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Hemocyanin middle domain family domain assignments
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PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 6 significant domains in 6 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1hc1A   1.32e-104   0.0000000000865   136-397   1hc1 A:136-398  
1js8A   4.64e-101   0.0000000000992   2-286   1js8 A:2503-2791  
1ll1A   7.18e-109   0.0000000000689   110-379   1lla A:110-379  
1llaA   7.18e-109   0.0000000000689   110-379   1lla A:110-379  
1lnlA   3.42e-102   0.0000000000304   3-306   1lnl A:-3-304  
1oxyA   7.18e-109   0.0000000000689   110-379   1lla A:110-379  

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Select to display   Genome       Domains   Proteins
No Yes ALL   3790 3790
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Octopus bimaculoides 280   14 6
No Yes Danaus plexippus OGS1.0 Monarch butterfly 9 8
No Yes Heliconius melpomene Postman butterfly 10 8
No Yes Bombyx mori Domestic silkworm 7 7
No Yes Nasonia vitripennis Jewel wasp 9 9
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 9 9
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 6 6
No Yes Linepithema humile v1.1 Argentine ant 5 5
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 5 5
No Yes Solenopsis invicta v.2.2.3 Red fire ant 5 4
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 3 3
No Yes Atta cephalotes v1.1   3 3
No Yes Camponotus floridanus v3.3 Florida carpenter ant 6 6
No Yes Lucilia cuprina Australian sheep blowfly 8 7
No Yes Drosophila grimshawi 1.3   6 6
No Yes Drosophila willistoni 1.3   4 4
No Yes Drosophila pseudoobscura 2.13   3 3
No Yes Drosophila persimilis 1.3   3 3
No Yes Drosophila suzukii   4 4
No Yes Drosophila yakuba 1.3   6 6
No Yes Drosophila simulans 1.3   5 5
No Yes Drosophila sechellia 1.3   4 4
No Yes Drosophila melanogaster 76_5 Fruit fly 5 5
No Yes Drosophila erecta 1.3   5 5
No Yes Drosophila ananassae 1.3   4 4
No Yes Drosophila virilis 1.2   5 5
No Yes Drosophila mojavensis 1.3   5 5
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 23 23
No Yes Culex pipiens quinquefasciatus Southern house mosquito 20 20
No Yes Anopheles darlingi 22 American malaria mosquito 8 8
No Yes Anopheles gambiae 49_3j African malaria mosquito 13 13
No Yes Tribolium castaneum 3.0 Red flour beetle 10 10
No Yes Pediculus humanus corporis (Early assembly) Human body louse 3 3
No Yes Acyrthosiphon pisum Pea aphid 2 2
No Yes Rhodnius prolixus 22   5 5
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   1 1
No Yes Mnemiopsis leidyi Sea walnut 4 4
No Yes Amphimedon queenslandica   2 2
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 5 5
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 13 13
No Yes Heliconius numata (Incomplete)   5 5
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes Drosophila melanogaster 69_5 Fruit fly 5 5
No Yes NCBI 2017_08 genome   772 715
No Yes STRING v9.0.5 (STRING)   116 116
No Yes Uniprot 2018_03 genome   2013 1704
No Yes PDB chains (SCOP 1.75) (PDB)   6 6
No Yes Protein Data Bank (all PDB sequenc)   181 105
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   221 221

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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