SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > PDB chains (SCOP 1.75) > Reverse transcriptase domains


Reverse transcriptase family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 82 significant domains in 82 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1bqnA   1.52e-138   0.0000000000000554   5-428   1vrt A:4-429  
1bqnB   2.06e-138   0.000000000000058   5-428   1vrt A:4-429  
1c1bB   1.26e-139   0.000000000000049   5-428   1vrt A:4-429  
1dloA   1.35e-138   0.0000000000000509   5-428   1vrt A:4-429  
1dloB   8.97e-139   0.0000000000000607   5-425   1vrt A:4-429  
1eetA   2.96e-139   0.0000000000000472   5-428   1vrt A:4-429  
1eetB   2.06e-139   0.0000000000000563   5-425   1vrt A:4-429  
1fk9A   7.89e-140   0.0000000000000461   5-428   1vrt A:4-429  
1fkoA   7.26e-140   0.0000000000000479   5-428   1vrt A:4-429  
1fkoB   3.41e-140   0.0000000000000479   5-428   1vrt A:4-429  
1harA   1.52e-82   0.00000000177   5-216   1har A:  
1hmvA   3.05e-139   0.0000000000000472   5-428   1vrt A:4-429  
1hmvB   1.26e-139   0.0000000000000472   5-428   1vrt A:4-429  
1hniA   1.35e-138   0.0000000000000509   5-428   1vrt A:4-429  
1hniB   1.7e-139   0.0000000000000622   5-425   1vrt A:4-429  
1hqeA   1.26e-138   0.0000000000000529   5-428   1vrt A:4-429  
1hqeB   4.75e-139   0.0000000000000529   5-428   1vrt A:4-429  
1hvuA   2.96e-139   0.0000000000000472   5-428   1vrt A:4-429  
1hvuB   3.14e-139   0.000000000000058   2-421   1vrt A:4-429  
1hysA   1.26e-138   0.0000000000000509   5-428   1vrt A:4-429  
1hysB   8.34e-139   0.0000000000000692   5-421   1vrt A:4-429  
1i6jA   7.89e-86   0.000000000191   3-255   1rw3 A:  
1ikwA   3.05e-139   0.0000000000000472   5-428   1vrt A:4-429  
1ikxA   2.78e-139   0.000000000000049   5-428   1vrt A:4-429  
1ikxB   1.88e-139   0.0000000000000585   5-425   1vrt A:4-429  
1j5oB   1.61e-138   0.0000000000000525   5-428   1vrt A:4-429  
1jlaA   1.52e-139   0.0000000000000494   5-428   1vrt A:4-429  
1jlaB   6.37e-140   0.0000000000000494   5-428   1vrt A:4-429  
1jlgA   1.88e-139   0.0000000000000494   5-428   1vrt A:4-429  
1jlgB   8.07e-140   0.0000000000000494   5-428   1vrt A:4-429  
1lw0A   7.44e-140   0.0000000000000487   5-428   1vrt A:4-429  
1lw0B   3.14e-140   0.0000000000000487   5-428   1vrt A:4-429  
1lwcA   2.69e-139   0.0000000000000476   5-428   1vrt A:4-429  
1lwcB   1.17e-139   0.0000000000000476   5-428   1vrt A:4-429  
1lweA   1.08e-139   0.0000000000000498   5-428   1vrt A:4-429  
1lweB   4.48e-140   0.0000000000000498   5-428   1vrt A:4-429  
1lwfA   1.7e-138   0.0000000000000546   5-428   1vrt A:4-429  
1lwfB   7.08e-139   0.0000000000000546   5-428   1vrt A:4-429  
1mmlA   7.17e-85   0.000000000233   16-264   1rw3 A:  
1mu2A   3.68e-135   0.0000000000000762   5-426   1mu2 A:3-429  
1mu2B   3.01e-135   0.0000000000000804   2-421   1mu2 A:3-429  
1nndA   3.3e-84   0.000000000202   2-254   1rw3 A:  
1qajA   8.61e-86   0.000000000191   6-258   1rw3 A:  
1qe1A   4.13e-138   0.0000000000000525   5-428   1vrt A:4-429  
1qe1B   2.87e-138   0.0000000000000626   5-425   1vrt A:4-429  
1r0aA   9.86e-138   0.0000000000000542   5-428   1vrt A:4-429  
1r0aB   5.11e-139   0.0000000000000509   5-428   1vrt A:4-429  
1rt3A   1.79e-138   0.0000000000000533   5-428   1vrt A:4-429  
1rt3B   1.88e-139   0.000000000000049   5-428   1vrt A:4-429  
1rtdA   6.1e-139   0.000000000000049   5-428   1vrt A:4-429  
1rw3A   1.78e-146   0.0000000000000317   6-449   1rw3 A:  
1s1tA   1.35e-139   0.0000000000000468   5-428   1vrt A:4-429  
1s1tB   5.65e-140   0.0000000000000468   5-428   1vrt A:4-429  
1s1wA   1.97e-139   0.0000000000000476   5-428   1vrt A:4-429  
1s1wB   8.34e-140   0.0000000000000476   5-428   1vrt A:4-429  
1s1xA   1.79e-139   0.0000000000000465   5-428   1vrt A:4-429  
1s1xB   7.44e-140   0.0000000000000465   5-428   1vrt A:4-429  
1s9eA   1.35e-138   0.0000000000000509   5-428   1vrt A:4-429  
1t03B   5.47e-139   0.0000000000000509   5-428   1vrt A:4-429  
1t05B   1.61e-139   0.0000000000000498   5-428   1vrt A:4-429  
1uwbA   2.24e-138   0.0000000000000546   5-428   1vrt A:4-429  
1uwbB   1.61e-138   0.0000000000000651   5-425   1vrt A:4-429  
