignyi_76_2.0 (Pacific transparent sea squirt) 1 1

Octopus_bimaculoides_280 1 1

Crassostrea_gigas_22 (Pacific oyster) 5 2

Lottia_gigantea_ (Owl limpet) 1 1

Capitella_sp._I_ 35 14

Nasonia_vitripennis_ (Jewel wasp) 1 1

Apis_mellifera_38.2d_(Not_maintained) (Honey bee) 2 1

Daphnia_pulex_ (Common water flea) 1 1

Caenorhabditis_japonica_ 1 1

Mnemiopsis_leidyi (Sea walnut) 2 2

Acropora_digitifera_v1.0 9 3

Nematostella_vectensis_1.0 (Starlet sea anemone) 12 12

Hydra_vulgaris 2 1

Hebeloma_cylindrosporum_h7_v2.0 1 1

Botrytis_cinerea_B05.10_ 1 1

Dictyostelium_discoideum 1 1

Brassica_rapa_Chiifu-401_1.2 (Field mustard) 2 2

Fragaria_vesca_ (Wild strawberry) 1 1

Malus_domestica_v196 (Apple) 1 1

Triticum_urartu_22 1 1

Triticum_aestivum_22 (Bread wheat) 5 5

Aegilops_tauschii_22 1 1

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 1 1

Oryza_sativa_v193 (Rice) 1 1

Volvox_carteri_f._nagariensis_ 1 1

Aureococcus_anophagefferens_ 10 4

Phaeodactylum_tricornutumCCAP_1055/1 1 1

Thalassiosira_pseudonana_CCMP1335 5 3

Plasmodium_falciparum_3D7_ 2 2

Plasmodium_yoelii_ssp._yoelii_1_ 1 1

Symbiodinium_minutum_clade_B1_v1.2 1 1

Thermobaculum_terrenum_ATCC_BAA-798 3 3

Leptolyngbya_sp._PCC_7376 10 6

Pseudanabaena_sp._PCC_7367 46 29

Acaryochloris_marina_MBIC11017 103 31

Synechocystis_sp._PCC_6803 15 8

Synechococcus_sp._PCC_7502 14 6

Synechococcus_sp._PCC_6312 20 6

Synechococcus_sp._CC9311 4 4

Synechococcus_elongatus_PCC_7942 7 5

Microcoleus_sp._PCC_7113 18 6

Trichodesmium_erythraeum_IMS101 77 37

Geitlerinema_sp._PCC_7407 24 6

Cyanothece_sp._PCC_8802 9 6

Gloeocapsa_sp._PCC_7428 59 26

Halothece_sp._PCC_7418 21 14

Microcystis_aeruginosa_NIES-843 46 25

Gloeobacter_violaceus_PCC_7421 3 2

Rivularia_sp._PCC_7116 94 41

Calothrix_sp._PCC_7507 12 8

Anabaena_variabilis_ATCC_29413 64 14

'Nostoc_azollae'_0708 3 1

Nostoc_sp._PCC_7107 35 9

Nostoc_punctiforme_PCC_73102 86 25

Nostoc_sp._PCC_7120 53 18

Nostoc_sp._PCC_7524 60 27

Anabaena_sp._90 21 13

Conexibacter_woesei_DSM_14684 11 6

Rubrobacter_xylanophilus_DSM_9941 4 3

Modestobacter_marinus 1 1

Blastococcus_saxobsidens_DD2 2 1

Geodermatophilus_obscurus_DSM_43160 2 1

Kineococcus_radiotolerans_SRS30216 1 1

Stackebrandtia_nassauensis_DSM_44728 25 13

Streptosporangium_roseum_DSM_43021 2 2

Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1

Streptomyces_bingchenggensis_BCW-1 2 1

Streptomyces_violaceusniger_Tu_4113 2 2

Streptomyces_scabiei_87.22 4 3

Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1

Kribbella_flavida_DSM_17836 7 1

Microlunatus_phosphovorus_NM-1 6 4

Salinispora_arenicola_CNS-205 2 1

Micromonospora_sp._L5 1 1

Micromonospora_aurantiaca_ATCC_27029 1 1

Actinoplanes_sp._N902-109 2 1

Actinoplanes_sp._SE50/110 3 1

Actinoplanes_missouriensis_431 25 10

Segniliparus_rotundus_DSM_44985 1 1

Intrasporangium_calvum_DSM_43043 7 1

Isoptericola_variabilis_225 7 1

[Cellvibrio]_gilvus_ATCC_13127 5 3

Arthrobacter_chlorophenolicus_A6 1 1

