SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for SNARE fusion complex superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a SNARE fusion complex domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   115 105
Pan_troglodytes_76_2.1.4   (Chimpanzee)   31 26
Gorilla_gorilla_76_3.1   (Western gorilla)   37 33
Pongo_abelii_76_2   (Sumatran orangutan)   28 23
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   31 27
Papio_anubis_76   (Olive baboon)   37 32
Macaca_mulatta_76_1   (Rhesus monkey)   54 48
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   55 51
Otolemur_garnettii_76_3   (Small-eared galago)   29 26
Microcebus_murinus_76_1   (Gray mouse lemur)   22 20
Rattus_norvegicus_76_5.0   (Norway rat)   34 30
Mus_musculus_76_38   (House mouse)   64 57
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   25 22
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   28 24
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   41 35
Cavia_porcellus_76_3   (Domestic guinea pig)   31 27
Oryctolagus_cuniculus_76_2   (Rabbit)   35 30
Ochotona_princeps_76   (American pika)   21 19
Tupaia_belangeri_76   (Northern tree shrew)   19 18
Sus_scrofa_76_10.2   (Pig)   31 27
Bos_taurus_76_3.1   (Cattle)   28 24
Ovis_aries_76_3.1   (Sheep)   38 34
Vicugna_pacos_76_1   (Alpaca)   19 16
Tursiops_truncatus_76_1   (Bottlenose dolphin)   25 23
Mustela_putorius_furo_76_1.0   (Domestic ferret)   33 29
Ailuropoda_melanoleuca_76_1   (Giant panda)   32 29
Canis_familiaris_76_3.1   (Dog)   43 37
Felis_catus_76_6.2   (Domestic cat)   31 27
Equus_caballus_76_2   (Horse)   30 26
Myotis_lucifugus_76_2.0   (Little brown bat)   30 25
Pteropus_vampyrus_76_1   (Large flying fox)   28 25
Sorex_araneus_76_1   (European shrew)   15 13
Erinaceus_europaeus_76   (Western European hedgehog)   18 15
Procavia_capensis_76_1   (Cape rock hyrax)   26 23
Loxodonta_africana_76_3   (African savanna elephant)   37 33
Echinops_telfairi_76   (Small Madagascar hedgehog)   21 18
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   39 34
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   23 19
Macropus_eugenii_76_1.0   (Tammar wallaby)   20 18
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   29 25
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   33 29
Ornithorhynchus_anatinus_76_5   (Platypus)   26 22
Saccoglossus_kowalevskii_v3.0 27 24
Petromyzon_marinus_76_7.0   (Sea lamprey)   26 20
Meleagris_gallopavo_76_2   (Turkey)   30 25
Gallus_gallus_76_4   (Chicken)   27 23
Anas_platyrhynchos_76_1.0   (Mallard)   29 25
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   31 26
Ficedula_albicollis_76_1.0   (Collared flycatcher)   30 26
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   36 31
Anolis_carolinensis_76_2.0   (Green anole)   39 33
Xenopus_laevis_   (African clawed frog)   91 77
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   36 31
Latimeria_chalumnae_76_1   (Coelacanth)   40 35
Lepisosteus_oculatus_76   (Spotted gar)   42 36
Gadus_morhua_76_1   (Atlantic cod)   34 29
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   38 32
Takifugu_rubripes_76_4   (Torafugu)   69 55