1vrtA   8.7e-140   0.0000000000000461   5-428   1vrt A:4-429  
1ztwA   7.89e-86   0.000000000191   2-254   1rw3 A:  
2be2B   5.11e-139   0.0000000000000509   5-428   1vrt A:4-429  
2oppA   7.8e-140   0.0000000000000461   2-425   1vrt A:4-429  
2oppB   5.11e-140   0.0000000000000476   2-424   1vrt A:4-429  
2opqB   9.86e-140   0.0000000000000502   2-423   1vrt A:4-429  
2opsA   1.7e-139   0.0000000000000494   4-427   1vrt A:4-429  
2opsB   1.88e-139   0.0000000000000529   2-423   1vrt A:4-429  
2rf2A   8.88e-140   0.0000000000000461   8-431   1vrt A:4-429  
2rf2B   3.77e-140   0.0000000000000461   8-431   1vrt A:4-429  
2vg5B   1.52e-139   0.000000000000049   5-427   1vrt A:4-429  
2zd1B   6.64e-139   0.0000000000000529   5-427   1vrt A:4-429  
3di6A   8.79e-140   0.0000000000000461   5-428   1vrt A:4-429  
3dlgB   3.68e-140   0.0000000000000461   5-428   1vrt A:4-429  
3dlkB   1.52e-138   0.0000000000000567   2-422   1vrt A:4-429  
3drrA   1.52e-139   0.0000000000000494   8-431   1vrt A:4-429  
3drrB   6.46e-140   0.0000000000000494   8-431   1vrt A:4-429  
3drsA   8.16e-140   0.0000000000000479   8-431   1vrt A:4-429  
3drsB   3.5e-140   0.0000000000000479   8-431   1vrt A:4-429  
3hvtA   2.96e-139   0.0000000000000472   5-428   1vrt A:4-429  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Reverse transcriptase domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   427650 427650
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Macaca mulatta 76_1 Rhesus monkey 2 2
No Yes Oryctolagus cuniculus 76_2 Rabbit 3 3
No Yes Sus scrofa 76_10.2 Pig 1 1
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 27 26
No Yes Mustela putorius furo 76_1.0 Domestic ferret 1 1
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 35 35
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 73 73
No Yes Ornithorhynchus anatinus 76_5 Platypus 1 1
No Yes Gallus gallus 76_4 Chicken 2 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 15 15
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 31 31
No Yes Anolis carolinensis 76_2.0 Green anole 3 3
No Yes Latimeria chalumnae 76_1 Coelacanth 26 26
No Yes Lepisosteus oculatus 76 Spotted gar 3 3
No Yes Takifugu rubripes 76_4 Torafugu 9 9
No Yes Oryzias latipes 76_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 1 1
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 4 4
No Yes Astyanax mexicanus 76 Mexican tetra 5 5
No Yes Danio rerio 76_9 Zebrafish 5 5
No Yes Oikopleura dioica   1 1
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 111 111
No Yes Bombyx mori Domestic silkworm 26 26
No Yes Nasonia vitripennis Jewel wasp 44 44
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 45 40
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 2
No Yes Acyrthosiphon pisum Pea aphid 19 19
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   2 2
No Yes Meloidogyne incognita Southern root-knot nematode 4 4
No Yes Meloidogyne hapla   3 3
No Yes Caenorhabditis japonica   36 35
No Yes Caenorhabditis brenneri   37 37
No Yes Caenorhabditis remanei   49 49
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   3 3
No Yes Echinococcus multilocularis   3 3
No Yes Mnemiopsis leidyi Sea walnut 17 17
No Yes Thelohanellus kitauei   59 59
No Yes Acropora digitifera v1.0   11 11
No Yes Hydra vulgaris   2 2
No Yes Amphimedon queenslandica   17 17
No Yes Rhizopus oryzae RA 99-880   91 91
No Yes Pisolithus microcarpus 441 v1.0   5 5
No Yes Pisolithus tinctorius Marx 270 v1.0   4 4
No Yes Scleroderma citrinum Foug A v1.0   9 9
No Yes Amanita muscaria Koide v1.0 Fly agaric 2 2
No Yes Galerina marginata v1.0   2 2
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Phanerochaete chrysosporium RP-78 2.1   5 5
No Yes Trametes versicolor v1.0   1 1
No Yes Tremella mesenterica Witches' butter 5 5
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Chaetomium globosum CBS 148.51   13 13
No Yes Fusarium oxysporum f. sp. lycopersici 4286   1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   7 7
No Yes Setosphaeria turcica v1.0   2 2
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Penicillium marneffei ATCC 18224   4 4