Arthrobacter_sp._FB24 2 1

Anaerolinea_thermophila_UNI-1 2 2

Ruminococcus_albus_7 3 1

Filifactor_alocis_ATCC_35896 8 1

Clostridium_cellulovorans_743B 76 12

Thermodesulfobium_narugense_DSM_14796 4 2

Streptococcus_sanguinis_SK36 4 1

Paenibacillus_mucilaginosus_3016 22 10

Pelodictyon_phaeoclathratiforme_BU-1 5 3

Chlorobium_luteolum_DSM_273 8 2

Chlorobium_chlorochromatii_CaD3 11 10

Chlorobium_phaeobacteroides_DSM_266 40 5

Chlorobium_phaeovibrioides_DSM_265 12 2

Chlorobium_limicola_DSM_245 70 9

Prosthecochloris_aestuarii_DSM_271 1 1

Isosphaera_pallida_ATCC_43644 35 6

Planctomyces_brasiliensis_DSM_5305 1 1

Rhodopirellula_baltica_SH_1 5 1

Pirellula_staleyi_DSM_6068 16 9

Coraliomargarita_akajimensis_DSM_45221 5 1

Opitutus_terrae_PB90-1 1 1

Desulfurispirillum_indicum_S5 1 1

Denitrovibrio_acetiphilus_DSM_12809 1 1

Aquifex_aeolicus_VF5 1 1

Candidatus_Chloracidobacterium_thermophilum_B 1 1

Candidatus_Nitrospira_defluvii 12 1

Sulfurospirillum_deleyianum_DSM_6946 24 8

Arcobacter_nitrofigilis_DSM_7299 15 4

Arcobacter_butzleri_RM4018 1 1

Campylobacter_hominis_ATCC_BAA-381 21 12

Campylobacter_curvus_525.92 1 1

Campylobacter_concisus_13826 1 1

Campylobacter_sp._03-427 1 1

Campylobacter_fetus_subsp._fetus_82-40 2 1

uncultured_Sulfuricurvum_sp._RIFRC-1 16 6

Sulfuricurvum_kujiense_DSM_16994 14 4

Sulfurimonas_denitrificans_DSM_1251 9 4

Nitratiruptor_sp._SB155-2 3 2

Sulfurovum_sp._NBC37-1 1 1

Desulfomonile_tiedjei_DSM_6799 41 3

Desulfotalea_psychrophila_LSv54 1 1

Desulfococcus_oleovorans_Hxd3 10 1

Desulfomicrobium_baculatum_DSM_4028 63 6

Desulfovibrio_piezophilus 2 2

Desulfovibrio_aespoeensis_Aspo-2 15 4

Desulfovibrio_alaskensis_G20 7 2

Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1 1

Desulfovibrio_salexigens_DSM_2638 16 5

Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1 1

Desulfovibrio_africanus_str._Walvis_Bay 3 1

Geobacter_daltonii_FRC-32 12 1

Geobacter_uraniireducens_Rf4 12 1

Pelobacter_propionicus_DSM_2379 18 2

Haliangium_ochraceum_DSM_14365 1 1

Corallococcus_coralloides_DSM_2259 2 2

Dechloromonas_aromatica_RCB 2 1

Azoarcus_sp._KH32C 51 10

Aromatoleum_aromaticum_EbN1 1 1

Dechlorosoma_suillum_PS 15 1

Pseudogulbenkiania_sp._NH8B 1 1

Laribacter_hongkongensis_HLHK9 2 2

Chromobacterium_violaceum_ATCC_12472 14 2

Neisseria_meningitidis_alpha14 12 2

Neisseria_meningitidis_FAM18 7 1

Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 101 9

beta_proteobacterium_CB 3 3

Methylibium_petroleiphilum_PM1 1 1

Rubrivivax_gelatinosus_IL144 1 1

Leptothrix_cholodnii_SP-6 14 3

Ralstonia_eutropha_JMP134 4 1

Cupriavidus_taiwanensis_LMG_19424 5 2

Cupriavidus_necator_N-1 4 1

Ralstonia_eutropha_H16 3 1

Ralstonia_solanacearum_CFBP2957 13 4

Burkholderia_sp._CCGE1002 1 1

Burkholderia_ambifaria_AMMD 1 1

Burkholderia_multivorans_ATCC_17616 1 1

Verminephrobacter_eiseniae_EF01-2 5 2

Ramlibacter_tataouinensis_TTB310 22 1

Delftia_sp._Cs1-4 1 1

Polaromonas_sp._JS666 16 3