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   52 42
Oryzias_latipes_76_1   (Japanese medaka)   43 34
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   35 31
Poecilia_formosa_76   (Amazon molly)   43 36
Oreochromis_niloticus_76_1.0   (Nile tilapia)   48 39
Astyanax_mexicanus_76   (Mexican tetra)   38 32
Danio_rerio_76_9   (Zebrafish)   77 65
Oikopleura_dioica 21 17
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   22 21
Ciona_intestinalis_76   (Vase tunicate)   21 19
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   26 23
Adineta_vaga 68 61
Octopus_bimaculoides_280 25 22
Crassostrea_gigas_22   (Pacific oyster)   30 25
Lottia_gigantea_   (Owl limpet)   22 19
Helobdella_robusta_ 26 23
Capitella_sp._I_ 21 19
Danaus_plexippus_OGS1.0   (Monarch butterfly)   20 17
Heliconius_melpomene_   (Postman butterfly)   12 10
Bombyx_mori_   (Domestic silkworm)   13 12
Nasonia_vitripennis_   (Jewel wasp)   13 11
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   35 32
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   20 18
Linepithema_humile_v1.1   (Argentine ant)   20 18
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   20 19
Solenopsis_invicta_v.2.2.3   (Red fire ant)   17 14
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   18 17
Atta_cephalotes_v1.1 18 17
Camponotus_floridanus_v3.3   (Florida carpenter ant)   26 21
Lucilia_cuprina   (Australian sheep blowfly)   22 16
Drosophila_grimshawi_1.3 21 18
Drosophila_willistoni_1.3 20 17
Drosophila_pseudoobscura_2.13 20 18
Drosophila_persimilis_1.3 20 17
Drosophila_suzukii 18 15
Drosophila_yakuba_1.3 21 18
Drosophila_simulans_1.3 15 14
Drosophila_sechellia_1.3 18 17
Drosophila_melanogaster_76_5   (Fruit fly)   64 60
Drosophila_erecta_1.3 19 16
Drosophila_ananassae_1.3 18 16
Drosophila_virilis_1.2 20 17
Drosophila_mojavensis_1.3 20 17
Megaselia_scalaris_22 7 7
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   16 14
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   19 17
Anopheles_darlingi_22   (American malaria mosquito)   15 14
Anopheles_gambiae_49_3j   (African malaria mosquito)   22 20
Tribolium_castaneum_3.0   (Red flour beetle)   18 16
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   15 13
Acyrthosiphon_pisum_   (Pea aphid)   20 17
Rhodnius_prolixus_22 19 16
Daphnia_pulex_   (Common water flea)   24 22
Strigamia_maritima_22 24 20
Sarcoptes_scabiei 15 13
Tetranychus_urticae_   (Two-spotted spider mite)   18 15
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   18 17
Pristionchus_pacificus_ 19 13
Meloidogyne_incognita_   (Southern root-knot nematode)   24 21
Meloidogyne_hapla_ 12 10
Onchocerca_volvulus_22 16 14
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   18 16
Caenorhabditis_japonica_ 17 15
Caenorhabditis_brenneri_ 19 16
Caenorhabditis_remanei_ 18 15
Caenorhabditis_elegans_76_235   (Roundworm)   26 22
Caenorhabditis_briggsae_2 19 17
Trichinella_spiralis_22 12 10
Hymenolepis_microstoma_ 17 14
Echinococcus_multilocularis_ 16 13
Echinococcus_granulosus_ 16 13
Taenia_solium_   (Pork tapeworm)   16 14
Schistosoma_mansoni_ 26 22
Mnemiopsis_leidyi   (Sea walnut)   18 16