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Candida dubliniensis CD36   1 1
No Yes Candida tropicalis MYA-3404   1 1
No Yes Candida albicans SC5314   1 1
No Yes Lodderomyces elongisporus NRRL YB-4239   3 3
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Candida lusitaniae ATCC 42720   1 1
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Saccharomyces mikatae MIT   1 1
No Yes Saccharomyces paradoxus MIT   2 2
No Yes Saccharomyces cerevisiae 76 Baker's yeast 2 2
No Yes Schizosaccharomyces cryophilus OY26 22   2 2
No Yes Schizosaccharomyces pombe Fission yeast 11 11
No Yes Spizellomyces punctatus DAOM BR117   2 2
No Yes Theobroma cacao B97-61/B2 v1 Cacao 258 258
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 1 1
No Yes Glycine max v109 Soybean 18 18
No Yes Cucumis sativus v122 Cucumber 9 9
No Yes Fragaria vesca Wild strawberry 5 5
No Yes Prunus persica v139 Peach 23 23
No Yes Solanum lycopersicum v.2.3 Tomato 4 4
No Yes Solanum tuberosum Potato 1 1
No Yes Triticum urartu 22   1 1
No Yes Triticum aestivum 22 Bread wheat 4 4
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 6 6
No Yes Oryza brachyantha 22 Malo sina 4 4
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 975 972
No Yes Oryza sativa v193 Rice 972 969
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 3 3
No Yes Sorghum bicolor Sorghum 13 13
No Yes Musa balbisiana Balbis banana 34 34
No Yes Volvox carteri f. nagariensis   1 1
No Yes Porphyridium purpureum 02_2012   9 9
No Yes Trypanosoma congolense 2.4   4 4
No Yes Albugo laibachii 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 11 11
No Yes Phytophthora sojae 1.1   65 64
No Yes Phytophthora infestans T30-4   4 4
No Yes Perkinsus marinus ATCC 50983   22 22
No Yes Plasmodium yoelii ssp. yoelii 1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 56 56
No Yes Cryptococcus neoformans B-3501A   3 3
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Saccharomyces cerevisiae UC5   1 1
No Yes Saccharomyces cerevisiae PW5   2 2
No Yes Saccharomyces cerevisiae Sigma1278b   1 1
No Yes Saccharomyces cerevisiae W303   2 2
No Yes Saccharomyces cerevisiae JAY291   1 1
No Yes Saccharomyces cerevisiae T73   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 3 3
No Yes Schizosaccharomyces pombe 972h-   11 11
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 108 108
No Yes Hordeum vulgare 22 Domesticated barley 1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 87 87
No Yes Moniliophthora perniciosa FA553 (Genome survey)   11 11
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 4 4
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 4 4
No Yes Phoenix dactylifera (Early draft) Date palm 4 4
No Yes Macaca mulatta 69_1 Rhesus monkey 1 1
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 73 73
No Yes Ornithorhynchus anatinus 69_5 Platypus 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 14 14
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 31 31
No Yes Latimeria chalumnae 69_1 Coelacanth 23 23
No Yes Takifugu rubripes 69_4 Torafugu 6 6
No Yes Oryzias latipes 69_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 1 1
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 4 4
No Yes Danio rerio 69_9 Zebrafish 5 5
No Yes Ciona intestinalis 69 Vase tunicate 1 1
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 2 2
No Yes Endophytic microbiome from Rice (meta-genome)   42 42
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Mouse Gut Community lean2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   4374 4348
No Yes Protozoadb 2010_08 (Protozoadb)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Single-cell genome from subgingival tooth surface TM7a (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   1509 1499
No Yes Uniprot 2018_03 genome   303920 303857
No Yes Global Ocean Sampling Expedition (GOS)   5 5
No Yes NCBI viral sequences (Viral)   46 46
No Yes PDB chains (SCOP 1.75) (PDB)   82 82
No Yes Protein Data Bank (all PDB sequenc)   697 697
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   4026 4026
No Yes UniProt viral sequences (Viral)   106730 106718

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.