Variovorax_paradoxus_S110 3 1

Rhodoferax_ferrireducens_T118 20 4

Acidovorax_sp._KKS102 3 3

Acidovorax_sp._JS42 2 1

Acidovorax_avenae_subsp._avenae_ATCC_19860 18 3

Comamonas_testosteroni_CNB-2 1 1

Herminiimonas_arsenicoxydans 9 1

Collimonas_fungivorans_Ter331 10 1

Janthinobacterium_sp._Marseille 6 1

Herbaspirillum_seropedicae_SmR1 16 5

Taylorella_equigenitalis_MCE9 1 1

Bordetella_avium_197N 2 1

Bordetella_pertussis_Tohama_I 5 1

Bordetella_parapertussis_12822 6 2

Bordetella_bronchiseptica_RB50 6 2

Achromobacter_xylosoxidans_A8 5 4

Achromobacter_xylosoxidans 19 3

Nitrosomonas_sp._Is79A3 24 11

Nitrosomonas_europaea_ATCC_19718 1 1

Sideroxydans_lithotrophicus_ES-1 15 2

Gallionella_capsiferriformans_ES-2 10 2

Methylotenera_versatilis_301 27 4

Methylotenera_mobilis_JLW8 13 2

Methylovorus_sp._MP688 1 1

Methylovorus_glucosetrophus_SIP3-4 44 7

Methylobacillus_flagellatus_KT 9 2

Magnetococcus_marinus_MC-1 13 8

Parvularcula_bermudensis_HTCC2503 13 8

Brevundimonas_subvibrioides_ATCC_15264 18 3

Caulobacter_sp._K31 27 13

Caulobacter_crescentus_NA1000 8 4

Caulobacter_segnis_ATCC_21756 13 7

Phenylobacterium_zucineum_HLK1 58 24

Novosphingobium_sp._PP1Y 4 2

Novosphingobium_aromaticivorans_DSM_12444 3 3

Sphingobium_japonicum_UT26S 36 5

Sphingobium_chlorophenolicum_L-1 6 2

Sphingomonas_wittichii_RW1 11 5

Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 1 1

Maricaulis_maris_MCS10 8 3

Dinoroseobacter_shibae_DFL_12 26 11

Phaeobacter_gallaeciensis_2.10 52 20

Pseudovibrio_sp._FO-BEG1 52 17

Jannaschia_sp._CCS1 17 10

Ruegeria_sp._TM1040 26 14

Ruegeria_pomeroyi_DSS-3 52 15

Ketogulonicigenium_vulgare_Y25 7 2

Ketogulonigenium_vulgarum_WSH-001 7 2

Roseobacter_litoralis_Och_149 41 13

Roseobacter_denitrificans_OCh_114 50 15

Rhodobacter_sphaeroides_ATCC_17029 19 8

Rhodobacter_capsulatus_SB_1003 58 16

Paracoccus_denitrificans_PD1222 33 11

Rhodospirillum_photometricum_DSM_122 12 2

Tistrella_mobilis_KA081020-065 57 12

Magnetospirillum_magneticum_AMB-1 22 7

Rhodospirillum_centenum_SW 14 9

Azospirillum_lipoferum_4B 59 11

Azospirillum_sp._B510 62 10

Azospirillum_brasilense_Sp245 95 39

Gluconacetobacter_xylinus_NBRC_3288 1 1

Granulibacter_bethesdensis_CGDNIH1 24 14

Gluconacetobacter_diazotrophicus_PAl_5 2 1

Acidiphilium_multivorum_AIU301 6 3

Acidiphilium_cryptum_JF-5 2 1

Gluconobacter_oxydans_621H 2 1

Acetobacter_pasteurianus_IFO_3283-01 2 1

Polymorphum_gilvum_SL003B-26A1 1 1

Micavibrio_aeruginosavorus_ARL-13 24 6

Candidatus_Puniceispirillum_marinum_IMCC1322 4 3

Starkeya_novella_DSM_506 7 1

Xanthobacter_autotrophicus_Py2 1 1

Azorhizobium_caulinodans_ORS_571 6 3

Methylobacterium_chloromethanicum_CM4 30 12

Methylobacterium_extorquens_AM1 43 11

Methylobacterium_sp._4-46 23 11

Methylobacterium_populi_BJ001 34 9

Methylobacterium_nodulans_ORS_2060 35 17

Methylobacterium_radiotolerans_JCM_2831 7 1

Ochrobactrum_anthropi_ATCC_49188 5 2

Sinorhizobium_fredii_NGR234 43 14