Thelohanellus_kitauei 7 5
Acropora_digitifera_v1.0 17 16
Nematostella_vectensis_1.0   (Starlet sea anemone)   24 21
Hydra_vulgaris 17 14
Amphimedon_queenslandica 24 22
Trichoplax_adhaerens_ 23 21
Proterospongia_sp._ATCC_50818_ 15 15
Monosiga_brevicollis_ 11 11
Sphaeroforma_arctica_JP610_ 19 18
Capsaspora_owczarzaki_ATCC_30864_ 17 15
Conidiobolus_coronatus_NRRL28638_v1.0 13 11
Mortierella_verticillata_NRRL_6337_ 17 16
Phycomyces_blakesleeanus_ 11 11
Rhizopus_oryzae_RA_99-880_ 13 12
Mucor_circinelloides_ 13 12
Rhizomucor_miehei_CAU432_ 13 12
Malassezia_globosa_CBS_7966_ 18 16
Sporisorium_reilianum_22 12 11
Ustilago_maydis_ 12 11
Mixia_osmundae_IAM_14324_v1.0 13 12
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 14 13
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 18 16
Melampsora_laricis-populina_ 13 12
Rhodotorula_graminis_WP1_v1.0 13 12
Sporobolomyces_roseus_IAM_13481_ 9 8
Microbotryum_violaceum_22 14 13
Wallemia_sebi_v1.0 9 8
Sphaerobolus_stellatus_v1.0 16 16
Piloderma_croceum_F_1598_v1.0 14 13
Serpula_lacrymans_var._lacrymans_S7.9_ 12 11
Coniophora_puteana 12 11
Hydnomerulius_pinastri_v2.0 15 13
Paxillus_rubicundulus_Ve08.2h10_v1.0 13 12
Pisolithus_microcarpus_441_v1.0 13 12
Pisolithus_tinctorius_Marx_270_v1.0 11 10
Scleroderma_citrinum_Foug_A_v1.0 13 12
Coprinopsis_cinerea_okayama7_130_v3 14 13
Pleurotus_ostreatus_   (Oyster mushroom)   13 12
Amanita_thiersii_Skay4041_v1.0 14 13
Amanita_muscaria_Koide_v1.0   (Fly agaric)   14 13
Galerina_marginata_v1.0 14 13
Hebeloma_cylindrosporum_h7_v2.0 13 12
Laccaria_bicolor_S238N-H82_ 14 13
Agaricus_bisporus_var._bisporus_ 13 12
Schizophyllum_commune_ 17 15
Stereum_hirsutum_FP-91666_SS1__v1.0 13 12
Heterobasidion_annosum_ 12 11
Gloeophyllum_trabeumv1.0 13 12
Punctularia_strigosozonata_v1.0 12 11
Sebacina_vermifera_MAFF_305830_v1.0 16 15
Fomitiporia_mediterranea_v1.0 13 12
Tulasnella_calospora_AL13/4D_v1.0 13 13
Postia_placenta_ 20 19
Wolfiporia_cocos_MD-104_SS10__v1.0 14 13
Fomitopsis_pinicolav1.0 12 11
Fomitopsis_pinicola_FP-58527_SS1_v3.0 12 11
Phanerochaete_chrysosporium_RP-78_2.1 11 10
Dichomitus_squalens 14 13
Trametes_versicolor_v1.0 13 12
Tremella_mesenterica_   (Witches' butter)   12 11
Daldinia_eschscholzii_EC12_v1.0 13 12
Apiospora_montagnei_NRRL_25634_v1.0 13 12
Magnaporthe_poae_ATCC_64411_22 8 8
Magnaporthe_grisea_70-15_ 11 11
Podospora_anserina_ 10 10
Sporotrichum_thermophile_ATCC_42464_ 11 11
Thielavia_terrestris_NRRL_8126_ 12 11
Chaetomium_globosum_CBS_148.51_ 10 10
Neurospora_tetrasperma_ 11 11
Neurospora_discreta_FGSC_8579_ 11 11
Neurospora_crassa_OR74A_ 11 11
Cryphonectria_parasitica_   (Chestnut blight fungus)   10 10
Verticillium_albo-atrum_VaMs.102_ 9 9
Verticillium_dahliae_VdLs.17_ 11 10
Acremonium_alcalophilumv_1.0 11 11
Glomerella_graminicola_22 13 12
Fusarium_graminearum_ 13 12
Nectria_haematococca_mpVI_ 14 13
Fusarium_oxysporum_f._sp._lycopersici_4286_ 13 12
Fusarium_verticillioides_7600_ 13 12
Trichoderma_asperellum_CBS_433.97_v1.0 13 12
Trichoderma_atroviride_ 13 12
Trichoderma_citrinoviride_v1.0 14 13
Trichoderma_reesei_1.2 13 12
Trichoderma_virens_Gv29-8_ 13 12
