SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for 1h3fA from PDB chains (SCOP 1.75)

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  1h3fA
Domain Number 1 Region: 14-298
Classification Level Classification E-value
Superfamily Nucleotidylyl transferase 2.95e-122
Family Class I aminoacyl-tRNA synthetases (RS), catalytic domain 0.00000000067
Further Details:      
 
Domain Number 2 Region: 353-430
Classification Level Classification E-value
Superfamily Alpha-L RNA-binding motif 5.46e-17
Family Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 0.0000179
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) SCOP: 1h3fA   PDB: 1h3f
Sequence length 432
Comment (A:)
Sequence
MAGTGHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLR
KMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEP
HLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQA
YDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNY
IGLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAY
ALPQIPPRIDRAFYESLGYAWEAFGRDKEAGPEEVRRAEARYDEVAKGGIPEEIPEVTIP
ASELKEGRIWVARLFTLAGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRILQR
GKDRFVRVRLSD
Download sequence
Identical sequences P83453 Q5SIH0
WP_011173450.1.85415 YP_144665.1.19876 1h3e_A 1h3f_A 1h3f_B gi|55981368|ref|YP_144665.1| gi|46199335|ref|YP_005002.1| 1h3fA 262724.TTC1033 300852.TTHA1399

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]