SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for XP_016161398.1.66865 from NCBI 2017_08 genome

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  XP_016161398.1.66865
Domain Number - Region: 674-999
Classification Level Classification E-value
Superfamily ARM repeat 0.000432
Family Exportin HEAT-like repeat 0.062
Further Details:      
 
Domain Number - Region: 846-985,1236-1269,1301-1330,1403-1646,1712-1879
Classification Level Classification E-value
Superfamily ARM repeat 0.0302
Family RPA1889-like 0.091
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) XP_016161398.1.66865
Sequence length 1990
Comment PREDICTED: nuclear pore complex protein Nup205 [Ficedula albicollis]; AA=GCF_000247815.1; RF=representative genome; TAX=59894; STAX=59894; NAME=Ficedula albicollis; AL=Chromosome; RT=Major
Sequence
MNAIWKRQPEAVHRLDQVLKKHKSDFISLFRNPPKNVQQHEKIQKASTEGVAIQGQQGTR
LLPEQLIREAFILSDLFDIGELAAVELLLAGEHQQPHFPGLTRGLVAVLLYWDGKRCIAN
SLRTLIQSRQGKTWTLELSQELISMTTRFTDDLMEQGLTQKILTLVSHIDLNNEFDKLQR
ERGLGSEKHRKEVSDLIKECRQSLAESLFVWTCQSPLSKDDTLILISYLEKVTVEADGSL
DGVNLSLLMALLYCFDVSFLEQGAEDREDLMHRLPLLAERQYIATIHTRLQESQPWKLPG
LQATVRLAWALTLRGISQFSDVTALAEFTEADEAMAELAIADYVFLFLTESVVASENFYQ
EEFYIRKIHNLVTDFLALMPMKVKQLRNRADEDARMIHMSIQMGNDPPISLRRDLEHLML
LIAELYRKDPFNLELAHEYWCPSEPLQTSTIMGSYLGVAHQRPPQRQVVLSKFVRQMGDL
LPSTIYIPYLKMLRGLASGPQCAHYCFSLLKVNGSSHAENIQGAGGSPVSWEHFFHSLML
YHEHLRKDLPSADSVQYRHLPLRGITQKEQDGLIAFLQLTTVIVNWSENARLALCEHPQW
TPVVVILGLLQCSIPPILKAELLETLTAFGRSPEIAASLWQSLEYTQILQTVRSPGQRQA
IGIEVELNEIESRCEEYPLTRAFCRLISTLVESSFPANLGAGLRPPGFDPYLQFLRDSVF
LRFRTRAYRRAAEKWEVAEVVLEVFYKLLRDYEPQLEDFVDQYVELQGEEIIAYKPPGFN
LMYHLLNESPMLELCLSLLEEGVKQLDTYAPFPGKKHLEKAVQYCLALLNLTLQKENNFM
DLLRESHLSLIVTPLEQLLQGINPRTKKADHVVNIARYLYHGNSNPELAFESAKILCCIS
DNSNIQIKLVGDFTHDQSVSQKLMAGFVECLDNEDAEELINPDEELEPEKKRAQIHHETR
IHILNLLITSLECSPPSLALYLLGFELKKPVSTTNLQDPGVLGCPRTCLHAILNILEKGT
ETRNGPTAVRESPHLAELCYQVIYQLCACSDTSGPTMRYLRTSQDFLFTQLQYLPFSIKE
HEISTLNQMSWLMKTAAIEMRVTSLNRQRSHTQRLLHLLLDDMPVKPYLADGEGGMEDES
RSVSGFLHFDTASKVRRKILNILDSIDFSQDIPEPLQLDFFDRAQIEQVIANCEHKNARG
QVVCNVKYVHRVLVAEVNALQGMAAIGQRPLLMEEINTILQYVVERNKLLQCLHAKRHAL
ESWRQLVEIILTACPQDLIQAEDRQLIIRDLLQDVHDKILDDDAAQELMPVVAGAVFTLT
AHLSQSVKTEQKQPLALPMAGQSQYVLMLDGSFTSSPASESISMGFASIGDSSLHIILKK
LLDFILKTGGGFQRVRTHLYGSLLYYLQIAQRPDEPDTLEAAKKTMWEHLTAPEDVFSKL
QRENMATIESYGAALMEVVCRDACDGHEIGRMLALALLDHIVSVDKQQQWLLYLSNSGYL
KVLVDSLADDDLALQSLLTPQPPLLKALYTYESKMAFLTRVAKSQQGALELLRSGVIVRL
AQCQVYDMRPETDHQGMYAMRDPPVFIPAPVERYRQILLPALQLCQVILTSSMAQHLQAA
GQVLQFLISHSDTIQAILRCQEISVGSLQELASLTGLISKAALPGVLTELDMDVNEGTQM
ELQGHIGRFQRQCLGLLSRFGGSDRLRQFKLQDDNAAGDRVNKRDETELAVQQICANVME
YCESLMLQSAPSFQHTVCLFTPSLSESTNRDGPRQDTQTPVVPYWHLPGLGIIVYLLKQS
TSDFFSYYDSHRQSVNKLQNVEQLPPDEIKELCQSVMPAGVDKISTSQKYVLARRRLVKL
INNRAKLLSLCSYIIEICLFILWRHLEHYLLHCTPTDSQDPLLSSRMSFKKGRLQDSFGS
EPRLDFSSGLNRVSQHDIEQLQIEATNSFGESLQKKLLDIEGLYSKVRSRYTFIQALVRR
IRGLLRISRT
Download sequence
Identical sequences U3K9F1
XP_016161398.1.66865 ENSFALP00000011655

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]