Trichoderma_longibrachiatum_ATCC_18648_v1.0 12 11
Trichoderma_harzianum_CBS_226.95_v1.0 13 12
Amorphotheca_resinae_v1.0   (Creosote fungus)   14 13
Botrytis_cinerea_B05.10_ 13 12
Sclerotinia_sclerotiorum_ 14 13
Blumeria_graminis_22 12 11
Didymella_exigua_CBS_183.55_v1.0 14 13
Leptosphaeria_maculans_22 14 13
Setosphaeria_turcica_v1.0 14 13
Cochliobolus_miyabeanus_ATCC_44560_v1.0 13 12
Cochliobolus_victoriae_FI3_v1.0 13 12
Cochliobolus_carbonum_26-R-13_v1.0 13 12
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   13 12
Alternaria_brassicicola_ 9 9
Cochliobolus_lunatus_m118_v2.0 13 12
Pyrenophora_teres_f._teres_22 12 11
Pyrenophora_tritici-repentis_ 13 12
Stagonospora_nodorum_ 14 13
Mycosphaerella_graminicola_IPO323_ 13 12
Zasmidium_cellare_ATCC_36951_v1.0 13 12
Dothistroma_septosporum 13 12
Septoria_musiva_v1.0 14 13
Mycosphaerella_fijiensis_CIRAD86_ 14 13
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 13 12
Paracoccidioides_brasiliensis_Pb18_ 11 11
Coccidioides_posadasii_RMSCC_3488_ 13 12
Coccidioides_immitis_RS_ 14 13
Ajellomyces_dermatitidis_SLH14081_ 12 11
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 11 10
Microsporum_canis_CBS_113480_ 13 12
Trichophyton_equinum_CBS_127.97_ 13 12
Trichophyton_verrucosum_HKI_0517_ 11 10
Arthroderma_benhamiae_CBS_112371_ 11 10
Trichophyton_tonsurans_CBS_112818_ 14 13
Trichophyton_rubrum_CBS_118892_ 14 13
Uncinocarpus_reesii_1704_ 9 8
Aspergillus_zonatus_v1.0 12 11
Penicillium_chrysogenum_Wisconsin_54-1255_ 12 11
Penicillium_chrysogenum_v1.0 13 12
Aspergillus_acidus_v1.0 14 13
Aspergillus_fumigatus_Af293 11 10
Aspergillus_brasiliensis_v1.0 14 13
Aspergillus_nidulans_FGSC_A4_ 13 12
Aspergillus_sydowii_v1.0 13 12
Aspergillus_versicolor_v1.0 14 13
Aspergillus_glaucus 14 13
Aspergillus_carbonarius_ITEM_5010_ 13 12
Neosartorya_fischeri_NRRL_181_ 14 13
Aspergillus_terreus_NIH2624_ 11 10
Aspergillus_tubingensis_v1.0 13 12
Aspergillus_wentii_v1.0 14 13
Aspergillus_oryzae_RIB40_ 11 11
Aspergillus_niger_22 13 12
Aspergillus_niger_ATCC_1015_ 4 4
Aspergillus_flavus_NRRL3357_ 12 11
Aspergillus_clavatus_NRRL_1_ 14 13
Penicillium_marneffei_ATCC_18224_ 17 16
Tuber_melanosporum_Mel28_22 12 11
Tuber_melanosporum_Vittad_   (Perigord truffle)   13 12
Hansenula_polymorpha_v2.0 12 11
Dekkera_bruxellensis_CBS_2499_v2.0 13 12
Pichia_membranifaciensv1.0 13 12
Candida_tanzawaensis_NRRL_Y-17324__v1.0 11 10
Candida_dubliniensis_CD36_ 11 10
Candida_tropicalis_MYA-3404_ 11 10
Candida_parapsilosis_ 11 10
Candida_albicans_SC5314 11 10
Lodderomyces_elongisporus_NRRL_YB-4239_ 12 11
Babjeviella_inositovora_NRRL_Y-12698_v1.0 14 12
Pichia_stipitis_CBS_6054_ 14 12
Candida_guilliermondii_ATCC_6260_ 11 10
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 11 10
Debaromyces_hansenii 12 11
Wickerhamomyces_anomalus 10 9
Pichia_pastoris_GS115_ 11 10
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 8 8
Yarrowia_lipolytica_CLIB122 13 12
Candida_lusitaniae_ATCC_42720_ 10 9
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 11 10
Vanderwaltozyma_polyspora_DSM_70294_ 15 13
Candida_glabrata_CBS138 14 13
Kluyveromyces_thermotolerans_CBS_6340 12 11
Lachancea_kluyveri_ 13 12