Sinorhizobium_medicae_WSM419 43 14

Sinorhizobium_meliloti_AK83 39 15

Genome_sequence_of_Rhizobium_sp._strain_IRBG74 2 2

Rhizobium_etli_CIAT_652 33 6

Rhizobium_leguminosarum_bv._viciae_3841 20 6

Agrobacterium_tumefaciens_str._C58 6 4

Agrobacterium_radiobacter_K84 2 2

Agrobacterium_sp._H13-3 3 3

Agrobacterium_vitis_S4 27 6

Candidatus_Liberibacter_asiaticus_str._psy62 1 1

Mesorhizobium_sp._BNC1 16 3

Mesorhizobium_opportunistum_WSM2075 6 2

Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 5 4

Mesorhizobium_loti_MAFF303099 10 3

Methylocella_silvestris_BL2 5 1

Beijerinckia_indica_subsp._indica_ATCC_9039 10 1

Pelagibacterium_halotolerans_B2 15 3

Oligotropha_carboxidovorans_OM4 5 2

Rhodopseudomonas_palustris_BisA53 7 3

Nitrobacter_winogradskyi_Nb-255 2 1

Nitrobacter_hamburgensis_X14 3 2

Bradyrhizobium_japonicum_USDA_110 24 9

Bradyrhizobium_sp._ORS_278 7 4

Saccharophagus_degradans_2-40 1 1

Cellvibrio_japonicus_Ueda107 1 1

Aggregatibacter_actinomycetemcomitans_D7S-1 2 1

Gallibacterium_anatis_UMN179 9 4

Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 10 3

Oceanimonas_sp._GK1 1 1

Tolumonas_auensis_DSM_9187 3 2

Aeromonas_veronii_B565 4 3

Aeromonas_salmonicida_subsp._salmonicida_A449 4 2

Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 7 4

Aliivibrio_salmonicida_LFI1238 1 1

Vibrio_fischeri_MJ11 2 2

Vibrio_sp._Ex25 7 6

Vibrio_harveyi_ATCC_BAA-1116 15 6

Vibrio_parahaemolyticus_RIMD_2210633 6 6

Vibrio_splendidus_LGP32 2 2

Vibrio_anguillarum_775 3 3

Vibrio_furnissii_NCTC_11218 1 1

Vibrio_vulnificus_MO6-24/O 5 4

Vibrio_cholerae_O395 4 3

Photobacterium_profundum_SS9 3 2

Psychromonas_ingrahamii_37 2 1

Psychromonas_sp._CNPT3 2 1

Shewanella_piezotolerans_WP3 16 4

Shewanella_loihica_PV-4 2 2

Shewanella_halifaxensis_HAW-EB4 3 2

Shewanella_sediminis_HAW-EB3 4 4

Shewanella_denitrificans_OS217 1 1

Shewanella_pealeana_ATCC_700345 3 2

Shewanella_oneidensis_MR-1 1 1

Shewanella_baltica_OS185 2 1

Shewanella_woodyi_ATCC_51908 5 4

Shewanella_sp._MR-4 1 1

Shewanella_amazonensis_SB2B 1 1

Shewanella_violacea_DSS12 10 3

Shewanella_frigidimarina_NCIMB_400 1 1

Shewanella_putrefaciens_CN-32 1 1

Colwellia_psychrerythraea_34H 1 1

Marinobacter_sp._BSs20148 2 1

Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1

Hahella_chejuensis_KCTC_2396 41 6

Marinomonas_posidonica_IVIA-Po-181 1 1

Marinomonas_sp._MWYL1 3 1

Marinomonas_mediterranea_MMB-1 1 1

Chromohalobacter_salexigens_DSM_3043 2 1

Methylomicrobium_alcaliphilum 2 1

Dichelobacter_nodosus_VCS1703A 3 2

Xylella_fastidiosa_M23 24 4

Xanthomonas_axonopodis_pv._citri_str._306 14 3

Spiribacter_sp._UAH-SP71 1 1

Thioalkalivibrio_sp._K90mix 2 2

Allochromatium_vinosum_DSM_180 12 4

Thiocystis_violascens_DSM_198 1 1

Nitrosococcus_watsonii_C-113 1 1

Nitrosococcus_oceani_ATCC_19707 1 1

Legionella_pneumophila_str._Corby 3 1

gamma_proteobacterium_HdN1 13 1

Candidatus_Ruthia_magnifica_str._Cm_(Calyptogena_magnifica) 1 1

Photorhabdus_asymbiotica 8 5