Kluyveromyces_waltii 11 10
Ashbya_gossypii_ATCC_10895_ 13 12
Zygosaccharomyces_rouxii_ 12 11
Saccharomyces_mikatae_MIT 16 14
Saccharomyces_paradoxus_MIT 15 13
Saccharomyces_cerevisiae_76   (Baker's yeast)   17 15
Saccharomyces_bayanus_MIT 14 13
Kluyveromyces_lactis 13 12
Schizosaccharomyces_cryophilus_OY26_22 10 9
Schizosaccharomyces_octosporus_yFS286_ 10 9
Schizosaccharomyces_japonicus_yFS275_ 10 9
Schizosaccharomyces_pombe   (Fission yeast)   10 9
Catenaria_anguillulae_PL171_v1.0 29 27
Allomyces_macrogynus_ATCC_38327_ 35 32
Spizellomyces_punctatus_DAOM_BR117_ 21 18
Dictyostelium_discoideum 25 23
Dictyostelium_purpureum_ 27 24
Entamoeba_dispar_1.2 27 27
Entamoeba_invadens_1.2 20 20
Entamoeba_histolytica_1 26 26
Selaginella_moellendorffii_ 48 44
Pinus_taeda   (Loblolly pine)   22 20
Picea_abies   (Norway spruce)   14 12
Eucalyptus_grandis_v201   (Rose gum)   68 61
Theobroma_cacao_B97-61/B2_v1   (Cacao)   33 31
Gossypium_raimondii_v221 158 149
Citrus_clementina_v165 43 41
Citrus_sinensis_v154   (Sweet orange)   55 53
Thellungiella_halophila_v173 48 44
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   70 63
Capsella_rubella_v183 39 36
Arabidopsis_lyrata_   (Lyrate rockcress)   42 39
Arabidopsis_thaliana_10   (Thale cress)   59 56
Carica_papaya_   (Papaya)   29 27
Medicago_truncatula_   (Barrel medic)   60 56
Phaseolus_vulgaris_v186   (French bean)   52 46
Glycine_max_v109   (Soybean)   105 97
Cucumis_sativus_v122   (Cucumber)   53 50
Fragaria_vesca_   (Wild strawberry)   29 27
Malus_domestica_v196   (Apple)   65 61
Prunus_persica_v139   (Peach)   34 33
Linum_usitatissimum_v200   (Flax)   80 73
Manihot_esculenta_v147   (Cassava)   59 55
Populus_trichocarpa_v156   (Black cottonwood)   60 56
Vitis_vinifera_   (Wine grape)   31 30
Mimulus_guttatus_v140   (Spotted monkey flower)   42 39
Solanum_lycopersicum_v.2.3   (Tomato)   34 31
Solanum_tuberosum_   (Potato)   60 56
Actinidia_chinensis_Hongyang_ 45 39
Aquilegia_coerulea_v195 57 55
Triticum_urartu_22 32 29
Triticum_aestivum_22   (Bread wheat)   110 102
Aegilops_tauschii_22 34 28
Brachypodium_distachyon_   (Stiff brome)   58 52
Oryza_barthii_22   (African wild rice)   56 52
Oryza_meridionalis_22 47 42
Oryza_glumaepatula_22 51 46
Oryza_glaberrima   (African rice)   38 35
Oryza_punctata_22 64 60
Oryza_nivara_22 54 50
Oryza_brachyantha_22   (Malo sina)   37 34
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   71 61
Oryza_sativa_v193   (Rice)   71 61
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   41 38
Panicum_virgatum_v202   (Switchgrass)   82 74
Setaria_italica_v164   (Foxtail millet)   45 42
Zea_mays_subsp._mays_   (Maize)   66 62
Zea_mays_v181   (Maize)   78 73
Sorghum_bicolor_   (Sorghum)   37 33
Musa_balbisiana   (Balbis banana)   43 40
Musa_acuminata_22   (Wild Malaysian banana)   50 47
Amborella_trichopoda_22 22 21
Physcomitrella_patens 35 33
Coccomyxa_subellipsoidea_sp._C-169_v2 15 14
Asterochloris_sp._Cgr/DA1pho_v1.0 14 13
Chlorella_variabilis_sp._NC64A_ 16 14
Chlorella_vulgaris_ 15 14
Volvox_carteri_f._nagariensis_ 16 15
Volvox_carteri_v199 16 16
Chlamydomonas_reinhardtii_4.0 23 22