Photorhabdus_luminescens_subsp._laumondii_TTO1 14 7

Xenorhabdus_bovienii_SS-2004 2 2

Xenorhabdus_nematophila_ATCC_19061 6 3

Proteus_mirabilis_HI4320 12 7

Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1

Yersinia_pseudotuberculosis_IP_31758 3 2

Yersinia_pestis_Pestoides_F 3 2

Yersinia_enterocolitica_subsp._enterocolitica_8081 7 4

Serratia_sp._AS12 4 3

Serratia_sp._ATCC_39006 1 1

Serratia_plymuthica_AS9 4 3

Serratia_proteamaculans_568 4 3

Dickeya_zeae_Ech1591 4 4

Pectobacterium_wasabiae_WPP163 2 2

Pectobacterium_sp._SCC3193 2 2

Pectobacterium_atrosepticum_SCRI1043 2 2

Pectobacterium_carotovorum_subsp._carotovorum_PC1 3 3

Pantoea_sp._At-9b 1 1

Pantoea_vagans_C9-1 1 1

Erwinia_sp._Ejp617 1 1

Erwinia_pyrifoliae_Ep1/96 1 1

Erwinia_amylovora_ATCC_49946 1 1

Escherichia_blattae_DSM_4481 7 2

Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 27 17

Enterobacteriaceae_bacterium_strain_FGI_57 3 2

Shigella_dysenteriae_Sd197 1 1

Escherichia_fergusonii_ATCC_35469 1 1

Enterobacter_asburiae_LF7a 1 1

Enterobacter_cloacae_subsp._dissolvens_SDM 3 3

Azotobacter_vinelandii_DJ 47 16

Pseudomonas_sp._TKP 4 4

Pseudomonas_sp._UW4 28 6

Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 16 7

Pseudomonas_entomophila_L48 6 4

Pseudomonas_syringae_pv._tomato_str._DC3000 9 3

Pseudomonas_fulva_12-X 9 3

Pseudomonas_putida_F1 10 3

Pseudomonas_protegens_Pf-5 8 5

Pseudomonas_fluorescens_SBW25 6 6

Pseudomonas_mendocina_ymp 19 5

Pseudomonas_aeruginosa_UCBPP-PA14 2 2

Pseudomonas_sp._VLB120 4 3

Psychrobacter_sp._PRwf-1 7 5

Acinetobacter_oleivorans_DR1 4 2

Acinetobacter_calcoaceticus_PHEA-2 2 1

Acinetobacter_baumannii_ATCC_17978 24 4

Methylophaga_sp._JAM1 23 3

Cycloclasticus_sp._P1 1 1

Thiomicrospira_crunogena_XCL-2 1 1

Francisella_cf._novicida_3523 4 1

Cenarchaeum_symbiosum_A 1 1

Candidatus_Nitrosopumilus_sp._AR2 1 1

Nitrosopumilus_maritimus_SCM1 1 1

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Longest transcript per gene
Genome Number Proteins

Canis_familiaris_69_3.1 (Dog) 1 1

Oryzias_latipes_69_1 (Japanese medaka) 1 1

Ciona_savignyi_69_2.0 (Pacific transparent sea squirt) 1 1

Others
Genome Number Proteins

Loa_loa_v3.3_(Request) (Eye worm) 1 1

Brugia_malayi_v1.0_(Duplicate) (Agent of lymphatic filariasis) 2 2

Lotus_japonicus__(Early_assembly) 2 2

Malus_x_domestica_(Duplicate) (Apple) 1 1

Ricinus_communis__(Early_assembly) (Castor bean) 4 4

Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 7 5

NCBI_plasmid_sequences_(Plasmids) 998 320

Protozoadb_2010_08_(Protozoadb) 5 5

TargetDB__(Targets) 86 28

Protein_Data_Bank_(all_PDB_sequenc) 87 70

STRING_v9.0.5_(STRING) 3338 1265

PDB_chains_(SCOP_1.75)_(PDB) 13 13

SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 141 141

Uniprot_2018_03_genome 84294 32866

NCBI_2017_08_genome 134176 62743

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Domain combinations for beta-Roll superfamily in groups of genomes