Ostreococcus_sp._RCC809_ 13 13
Ostreococcus_lucimarinus_CCE9901_ 14 14
Ostreococcus_tauri_ 13 13
Bathycoccus_prasinos_ 14 14
Micromonas_sp._RCC299_ 15 15
Micromonas_pusilla_CCMP1545_v3.0 15 15
Cyanidioschyzon_merolae_strain_10D_22 9 9
Cyanidioschyzon_merolae 8 8
Porphyridium_purpureum_02_2012 13 12
Thecamonas_trahens_ATCC_50062_ 27 26
Bigelowiella_natans_CCMP2755_22 32 31
Giardia_lamblia_2.3 5 5
Cyanophora_paradoxa_ 13 13
Leishmania_mexicana_2.4 20 20
Leishmania_major_strain_Friedlin_ 20 20
Leishmania_infantum_JPCM5_2.4 19 19
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 20 20
Trypanosoma_vivax_ 12 12
Trypanosoma_cruzi_strain_CL_Brener 21 20
Trypanosoma_congolense_2.4 13 13
Trypanosoma_brucei_gambiense_v4.1 18 18
Trypanosoma_brucei_TREU927_v4.1 18 18
Ectocarpus_siliculosus 20 20
Aureococcus_anophagefferens_ 20 20
Albugo_laibachii_22 45 44
Pythium_iwayamai_DAOM_BR242034_22 25 24
Pythium_arrhenomanes_ATCC_12531_22 21 20
Pythium_ultimum_v1.7-2 25 24
Pythium_aphanidermatum_DAOM_BR444_22 25 23
Pythium_irregulare_DAOM_BR486_22 23 22
Pythium_vexans_DAOM_BR484_22 26 25
Phytophthora_ramorum_1.1   (Sudden oak death agent)   22 20
Phytophthora_sojae_1.1 19 19
Phytophthora_infestans_T30-4_ 21 20
Phytophthora_capsici_ 28 28
Hyaloperonospora_arabidopsidis_22 17 16
Phaeodactylum_tricornutumCCAP_1055/1 20 20
Fragilariopsis_cylindrus 35 32
Thalassiosira_pseudonana_CCMP1335 20 20
Perkinsus_marinus_ATCC_50983_ 22 21
Paramecium_tetraurelia_ 53 52
Tetrahymena_thermophila_SB210_1_ 25 25
Ichthyophthirius_multifiliis_strain_G5_ 12 12
Cryptosporidium_hominis 12 11
Cryptosporidium_muris 13 12
Cryptosporidium_parvum_Iowa_II 12 11
Neospora_caninum 16 15
Toxoplasma_gondii_VEG 18 17
Toxoplasma_gondii_ME49 17 16
Toxoplasma_gondii_GT1 17 16
Babesia_bovis_T2Bo_ 18 18
Theileria_parva__ 12 12
Theileria_annulata 12 12
Plasmodium_falciparum_3D7_ 14 13
Plasmodium_vivax_SaI-1_7.0 14 13
Plasmodium_knowlesi_strain_H_ 15 14
Plasmodium_yoelii_ssp._yoelii_1_ 11 10
Plasmodium_chabaudi_ 13 12
Plasmodium_berghei_ANKA_ 13 12
Symbiodinium_minutum_clade_B1_v1.2 22 22
Naegleria_gruberi_ 32 32
Trichomonas_vaginalis_ 36 36
Guillardia_theta_CCMP2712_v1.0_ 17 16
Emiliania_huxleyi_CCMP1516_ 39 37
Pediococcus_claussenii_ATCC_BAA-344 1 1
Geobacillus_thermoglucosidasius_C56-YS93 1 1
Oceanobacillus_iheyensis_HTE831 1 1
Desulfovibrio_salexigens_DSM_2638 1 1
Legionella_pneumophila_str._Corby 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   76 68
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   57 53
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   33 30
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   16 14
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   24 20
Cryptococcus_neoformans_var._grubii_H99_ 13 12
Cryptococcus_neoformans_B-3501A_ 10 9
Cryptococcus_neoformans_JEC21_ 10 9
Paracoccidioides_brasiliensis_Pb01_ 11 10
Paracoccidioides_brasiliensis_Pb03_ 12 11
Coccidioides_posadasii_str._Silveira_ 13 12
Coccidioides_immitis_RMSCC_3703_ 14 14
Coccidioides_immitis_RMSCC_2394_ 13 12
Coccidioides_immitis_H538.4_ 12 12
Ajellomyces_dermatitidis_ER-3_ 12 11
Histoplasma_capsulatum_H143 11 10
Histoplasma_capsulatum_H88 12 11
Histoplasma_capsulatum_G186AR 13 12
Aspergillus_fumigatus_A1163_ 12 11
Candida_albicans_WO-1_ 11 10
Saccharomyces_cerevisiae_UC5 14 13
Saccharomyces_cerevisiae_PW5 17 15
Saccharomyces_cerevisiae_FL100 10 9
Saccharomyces_cerevisiae_CLIB324 13 12
Saccharomyces_cerevisiae_CBS7960 14 13
Saccharomyces_cerevisiae_YJM269 16 14
Saccharomyces_cerevisiae_T7 17 15
Saccharomyces_cerevisiae_FostersB 13 13
Saccharomyces_cerevisiae_FostersO 11 11
Saccharomyces_cerevisiae_VL3 16 14
Saccharomyces_cerevisiae_Vin13 14 12
Saccharomyces_cerevisiae_LalvinQA23 13 12
Saccharomyces_cerevisiae_AWRI796 14 13
Saccharomyces_cerevisiae_Sigma1278b 17 15
Saccharomyces_cerevisiae_W303 17 15
Saccharomyces_cerevisiae_JAY291 17 15
Saccharomyces_cerevisiae_AWRI1631 13 12
Saccharomyces_cerevisiae_YPS163 9 8
Saccharomyces_cerevisiae_M22 5 5
Saccharomyces_cerevisiae_T73 10 8
Saccharomyces_cerevisiae_CLIB215 12 11
Saccharomyces_cerevisiae_Y10 7 6
Saccharomyces_cerevisiae_YJM789_ 17 15
Saccharomyces_cerevisiae_YJM789 17 15
Saccharomyces_cerevisiae_RM11-1a 16 14
Saccharomyces_cerevisiae_RM11-1a_ 16 14
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   17 15
Schizosaccharomyces_pombe_972h-_ 10 9
Batrachochytrium_dendrobatidis_JEL423_ 17 16
Batrachochytrium_dendrobatidis_JAM81_ 18 17
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   32 30
Hordeum_vulgare_22   (Domesticated barley)   39 35
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   41 38
Trypanosoma_brucei_Lister_427_v4.1 18 18
Neospora_caninum_Nc-Liverpool_6.2 16 15
Plasmodium_falciparum_HB3_ 12 11
Plasmodium_falciparum_Dd2_ 5 5
Lactococcus_lactis_subsp._lactis_CV56 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   35 30
Pan_troglodytes_69_2.1.4   (Chimpanzee)   27 23
Gorilla_gorilla_69_3.1   (Western gorilla)   29 25
Pongo_abelii_69_2   (Sumatran orangutan)   27 22
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   30 26
Macaca_mulatta_69_1   (Rhesus monkey)   34 29
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   32 29
Otolemur_garnettii_69_3   (Small-eared galago)   29 26
Microcebus_murinus_69_1   (Gray mouse lemur)   22 20
Rattus_norvegicus_69_3.4   (Norway rat)   32 29
Mus_musculus_69_38   (House mouse)   33 28
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   25 22
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   28 24
Cavia_porcellus_69_3   (Domestic guinea pig)   31 27
Oryctolagus_cuniculus_69_2   (Rabbit)   34 28
Ochotona_princeps_69   (American pika)   21 19
Tupaia_belangeri_69   (Northern tree shrew)   19 18
Sus_scrofa_69_10.2   (Pig)   30 26
Bos_taurus_69_3.1   (Cattle)   28 24
Vicugna_pacos_69_1   (Alpaca)   19 16
Tursiops_truncatus_69_1   (Bottlenose dolphin)   25 23
Mustela_putorius_furo_69_1.0   (Domestic ferret)   33 29
Ailuropoda_melanoleuca_69_1   (Giant panda)   29 26
Canis_familiaris_69_3.1   (Dog)   33 28
Felis_catus_69   (Domestic cat)   26 23
Equus_caballus_69_2   (Horse)   30 26
Myotis_lucifugus_69_2.0   (Little brown bat)   28 24
Pteropus_vampyrus_69_1   (Large flying fox)   28 25
Sorex_araneus_69_1   (European shrew)   15 13
Erinaceus_europaeus_69   (Western European hedgehog)   18 15
Procavia_capensis_69_1   (Cape rock hyrax)   26 23
Loxodonta_africana_69_3   (African savanna elephant)   31 27
Echinops_telfairi_69   (Small Madagascar hedgehog)   21 18
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   20 17
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   23 19
Macropus_eugenii_69_1.0   (Tammar wallaby)   20 18
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   24 21
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   32 28
Ornithorhynchus_anatinus_69_5   (Platypus)   22 19
Petromyzon_marinus_69_7.0   (Sea lamprey)   24 18
Meleagris_gallopavo_69_2   (Turkey)   28 23
Gallus_gallus_69_2   (Chicken)   27 23
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   31 26
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   31 26
Anolis_carolinensis_69_2.0   (Green anole)   36 30
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   29 25
Latimeria_chalumnae_69_1   (Coelacanth)   32 27
Gadus_morhua_69_1   (Atlantic cod)   33 28
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   36 30
Takifugu_rubripes_69_4   (Torafugu)   37 31
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   42 33
Oryzias_latipes_69_1   (Japanese medaka)   32 27
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   35 31
Oreochromis_niloticus_69_1.0   (Nile tilapia)   37 30
Danio_rerio_69_9   (Zebrafish)   44 36
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   13 12
Ciona_intestinalis_69   (Vase tunicate)   20 18
Drosophila_melanogaster_69_5   (Fruit fly)   22 18
Caenorhabditis_elegans_69_215   (Roundworm)   21 18
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   17 15
Arabidopsis_thaliana_10   (Thale cress)   43 40

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   114 106
Homo_sapiens__(NCBI_version)   (Human)   44 38
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   30 26
Heliconius_numata__(Incomplete) 9 8
Loa_loa_v3.3_(Request)   (Eye worm)   15 13
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   14 12
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   13 11
Moniliophthora_perniciosa_FA553__(Genome_survey) 9 9
Encephalitozoon_intestinalis__(endoparasite) 5 5
Encephalitozoon_cuniculi_(endoparasite) 4 4
Picea_sitchensis__(Incomplete)   (Sitka spruce)   12 12
Lotus_japonicus__(Early_assembly) 27 26
Malus_x_domestica_(Duplicate)   (Apple)   65 61
Ricinus_communis__(Early_assembly)   (Castor bean)   30 28
Nicotiana_benthamiana_0.4.4_(Early_draft) 83 74
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   34 31
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   34 31
Phoenix_dactylifera__(Early_draft)   (Date palm)   27 24
NCBI_viral_sequences_(Viral) 3 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 151 151
Protein_Data_Bank_(all_PDB_sequenc) 250 242
UniProt__viral_sequences_(Viral) 4 3
Protozoadb_2010_08_(Protozoadb) 563 549
STRING_v9.0.5_(STRING) 2520 2261
NCBI_2017_08_genome 29327 25996
Uniprot_2018_03_genome 30487 27745
Core_Eukaryotic_Genes_458_(CEGMA) 12 12
PDB_chains_(SCOP_1.75)_(PDB) 29 29
TargetDB__(Targets) 85 74

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